BS33387.complete Sequence
734 bp assembled on 2014-01-24
GenBank Submission: KX800228
> BS33387.complete
GAAGTTATCAGTCGACATGACGGAGCAGAAGAATCAGGTGACGCGCGCTG
CACCGGAGCAGAGCAACGATTACCGCGTGGTGGTTTTTGGAGCCGGCGGC
GTGGGCAAGAGCTCACTGGTGCTGCGCTTCATAAAGGGCACGTTCCGCGA
AAGCTACATCCCAACAATCGAGGATACGTACAGACAGGTCATAAGCTGCA
ACAAGAACATCTGCACGCTGCAAATCACGGACACCACGGGATCGCATCAA
TTCCCGGCTATGCAGAGGCTGTCCATCTCGAAGGGGCACGCCTTCATCCT
GGTCTACTCGGTGTGCTCCAAGCAGAGTCTGGAGGAGCTGCGACCCATCT
GGGCGCTTATCAAGGAGCTGAAGGGCGCCGACATTCCCAACATACCCGTA
ATGTTGGTGGGCAACAAGTGTGATGAGACCGCCGAGTTGCGAGAGGTCTC
CCAAGCGGAGGGTCAGGCCCAGGCGACCACCTGGAGCATATCGTTCATGG
AGACGTCGGCCAAGACGAACCACAATGTGACCGAGCTGTTTCAGGAGCTG
CTCAACATGGAGAAGACGCGCACCGTCTCCCTGCAACTGGACACCAAGAA
GCAGAAGAAGCAGAAGAAGGAGAAGAAGTCCAAGGACACGAACGGCTCGA
TACCGGAGAACGGCGATGCGGGGGCCAGCGCCAGCGGCGGGGCCAAGGAG
AAGTGTCGCGTTATGTAAAAGCTTTCTAGACCAT
BS33387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8500-RA | 702 | CG8500-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8500-RA | 3431 | CG8500-RA | 264..965 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9786583..9786857 | 444..718 | 1375 | 100 | Plus |
| 3R | 32079331 | 3R | 9786131..9786321 | 184..374 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 9785907..9786079 | 17..189 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 9786375..9786450 | 372..447 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:56:10 has no hits.
BS33387.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:52 Download gff for
BS33387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8500-RA | 264..963 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:13 Download gff for
BS33387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8500-RA | 264..963 | 17..716 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:13 Download gff for
BS33387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9786585..9786855 | 446..716 | 100 | | Plus |
| 3R | 9786135..9786320 | 188..373 | 100 | -> | Plus |
| 3R | 9786377..9786448 | 374..445 | 100 | -> | Plus |
| 3R | 9785907..9786077 | 17..187 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:52 Download gff for
BS33387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5611857..5612042 | 188..373 | 100 | -> | Plus |
| arm_3R | 5612099..5612170 | 374..445 | 100 | -> | Plus |
| arm_3R | 5611629..5611799 | 17..187 | 100 | -> | Plus |
| arm_3R | 5612307..5612577 | 446..716 | 100 | | Plus |
BS33387.pep Sequence
Translation from 16 to 717
> BS33387.pep
MTEQKNQVTRAAPEQSNDYRVVVFGAGGVGKSSLVLRFIKGTFRESYIPT
IEDTYRQVISCNKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVC
SKQSLEELRPIWALIKELKGADIPNIPVMLVGNKCDETAELREVSQAEGQ
AQATTWSISFMETSAKTNHNVTELFQELLNMEKTRTVSLQLDTKKQKKQK
KEKKSKDTNGSIPENGDAGASASGGAKEKCRVM*
BS33387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8500-PA | 233 | CG8500-PA | 1..233 | 1..233 | 1188 | 100 | Plus |
| R-PC | 184 | CG1956-PC | 3..178 | 18..201 | 355 | 41.3 | Plus |
| R-PB | 184 | CG1956-PB | 3..178 | 18..201 | 355 | 41.3 | Plus |
| R-PA | 184 | CG1956-PA | 3..178 | 18..201 | 355 | 41.3 | Plus |
| Rap2l-PA | 182 | CG3204-PA | 3..174 | 18..201 | 344 | 40.2 | Plus |
