BS33389.complete Sequence
2870 bp assembled on 2014-03-03
GenBank Submission: KX805192
> BS33389.complete
GAAGTTATCAGTCGACATGCTGTTCAACAAATGTCTGGAAAAGTTGTCCA
GCTCGCTGGGCAATGTGGTCAATCACAAGCTGCAAGAGAAACAAGTCTAC
AACAACAACAATATCAACAATAACAATAACAATACGCTAAACAACAACAA
TGCCTACAACAATCAGCGAAACTTTGAGTACGAAAGAGCCATACAGGCGC
ACTACGGAAGCAAGGGAAGACGCTCGGAGGAGCGCGAAAGGAGCGGCAAG
TTCAAGGCCAGCAAGGGTCGGAAAGCAAAGGTCACCCCACCAACGGAGAC
ACCCGAGGCCCAGGAGCCGGCCTGCAAGAACTGTATGACCCACGACGAGC
TGGCCCAGATCATAAAGGGCGTGGCCAAGGGCGCTGACGCGCAACGTAAT
CGAGACAACCGACTGCAGCGCAGACGTCGTCCTCTCTCCGCCCAACCCTC
CGCCGCTGCCTCCGCCTCCACATCGACGGAATCTCTGCACCGTCTTACAC
CCAGCCCGCAGGCTTCCTACCCGGCCACGCCCACCTCCTGGACAGCCACA
CCGCCCCAGTTCCCAGCCGCCTTCGGCGGCGCCAGCTGCTCCAACAGCAC
ACTGTCCCTCTTGGCCACCATGCGCGTCCAGCTCCATGGTTACACATGGT
TTCATGGCAATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGG
GGCAAGAATGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGA
CTTCGTCCTTTCCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTC
GATGGCAGGACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACC
TTGTCGGAACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTG
CGGAACCGTGGTGCATCTGCGACAGCCATTCAACGCCACACGAATCACGG
CGGCCGGCATCAATGCCCGGGTGGAACAGCTGGTCAAGGGAGGTTTCTGG
GAGGAATTCGAATCGCTGCAACAGGACAGTCGGGACACATTCTCGCGCAA
CGAGGGCTACAAACAGGAGAACCGCCTCAAGAATCGCTACCGCAACATAT
TGCCATACGACCACACGCGCGTCAAGCTGCTGGACGTGGAGCATAGCGTG
GCCGGAGCCGAGTACATCAATGCCAACTACATACGGCTGCCCACCGACGG
CGACCTGTACAACATGAGCAGCTCGTCGGAGAGCCTGAACAGCTCGGTGC
CCTCGTGCCCCGCCTGCACGGCTGCCCAGACACAGCGGAACTGCTCCAAC
TGCCAGCTGCAAAACAAGACGTGCGTGCAGTGCGCCGTGAAGAGCGCCAT
TCTGCCGTATAGCAACTGTGCCACCTGCAGCCGCAAGTCAGACTCCCTGA
GCAAGCACAAGCGGAGCGAATCCTCGGCCTCTTCATCGCCCTCCTCCGGC
TCTGGGTCCGGACCAGGATCGTCGGGCACCAGCGGAGTGAGCAGCGTCAA
TGGACCCGGCACACCCACCAATCTCACGAGCGGCACAGCCGGATGTCTGG
TCGGCCTGCTGAAGAGACACTCGAACGACTCGTCCGGAGCTGTTTCTATA
TCGATGGCCGAACGGGAACGCGAGAGGGAGCGCGAGATGTTTAAGACCTA
CATCGCCACCCAGGGCTGTCTGCTCACCCAGCAAGTGAACACGGTGACGG
ACTTCTGGAACATGGTCTGGCAGGAGAACACGCGGGTGATCGTCATGACC
ACCAAGGAGTACGAGCGCGGCAAAGAAAAGTGCGCCCGCTACTGGCCGGA
CGAGGGTAGATCGGAGCAGTTCGGCCACGCGCGGATACAGTGCGTCTCGG
AGAACTCGACCAGTGACTATACGCTGCGCGAGTTCCTCGTCTCGTGGCGG
