BS33394.complete Sequence
611 bp assembled on 2014-01-24
GenBank Submission: KX801208
> BS33394.complete
GAAGTTATCAGTCGACATGTTTGCACTTTCTGCTCGCCACGCACTGCGGC
GCACTCGAATATTCGCCATTCCACGCTTTTTCGCAGATTCACGCCAAGAC
AGCGACAATCCGGACAAAAGGTATTCCGGACCAGCAGCGACTATGGATAA
CAAGAGCGAGAAGGTTACGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGA
CCCCGGTGCAGTATCAGGTTACCCAGGAGGCGGGCACCGAGCGACCCTTC
ACAGGTTGCTACAACAAACACTACGAGAAGGGCGTGTACCAGTGCATCGT
GTGCCACCAGGATCTGTTCAGCTCGGAGACCAAGTACGACTCGGGATGCG
GATGGCCGGCCTTCAACGATGTCCTAGACAAGGGCAAGGTCACGCTGCAC
CGCGATGCCAGCATACCAGGCATGGTGCGCACCGAGGTGCGCTGCTCCCG
ATGCTCCGCCCATATGGGCCACGTCTTCGATGATGGACCGCCGCCCAAGC
ATCGACGCTTCTGCATCAATTCCGCGTCCATCGATTTCGTGAAGAGTGCG
ACGCCATCGAAGGCGGATCCATCGACGGCCTCGTCCAAGAAATAAAAGCT
TTCTAGACCAT
BS33394.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RJ | 579 | CG6584-PJ | 1..579 | 17..595 | 2895 | 100 | Plus |
SelR-RH | 453 | CG6584-PH | 1..453 | 143..595 | 2265 | 100 | Plus |
SelR-RC | 594 | CG6584-PC | 1..527 | 17..543 | 2170 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-RJ | 2392 | CG6584-RJ | 250..828 | 17..595 | 2895 | 100 | Plus |
SelR-RH | 2277 | CG6584-RH | 201..713 | 83..595 | 2565 | 100 | Plus |
SelR-RG | 2298 | CG6584-RG | 201..734 | 83..595 | 2320 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10865451..10865628 | 595..418 | 890 | 100 | Minus |
3R | 32079331 | 3R | 10866807..10866979 | 256..84 | 865 | 100 | Minus |
3R | 32079331 | 3R | 10866528..10866698 | 420..250 | 855 | 100 | Minus |
3R | 32079331 | 3R | 10867972..10868041 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:56:02 has no hits.
BS33394.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:49 Download gff for
BS33394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RJ | 256..819 | 23..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:09 Download gff for
BS33394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SelR-RJ | 256..819 | 23..586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:09 Download gff for
BS33394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10865460..10865626 | 420..586 | 100 | <- | Minus |
3R | 10866529..10866693 | 255..419 | 100 | <- | Minus |
3R | 10866809..10866976 | 87..254 | 100 | <- | Minus |
3R | 10867972..10868035 | 23..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:49 Download gff for
BS33394.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6692531..6692698 | 87..254 | 100 | <- | Minus |
arm_3R | 6693694..6693757 | 23..86 | 100 | | Minus |
arm_3R | 6692251..6692415 | 255..419 | 100 | <- | Minus |
arm_3R | 6691182..6691348 | 420..586 | 100 | <- | Minus |
BS33394.pep Sequence
Translation from 16 to 594
> BS33394.pep
MFALSARHALRRTRIFAIPRFFADSRQDSDNPDKRYSGPAATMDNKSEKV
TVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDL
FSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHM
GHVFDDGPPPKHRRFCINSASIDFVKSATPSKADPSTASSKK*
BS33394.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SelR-PJ | 192 | CG6584-PJ | 1..192 | 1..192 | 1033 | 100 | Plus |
SelR-PC | 197 | CG6584-PC | 1..183 | 1..189 | 905 | 88.9 | Plus |
SelR-PE | 208 | CG6584-PE | 1..194 | 1..189 | 891 | 84.5 | Plus |
SelR-PH | 150 | CG6584-PH | 1..150 | 43..192 | 817 | 100 | Plus |
SelR-PG | 157 | CG6584-PG | 1..157 | 43..192 | 799 | 95.5 | Plus |