BS33381.complete Sequence
1709 bp assembled on 2014-03-03
GenBank Submission: KX800494
> BS33381.complete
GAAGTTATCAGTCGACATGCACGCAGGTGGAAAATATTGCGGTCCTCGGC
ATTGTAGTTTCTATATCATAGCATTCCTTATCTGTCAGTTGTTTTTCTTA
GTCATATTTATACGGAATGATGATGCTTCAAGCGCCAATGAACTGTTATC
TTTCATGAATGAGAGTGAGGAGAGTGACCACCTGGATTGGCGCGTATTCA
TATCCCATACACCAGAAACATCGGAGGATTTTTACCAATACAATATTCAT
TTGAGTAATGCTTTGGGTCTTATACGTAAGTTGCCCGTAACAAGGCATCA
TAGTTGTACTACACGTAATTCTATACTTCCTGCCCCTTTGGAGGCCAATG
TGAGTGTGGTGATTAGTTTCCACAATGAAGCGCGTTCTATGCTGCTGCGT
ACCATTGTGTCCCTGCTGAGTCGCTCGCCGGAGGACTATCTGCATGAGCT
AATCCTTGTGGACGATGGCAGTCAGCGAGATGTGACCCTGCTGGATGACC
TCAAGCGATGGATGGGCGGGGTGTTCGGGTCGAGATATCGCCTTGGGCTC
ACCTTCCTCAGGAACCAGGAGCGCATGGGCCTGATTTGGTCGCGCAACAG
GGGCGCCTCCTTGGCCAGTGGACGTTATGTGCTCTTTCTGGACAGCCACT
GCGAGGTGAACGAGGGCTGGCTGGAGCCACTGCTGGAACGGCTTGCACTC
AATACCAATCTGGCAGTTAGTCCACTACTTGATCCCATTGACCCGACCAC
CCTGAGCTACCGGAAGGGCAACGAGTTGCTGAAGGGCGGATTTGACTGGT
CCCTACACTTTCACTGGCTGAAACGACAGCTGACCAACCAGGAGAGCCTG
GAGATGCCCTACCAGAGTCCTGCCTTCGCTGGCGGCGTACTGATGATGTC
ACGCGAATGGTTCCTTAAGCTGGGCAGCTTCAACCCGTATCTGAAGATCT
GGGGCGGTGAGTCCATCGAGCTGGCCATTAAATTGTGGCTTTGCGGTGGA
CAAATTGAGATCGTGCCCTGCAGTCGAATCGGACACATCTTTCGCCGCCG
CCACGCCTTCGACTTTCCACCGCAATCCGACCGTCAGTTGAGCCCGGCCC
AGGAAACCTATCTGCACAACTCAAAAATCATAGCCGAGTCCTGGCTGGAC
GAGTATAAAAATATGTTCTACGCACTGAGACCGGCGGCCAGGCGAATTCC
ACTGGATCACACCTATGATGAGCTGCAACGGATGCGGAAGGAACGGCGGT
GCCATCCCTTCGAATGGTATCTACGGCATGTCAGCCCCGAACTAAGGATG
CACTTCGATGAGCTGTCGGCTACGGGAACGTTGCGGAATGAGGATCGGTG
TGTGCACGCTAGACAAAAGGACTCCCAGCCAATCCTGGCGAGCTGCTACC
TCAGCGACATCACCCAGTGGAGCATGCTGCGCCAGAGTGGACAGTTGAGC
ACCCATCGGGAGCTTTGCCTGGCTGTGGGGTTCGGGATGCGAATAGCATT
GGAGCCGTGCGGGCGGAATGAGACCGTGAGGAGATCGCAGCGATGGGTGC
GCCTGGGCACCCATCTCCTGCACGCCGAATCGCACCTGTGCCTAGATAAT
CCGCTCAAGGACCGATTGGAGATGAGCACTTGCCGTTCGCATGCCGTATC
GCAGTCGTTTCAATTTGCATTGGAAATGGAGGGGCAGACATAAAAGCTTT
CTAGACCAT
BS33381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10000-RA | 1677 | CG10000-PA | 1..1677 | 17..1693 | 8385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10000-RA | 2597 | CG10000-RA | 88..1770 | 12..1694 | 8400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28750466..28750930 | 946..482 | 2325 | 100 | Minus |
| 3R | 32079331 | 3R | 28749211..28749610 | 1694..1295 | 2000 | 100 | Minus |
| 3R | 32079331 | 3R | 28750985..28751166 | 482..301 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 28749851..28750031 | 1297..1117 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 28750171..28750342 | 1116..945 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 28751225..28751385 | 303..143 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 28751444..28751574 | 142..12 | 640 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:05:48 has no hits.