GATCAGCCGGCGCGCCGGATCTTTCACTACCATTTCCAGGTGTGGCCGGA
TCACGGAGTGCCCGCCGATCCGGGCTGTGTGCTCAACTTCCTGCAAGATG
TCAACACGCGTCAGAGTCACCTGGCTCAAGCGGGCGAGAAGCCGGGTCCG
ATCTGCGTGCACTGCTCTGCGGGCATCGGTCGCACTGGCACCTTTATTGT
GATCGATATGATTCTCGATCAGATTGTGCGCAATGGATTGGATACTGAAA
TCGACATCCAGCGCACCATTCAGATGGTCCGATCGCAGCGTTCCGGTCTT
GTGCAAACCGAGGCGCAATACAAGTTCGTCTACTATGCGGTGCAGCACTA
TATACAGACCCTGATCGCCCGGAAACGAGCTGAGGAGCAGAGCCTGCAGG
TTGGCCGCGAGTACACCAATATAAAGTACACGGGCGAAATTGGAAACGAT
TCACAAAGATCTCCATTACCACCAGCAATTTCTAGCATAAGTTTAGTTCC
GAGTAAGACGCCACTGACGCCGACATCGGCGGATTTGGGCACTGGGATGG
GCCTAAGCATGGGCGTGGGCATGGGCGTCGGCAACAAGCACGCATCGAAG
CAGCAGCCGCCGTTGCCGGTGGTCAACTGCAACAATAATAACAACGGCAT
TGGCAATAGCGGCTGCAGCAACGGCGGCGGGAGCAGCACCACCAGCAGCA
GCAACGGCAGCAGCAACGGTAACATCAACGCCCTACTGGGCGGCATCGGC
TTGGGGCTGGGCGGCAATATGCGCAAGTCGAACTTTTACAGCGACTCGCT
GAAGCAGCAACAGCAGCGCGAGGAGCAGGCTCCGGCGGGAGCAGGTAAGA
TGCAGCAGCCGGCGCCGCCGCTGCGACCGCGTCCTGGAATACTCAAGTTG
CTCACCAGTCCCGTCATCTTTCAGCAAAATTCAAAAACATTCCCAAAGAC
ATGAAAGCTTTCTAGACCAT
BS33389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csw-RB | 2838 | CG3954-PB | 1..2838 | 17..2854 | 14190 | 100 | Plus |
| csw-RD | 2685 | CG3954-PD | 489..2587 | 646..2744 | 10495 | 100 | Plus |
| csw-RA | 2526 | CG3954-PA | 330..2428 | 646..2744 | 10495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csw-RB | 7664 | CG3954-RB | 859..3696 | 17..2854 | 14190 | 100 | Plus |
| csw-RD | 7119 | CG3954-RD | 1023..3121 | 646..2744 | 10495 | 100 | Plus |
| csw-RC | 4106 | CG3954-RC | 47..2145 | 646..2744 | 10495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2109725..2110667 | 1103..2045 | 4700 | 99.9 | Plus |
| X | 23542271 | X | 2103147..2103775 | 17..645 | 3145 | 100 | Plus |
| X | 23542271 | X | 2111205..2111733 | 2326..2854 | 2645 | 100 | Plus |
| X | 23542271 | X | 2110949..2111141 | 2135..2327 | 965 | 100 | Plus |
| X | 23542271 | X | 2109227..2109415 | 801..989 | 930 | 99.5 | Plus |
| X | 23542271 | X | 2108380..2108543 | 646..809 | 820 | 100 | Plus |
| X | 23542271 | X | 2109481..2109600 | 987..1106 | 600 | 100 | Plus |
| X | 23542271 | X | 2110744..2110836 | 2044..2136 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:06:02 has no hits.
