BS33392.complete Sequence
2501 bp assembled on 2014-03-03
GenBank Submission: KX805977
> BS33392.complete
GAAGTTATCAGTCGACATGCGAAGAAGAGGAAGCACTTGCAGCGCACAAC
AACCACAGCAGCGGCCACACAAACAGCAGCAGCAGCAGCAGCAGCAAAAT
CAAAGGTTAATCCCCGGCCAACGCTGTTCGCTGCTAATGTTGCTAATTGT
TGGCCAAGCAGTTTACGCTTCTGCCGGCAGTGAGATAATCGCAAATCGTT
CGGCTTCAGCTGGCGAATCGTTGATAATGCTGTCGAATTTCACCGTTGCC
ACGCCGCCTCCCGCCCCAAGATTCACCAGTCCCTTTCGGGAGCAGGATGT
GGCTGAGGGGGAGGAGTTGGCGGGTGGAGGGCAGGTCGATTGGTTGGACG
AGCAGCATCCGCTGACCATTTCCCGACCGCCAAGAGCAGGACGCAGCGAG
CGGCAGGCAGAAGAGGATCAGGTGGACCGCTGTCGTCTCTTTGTCGAGGG
GGATCCCACCAAGAATGAGCTGTACAGCCCCGAGTATCCCAACTTGTATC
CGAAGAACATCAACTGCACCCGGGTGATAACAGCGCCAAAGGGACAAATC
ATACGCCTGGACTTTCGCAACTCGTTTAATATCGAGGCCAAGGAGGGGTG
CAAATTTGATTTTCTCGAAATACGAGATGGCCAGTACGGTTTCTCTACGC
TGATTGGCAAGTTCTGCGGCACCGACTTTCCGCCGGAGATCACCTCGAAG
GAGCGGTATTTGTGGCTTCATTTCCACTCCGACGAGACCATCGAGTACAC
CGGATTCAGTGCGGTCTATGAGTATCTGGACAGGAGTCGGGATGCGCCCA
GCACCGATCTCAACTGCACCATCGATAAGGGCGGCTTCGAGGGCTTCATC
AACTCCACGGATGTTCCGGCCGAGATCTGGGAGCAGGTCAATCGCAATAA
GATCGCGCTGGACTGCATCTGGCGCATTCAGGTCAAGGAGAATTGGAAGA
TATTTCTCAAGTTTCTGGACTTCAAGCTGAGCAAGCCGAACGATTGTCAA
ACCAACTTCCTGGATATATTCCCGGAGCAGACGGTGATGCCACTGAGGGT
TAAGAACTTTTGCGGTTCAGCTGGCGAGAGTATTACGGCGGAGTCAAATA
TCCTGCACTTGCGCTTCTACGCAGATCAAACCGCGATTAACTCGACATTT
GGCATTCTGTTCACGGCGTTCCGGGAACGTGGAGCTGCCTGCACCGAGGA
CGAGTACGATTGCGAGGACGCGACCTGCATATCAAAGGATTTGAAATGTA
ATAACCTAGACAATTGTAAATTTCGATGGGACGAGGAGGGCTGCACGAGC
GAGGCGGCCGGCCAATCGGAGCACGTGGTCATCATCGTGATTGTGTTTGG
CCTGATACTCGGCGGAATGGTCATTACGTTCATCGTCAATTGCATACGCA
AGATAATACGTGATCAGAAGATAATACGCGAGCACATCCGAGAGTCGAAG
GAGAGCAAGCTGGACGAGATGGGCCGCAACTCCAAGGGACGCTCGCGGGA
GAATATATCCAGGCAAAAGCACTCGCAAACATCGCTGCAGATCCTGGATG
ATGTATCCAATCGATACTATCGCGAGGCGGTTCCACTATCGTCGCAGTCC
AGTAAGGCGGACTTCAAGGAGAAGGAGCACAGCATTCTGCGCCGCCATGC
CGATATGACGCAAACAAGTCTCTGCGGCGTTGGCGAGGATGATGGCGAAT
CCTCATCGACGACGACGGCCACACACGAGATGATGACTAAGGCGGCCATG
TCGGCGGTGCCCTCCAATGCATGCGACATGGGCTGTCAGACGAGGGAATC
GCTGTTTGTCAACAGTCCCGGAATTGGACCGTCGGCGGGTCCTGGTGTTG
GTGTTGCTGTTGGCATCGGTATCGCCGTCGCTCCCGGCGGCGGTGTTGCC
ACGCTAATGAGACAAAAGTCCAGCTCCTCATCGCTGGGCGTTGGTGGTGG
CGCTGGGGGCGGGGCCATGATGATGCCGCCCCCGCCACCGCGATTCTTCT
CCACCTTTGGCTATGAGCCATCGGGATCGCCGGCGGTGGCAACGCTGACA
AGGCGCAGCATGCACCAGCAGCAGCAACATCCGCAGATGCCGCGCCAAGA
GTCCATGGAGATGGAGGAGCGACACAGCGGCCGCTCGCACTACGGCGGCC
TGCTGGTGACCTCGACGGCCAAGCAGCCGCAGGAGATCTGTCACCATCAT
CACCAGCATCAGCAGCAGCATCAGCAGCAGCATCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAACAGCAACAGCAGCAGCGCATGCACCATGCACATCCGC
ATCCGCCGAGTATTGCTGCACGTTTGCCTGCGATGAAGGGGCATGGAACA
GTCATGGGACAGACTACGATCCTGCCCGGCGGCAACAAGCAGCAGCAGCA
ACATCAGCAAAAGAACGAGGAGTCCAAAGTGTTTATCGACATACGGAATT
CAGCGCCAGACGTGATTATCATGACGTCCCATTGAAAGCTTTCTAGACCA
T
BS33392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RB | 2469 | CG44328-PB | 1..2469 | 17..2485 | 12330 | 100 | Plus |