BS33381.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:21 Download gff for
BS33381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10000-RA | 93..1767 | 17..1691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:17 Download gff for
BS33381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10000-RA | 93..1767 | 17..1691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:17 Download gff for
BS33381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28751444..28751569 | 17..142 | 100 | | Minus |
| 3R | 28749214..28749608 | 1297..1691 | 100 | <- | Minus |
| 3R | 28749852..28750031 | 1117..1296 | 100 | <- | Minus |
| 3R | 28750171..28750340 | 947..1116 | 100 | <- | Minus |
| 3R | 28750466..28750929 | 483..946 | 100 | <- | Minus |
| 3R | 28750985..28751163 | 304..482 | 100 | <- | Minus |
| 3R | 28751225..28751385 | 143..303 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:21 Download gff for
BS33381.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24574936..24575330 | 1297..1691 | 100 | <- | Minus |
| arm_3R | 24575574..24575753 | 1117..1296 | 100 | <- | Minus |
| arm_3R | 24575893..24576062 | 947..1116 | 100 | <- | Minus |
| arm_3R | 24576188..24576651 | 483..946 | 100 | <- | Minus |
| arm_3R | 24576707..24576885 | 304..482 | 100 | <- | Minus |
| arm_3R | 24576947..24577107 | 143..303 | 100 | <- | Minus |
| arm_3R | 24577166..24577291 | 17..142 | 100 | | Minus |
BS33381.pep Sequence
Translation from 16 to 1692
> BS33381.pep
MHAGGKYCGPRHCSFYIIAFLICQLFFLVIFIRNDDASSANELLSFMNES
EESDHLDWRVFISHTPETSEDFYQYNIHLSNALGLIRKLPVTRHHSCTTR
NSILPAPLEANVSVVISFHNEARSMLLRTIVSLLSRSPEDYLHELILVDD
GSQRDVTLLDDLKRWMGGVFGSRYRLGLTFLRNQERMGLIWSRNRGASLA
SGRYVLFLDSHCEVNEGWLEPLLERLALNTNLAVSPLLDPIDPTTLSYRK
GNELLKGGFDWSLHFHWLKRQLTNQESLEMPYQSPAFAGGVLMMSREWFL
KLGSFNPYLKIWGGESIELAIKLWLCGGQIEIVPCSRIGHIFRRRHAFDF
PPQSDRQLSPAQETYLHNSKIIAESWLDEYKNMFYALRPAARRIPLDHTY
DELQRMRKERRCHPFEWYLRHVSPELRMHFDELSATGTLRNEDRCVHARQ
KDSQPILASCYLSDITQWSMLRQSGQLSTHRELCLAVGFGMRIALEPCGR
NETVRRSQRWVRLGTHLLHAESHLCLDNPLKDRLEMSTCRSHAVSQSFQF
ALEMEGQT*
BS33381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10000-PA | 558 | CG10000-PA | 1..558 | 1..558 | 2980 | 100 | Plus |
| pgant2-PB | 633 | CG3254-PB | 169..620 | 74..545 | 680 | 34 | Plus |
| pgant2-PA | 633 | CG3254-PA | 169..620 | 74..545 | 680 | 34 | Plus |
| pgant5-PB | 630 | CG31651-PB | 154..509 | 74..443 | 648 | 36.4 | Plus |
| pgant5-PA | 630 | CG31651-PA | 154..509 | 74..443 | 646 | 36.1 | Plus |
