Clone BS33394 Report

Search the DGRC for BS33394

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:333
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptSelR-RJ
Protein status:BS33394.pep: full length peptide match
Sequenced Size:611

Clone Sequence Records

BS33394.complete Sequence

611 bp assembled on 2014-01-24

GenBank Submission: KX801208

> BS33394.complete
GAAGTTATCAGTCGACATGTTTGCACTTTCTGCTCGCCACGCACTGCGGC
GCACTCGAATATTCGCCATTCCACGCTTTTTCGCAGATTCACGCCAAGAC
AGCGACAATCCGGACAAAAGGTATTCCGGACCAGCAGCGACTATGGATAA
CAAGAGCGAGAAGGTTACGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGA
CCCCGGTGCAGTATCAGGTTACCCAGGAGGCGGGCACCGAGCGACCCTTC
ACAGGTTGCTACAACAAACACTACGAGAAGGGCGTGTACCAGTGCATCGT
GTGCCACCAGGATCTGTTCAGCTCGGAGACCAAGTACGACTCGGGATGCG
GATGGCCGGCCTTCAACGATGTCCTAGACAAGGGCAAGGTCACGCTGCAC
CGCGATGCCAGCATACCAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCG
ATGCTCCGCCCATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGC
ATCGACGCTTCTGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCG
ACGCCATCGAAGGCGGATCCATCGACGGCCTCGTCCAAGAAATAAAAGCT
TTCTAGACCAT

BS33394.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RJ 579 CG6584-PJ 1..579 17..595 2895 100 Plus
SelR-RH 453 CG6584-PH 1..453 143..595 2265 100 Plus
SelR-RC 594 CG6584-PC 1..527 17..543 2170 94.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-RJ 2392 CG6584-RJ 250..828 17..595 2895 100 Plus
SelR-RH 2277 CG6584-RH 201..713 83..595 2565 100 Plus
SelR-RG 2298 CG6584-RG 201..734 83..595 2320 96.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10865451..10865628 595..418 890 100 Minus
3R 32079331 3R 10866807..10866979 256..84 865 100 Minus
3R 32079331 3R 10866528..10866698 420..250 855 100 Minus
3R 32079331 3R 10867972..10868041 86..17 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 14:56:02 has no hits.

BS33394.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:49 Download gff for BS33394.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 256..819 23..586 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:09 Download gff for BS33394.complete
Subject Subject Range Query Range Percent Splice Strand
SelR-RJ 256..819 23..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:09 Download gff for BS33394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10865460..10865626 420..586 100 <- Minus
3R 10866529..10866693 255..419 100 <- Minus
3R 10866809..10866976 87..254 100 <- Minus
3R 10867972..10868035 23..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:49 Download gff for BS33394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6692531..6692698 87..254 100 <- Minus
arm_3R 6693694..6693757 23..86 100   Minus
arm_3R 6692251..6692415 255..419 100 <- Minus
arm_3R 6691182..6691348 420..586 100 <- Minus

BS33394.pep Sequence

Translation from 16 to 594

> BS33394.pep
MFALSARHALRRTRIFAIPRFFADSRQDSDNPDKRYSGPAATMDNKSEKV
TVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDL
FSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHM
GHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK*

BS33394.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
SelR-PJ 192 CG6584-PJ 1..192 1..192 1033 100 Plus
SelR-PC 197 CG6584-PC 1..183 1..189 905 88.9 Plus
SelR-PE 208 CG6584-PE 1..194 1..189 891 84.5 Plus
SelR-PH 150 CG6584-PH 1..150 43..192 817 100 Plus
SelR-PG 157 CG6584-PG 1..157 43..192 799 95.5 Plus