BS33389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:25 Download gff for
BS33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RB | 859..3695 | 17..2853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:22 Download gff for
BS33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csw-RB | 859..3695 | 17..2853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:22 Download gff for
BS33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2103147..2103775 | 17..645 | 100 | -> | Plus |
| X | 2108380..2108542 | 646..808 | 100 | -> | Plus |
| X | 2109235..2109414 | 809..988 | 100 | -> | Plus |
| X | 2109483..2109600 | 989..1106 | 100 | -> | Plus |
| X | 2109729..2110666 | 1107..2044 | 100 | -> | Plus |
| X | 2110745..2110835 | 2045..2135 | 100 | -> | Plus |
| X | 2110950..2111139 | 2136..2325 | 100 | -> | Plus |
| X | 2111205..2111732 | 2326..2853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:25 Download gff for
BS33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2003516..2003633 | 989..1106 | 100 | -> | Plus |
| arm_X | 1997180..1997808 | 17..645 | 100 | -> | Plus |
| arm_X | 2002413..2002575 | 646..808 | 100 | -> | Plus |
| arm_X | 2003268..2003447 | 809..988 | 100 | -> | Plus |
| arm_X | 2003762..2004699 | 1107..2044 | 100 | -> | Plus |
| arm_X | 2004778..2004868 | 2045..2135 | 100 | -> | Plus |
| arm_X | 2004983..2005172 | 2136..2325 | 100 | -> | Plus |
| arm_X | 2005238..2005765 | 2326..2853 | 100 | | Plus |
BS33389.pep Sequence
Translation from 16 to 2853
> BS33389.pep
MLFNKCLEKLSSSLGNVVNHKLQEKQVYNNNNINNNNNNTLNNNNAYNNQ
RNFEYERAIQAHYGSKGRRSEERERSGKFKASKGRKAKVTPPTETPEAQE
PACKNCMTHDELAQIIKGVAKGADAQRNRDNRLQRRRRPLSAQPSAAASA
STSTESLHRLTPSPQASYPATPTSWTATPPQFPAAFGGASCSNSTLSLLA
TMRVQLHGYTWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSV
RTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNPMVETCGTVVH
LRQPFNATRITAAGINARVEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQ
ENRLKNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNM
SSSSESLNSSVPSCPACTAAQTQRNCSNCQLQNKTCVQCAVKSAILPYSN
CATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTP
TNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQG
CLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE
QFGHARIQCVSENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPA
DPGCVLNFLQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMIL
DQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLI
ARKRAEEQSLQVGREYTNIKYTGEIGNDSQRSPLPPAISSISLVPSKTPL
TPTSADLGTGMGLSMGVGMGVGNKHASKQQPPLPVVNCNNNNNGIGNSGC
SNGGGSSTTSSSNGSSNGNINALLGGIGLGLGGNMRKSNFYSDSLKQQQQ
REEQAPAGAGKMQQPAPPLRPRPGILKLLTSPVIFQQNSKTFPKT*
BS33389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csw-PB | 945 | CG3954-PB | 1..945 | 1..945 | 4968 | 100 | Plus |
| csw-PD | 894 | CG3954-PD | 164..892 | 211..922 | 3687 | 96.7 | Plus |
| csw-PA | 841 | CG3954-PA | 111..839 | 211..922 | 3687 | 96.7 | Plus |
| csw-PC | 682 | CG3954-PC | 1..680 | 260..922 | 3432 | 96.5 | Plus |
| l(1)G0232-PH | 498 | CG32697-PH | 273..475 | 545..745 | 381 | 41 | Plus |
| csw-PD | 894 | CG3954-PD | 59..153 | 211..304 | 222 | 48.4 | Plus |
| csw-PA | 841 | CG3954-PA | 6..100 | 211..304 | 222 | 48.4 | Plus |