| Neto-RA | 2034 | CG44328-PA | 1..1415 | 17..1431 | 7075 | 100 | Plus |
| wake-RG | 4947 | CG45058-PG | 610..696 | 2192..2278 | 255 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RB | 6903 | CG44328-RB | 597..3065 | 17..2485 | 12330 | 100 | Plus |
| Neto-RA | 3362 | CG44328-RA | 597..2011 | 17..1431 | 7075 | 100 | Plus |
| wake-RH | 6723 | CG45058-RH | 983..1069 | 2192..2278 | 255 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13522752..13523444 | 1793..2485 | 3465 | 100 | Plus |
| X | 23542271 | X | 13495840..13496206 | 167..533 | 1835 | 100 | Plus |
| X | 23542271 | X | 13500494..13500823 | 620..949 | 1650 | 100 | Plus |
| X | 23542271 | X | 13520899..13521184 | 1510..1795 | 1415 | 99.7 | Plus |
| X | 23542271 | X | 13483136..13483286 | 17..167 | 755 | 100 | Plus |
| X | 23542271 | X | 13502457..13502598 | 1046..1187 | 710 | 100 | Plus |
| X | 23542271 | X | 13506098..13506231 | 1297..1430 | 670 | 100 | Plus |
| X | 23542271 | X | 13504034..13504144 | 1187..1297 | 555 | 100 | Plus |
| X | 23542271 | X | 13500949..13501049 | 948..1048 | 505 | 100 | Plus |
| X | 23542271 | X | 13499794..13499883 | 530..619 | 450 | 100 | Plus |
| X | 23542271 | X | 13520518..13520601 | 1430..1513 | 420 | 100 | Plus |
| 3R | 32079331 | 3R | 22658293..22658379 | 2192..2278 | 255 | 86.2 | Plus |
| 2R | 25286936 | 2R | 13823854..13823936 | 2274..2192 | 220 | 84.3 | Minus |
| X | 23542271 | X | 10700026..10700112 | 2192..2278 | 210 | 82.8 | Plus |
| 2R | 25286936 | 2R | 13823876..13823963 | 2279..2192 | 200 | 81.8 | Minus |
| 3L | 28110227 | 3L | 6080302..6080359 | 2222..2279 | 185 | 87.9 | Plus |
Blast to na_te.dros performed 2014-11-28 15:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 2055..2279 | 286 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2671 | 2038..2415 | 266 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6523..6891 | 2053..2415 | 203 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..7035 | 2019..2274 | 166 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..7034 | 2056..2303 | 164 | 57.3 | Plus |
BS33392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:27 Download gff for
BS33392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RB | 597..3064 | 17..2484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:23 Download gff for
BS33392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RB | 597..3064 | 17..2484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:23 Download gff for
BS33392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13520902..13521183 | 1513..1794 | 99 | -> | Plus |
| X | 13483136..13483286 | 17..167 | 100 | -> | Plus |
| X | 13495841..13496206 | 168..533 | 100 | -> | Plus |
| X | 13499798..13499883 | 534..619 | 100 | -> | Plus |
| X | 13500494..13500823 | 620..949 | 100 | -> | Plus |
