BS33395.complete Sequence
1133 bp assembled on 2014-01-24
GenBank Submission: KX800539
> BS33395.complete
GAAGTTATCAGTCGACATGAGCTTGCCAACCGACGGTCTAAACATGGAGA
TCACCCCAAGCCCCACCCTGGCTGCCACGAGTCGCGGCGACTTGGAAAAA
GTGCTGGCTATGCTGGTCCTCGGACTCGGGAGTCTTTTGTTCGGATTGCT
GCCCGCCTTTATATCGGAACGGAATCGTCGCCGCTTCCCGCTGACCGCAT
CCCTGCTCCTGTGCTTCGGAGCGGGCATTCTGCTAGCCACCGCACTGGTG
CACATTCTGCCCGAGGTGCGCGAACAAATGGACTCGAAATTCGCTGAGGT
TGCCATGTGCGGCGGGTTCTTCATCATCTACTTTATCGACGAGTTCATAC
ACTACTTCTTTGGCGAGGCCATTCAGCACACTCATGCCCACGATGCAGAG
ACTCCAGCAACCGAGCCACCAAGACGTCCCACTAATGACAATGGTTATGG
CGCAGTGGACGAACGAGCGCCCCTTTTATCAGCGGAACCCAATACGTCAC
ATGGGCATTCGCACCATCATAGCCACGATCATGACCACAATCACCCGGCC
AGCGCATCTGGCTGTAATGATGCCAGTGTAGAGGACGCCAACGCCCGCAT
CTGCCACACCAGCCACACGGAACCCTGCGCCCAATCCATGACAGGCACTC
TGGGTCTCTTTGTCGCCCTGTCACTGCACTCGGCCATCGAAGGACTCGCC
ATCGGCGTTCAGAACTCTTCCACAAAGGTTCTGTTTCTTCTAGGGGCCGT
CGCCTGCCACAAGTTCGTGATGGGCTTTTGTCTGGGGCTCGAGTTCCGCT
CGAATCCGCAGACGAGTTTTCGCGCCCAGTTCGTCGGCATTTCGGTGTTT
GCCCTGGGCGCCGTCATTGGCATTGGCCTGGGCATGCTTATCGTGGACGT
GCCCGCCGCTTGGTCCAGCAAAACTCTGCCTATCGTCCAAGCTCTGGCCG
GAGGCACACTCTTCTACGTCACCGTCTGCGAGGTGATACCGCGCGAGAAG
GCGCGCTGGCACTCGAACTCAACGCGACGCTGGGCGGGATTTGCACAGTT
TGCAACTGTGCTCGCCGGTTTTGCGACCATGTGCATCATAAACTTTTATC
TTTCTGATGAGGATTAGAAGCTTTCTAGACCAT
BS33395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip88E-RB | 1101 | CG4334-PB | 1..1101 | 17..1117 | 5490 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip88E-RB | 1539 | CG4334-RB | 102..1203 | 17..1118 | 5495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15269735..15270115 | 726..1106 | 1890 | 99.7 | Plus |
| 3R | 32079331 | 3R | 15269079..15269340 | 264..525 | 1310 | 100 | Plus |
| 3R | 32079331 | 3R | 15268763..15269013 | 17..267 | 1255 | 100 | Plus |
| 3R | 32079331 | 3R | 15269404..15269607 | 526..729 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:56:06 has no hits.
BS33395.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:50 Download gff for
BS33395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4334-RB | 102..1202 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:11 Download gff for
BS33395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip88E-RB | 102..1202 | 17..1117 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:11 Download gff for
BS33395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15268763..15269011 | 17..265 | 100 | -> | Plus |
| 3R | 15269081..15269340 | 266..525 | 100 | -> | Plus |
| 3R | 15269404..15269605 | 526..727 | 100 | -> | Plus |
| 3R | 15269737..15270123 | 728..1117 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:50 Download gff for
BS33395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11094485..11094733 | 17..265 | 100 | -> | Plus |
| arm_3R | 11094803..11095062 | 266..525 | 100 | -> | Plus |
| arm_3R | 11095126..11095327 | 526..727 | 100 | -> | Plus |
| arm_3R | 11095459..11095845 | 728..1117 | 98 | | Plus |
BS33395.pep Sequence
Translation from 16 to 1116
> BS33395.pep
MSLPTDGLNMEITPSPTLAATSRGDLEKVLAMLVLGLGSLLFGLLPAFIS
ERNRRRFPLTASLLLCFGAGILLATALVHILPEVREQMDSKFAEVAMCGG
FFIIYFIDEFIHYFFGEAIQHTHAHDAETPATEPPRRPTNDNGYGAVDER
APLLSAEPNTSHGHSHHHSHDHDHNHPASASGCNDASVEDANARICHTSH
TEPCAQSMTGTLGLFVALSLHSAIEGLAIGVQNSSTKVLFLLGAVACHKF
VMGFCLGLEFRSNPQTSFRAQFVGISVFALGAVIGIGLGMLIVDVPAAWS
SKTLPIVQALAGGTLFYVTVCEVIPREKARWHSNSTRRWAGFAQFATVLA
GFATMCIINFYLSDED*
BS33395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip88E-PB | 366 | CG4334-PB | 1..366 | 1..366 | 1916 | 100 | Plus |
| Zip89B-PA | 495 | CG6898-PA | 56..403 | 28..355 | 354 | 29.8 | Plus |
| Zip42C.1-PA | 352 | CG9428-PA | 24..342 | 28..365 | 287 | 27.9 | Plus |
| Zip42C.2-PB | 310 | CG9430-PB | 159..276 | 212..329 | 203 | 38.7 | Plus |