| X | 13500951..13501048 | 950..1047 | 100 | -> | Plus |
| X | 13502459..13502598 | 1048..1187 | 100 | -> | Plus |
| X | 13504035..13504144 | 1188..1297 | 100 | -> | Plus |
| X | 13506099..13506230 | 1298..1429 | 100 | -> | Plus |
| X | 13520518..13520600 | 1430..1512 | 100 | -> | Plus |
| X | 13522754..13523443 | 1795..2484 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:27 Download gff for
BS33392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13377169..13377319 | 17..167 | 100 | -> | Plus |
| arm_X | 13389874..13390239 | 168..533 | 100 | -> | Plus |
| arm_X | 13393831..13393916 | 534..619 | 100 | -> | Plus |
| arm_X | 13394527..13394856 | 620..949 | 100 | -> | Plus |
| arm_X | 13394984..13395081 | 950..1047 | 100 | -> | Plus |
| arm_X | 13396492..13396631 | 1048..1187 | 100 | -> | Plus |
| arm_X | 13398068..13398177 | 1188..1297 | 100 | -> | Plus |
| arm_X | 13400132..13400263 | 1298..1429 | 100 | -> | Plus |
| arm_X | 13414551..13414633 | 1430..1512 | 100 | -> | Plus |
| arm_X | 13414935..13415216 | 1513..1794 | 99 | -> | Plus |
| arm_X | 13416787..13417476 | 1795..2484 | 100 | | Plus |
BS33392.pep Sequence
Translation from 16 to 2484
> BS33392.pep
MRRRGSTCSAQQPQQRPHKQQQQQQQQNQRLIPGQRCSLLMLLIVGQAVY
ASAGSEIIANRSASAGESLIMLSNFTVATPPPAPRFTSPFREQDVAEGEE
LAGGGQVDWLDEQHPLTISRPPRAGRSERQAEEDQVDRCRLFVEGDPTKN
ELYSPEYPNLYPKNINCTRVITAPKGQIIRLDFRNSFNIEAKEGCKFDFL
EIRDGQYGFSTLIGKFCGTDFPPEITSKERYLWLHFHSDETIEYTGFSAV
YEYLDRSRDAPSTDLNCTIDKGGFEGFINSTDVPAEIWEQVNRNKIALDC
IWRIQVKENWKIFLKFLDFKLSKPNDCQTNFLDIFPEQTVMPLRVKNFCG
SAGESITAESNILHLRFYADQTAINSTFGILFTAFRERGAACTEDEYDCE
DATCISKDLKCNNLDNCKFRWDEEGCTSEAAGQSEHVVIIVIVFGLILGG
MVITFIVNCIRKIIRDQKIIREHIRESKESKLDEMGRNSKGRSRENISRQ
KHSQTSLQILDDVSNRYYREAVPLSSQSSKADFKEKEHSILRRHADMTQT
SLCGVGEDDGESSSTTTATHEMMTKAAMSAVPSNACDMGCQTRESLFVNS
PGIGPSAGPGVGVAVGIGIAVAPGGGVATLMRQKSSSSSLGVGGGAGGGA
MMMPPPPPRFFSTFGYEPSGSPAVATLTRRSMHQQQQHPQMPRQESMEME
ERHSGRSHYGGLLVTSTAKQPQEICHHHHQHQQQHQQQHQQQQQQQQQQQ
QQQQRMHHAHPHPPSIAARLPAMKGHGTVMGQTTILPGGNKQQQQHQQKN
EESKVFIDIRNSAPDVIIMTSH*
BS33392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-PB | 822 | CG44328-PB | 1..822 | 1..822 | 4347 | 100 | Plus |
| Neto-PA | 677 | CG44328-PA | 1..472 | 1..472 | 2506 | 99.8 | Plus |
| tld-PA | 1067 | CG6868-PA | 492..746 | 154..378 | 250 | 29.6 | Plus |
| tok-PC | 1464 | CG6863-PC | 847..1111 | 146..382 | 247 | 29.3 | Plus |
| tok-PA | 1464 | CG6863-PA | 847..1111 | 146..382 | 247 | 29.3 | Plus |
| tok-PC | 1464 | CG6863-PC | 1169..1434 | 152..423 | 202 | 23 | Plus |
| tld-PA | 1067 | CG6868-PA | 618..873 | 123..350 | 192 | 25.1 | Plus |
| tld-PA | 1067 | CG6868-PA | 389..578 | 166..372 | 184 | 27.3 | Plus |
| tok-PC | 1464 | CG6863-PC | 751..1003 | 166..436 | 183 | 24.5 | Plus |
| tld-PA | 1067 | CG6868-PA | 895..1049 | 124..280 | 163 | 28.9 | Plus |
