BS33396.complete Sequence
2396 bp assembled on 2014-03-03
GenBank Submission: KX801192
> BS33396.complete
GAAGTTATCAGTCGACATGGCCGAACAGAAGCAGCTGGAAGCAATTGCGA
ATGAGACCTCATCAGTCACCGGATTGAGACGTCAGCCCACCAAATATCCC
CACGGCCTCAACATCACGGTGCAGACCATCGACGATGATAATGAGGGATC
TCCGAAAGATCACAGTGACTACACCCGCGCCTCCGGCGATTCGTGCTGGA
GTAAGACACAGAAATACCATATTGGAATGCTGGGGAGTCCCGAAACCCTG
GCCGAACTTCAAGTTCGACGATACAAGTACCCATTGACGGCTAATTATTA
TTTGAACAGCAAGTTGGAAAGGCCGGAAAAGCCAACACCCTGGATGCTGT
TGGGTTATGCTCGAAGTGTGTGCAGGTGGAAGTACCTGAGGTGGCCCATT
ATATTTGTGGCCAGCGTTTTGCTGTTCTTCGGGCTGATCACCTACTGTCT
ATGGCTTCACGATGTCAGTGTGGCTAGAGCAAAATTCCTTCAGCGTCGCT
ATGAAGCCACTCTGACATCCACGAGCTCGAGCAGCAACGAGGTCTGGGAT
GAGGAAACCACCAGCTCCACCGAAAGGTCGCCCCAGGAAACCACACGACT
CGAAGACATGGATGACAGCGATGAGAGCACGGAGCTGCCTGAAATAGCGT
TTGGTGACGATGGAGACCCAGAGGCTGGAGGTGAAGACGGCGATGGTGAC
TACGATGACACCTTGCTGCCAGCGGACAGTATTAGATTCACCTCTGGGCA
TCAAAACAGCTTTGGGGTTCCCATCGAGCAAGACAAGAGAATGCTGCAGT
TGCTCAAAGAATTACTGCATAAACCCCAGGCGACTCCAGCTGGTAACGAG
CCTACTCTGACCCGGGTGTCCCCCACTCTGCCACCACCCTTGTCGGCCAG
TGGGCGGCCCACAGAGGCGATGGCCTTGACCACCCCCTCAACGACAAACA
GTGGCTGCCAGTCGACCATGCTGCCCATGTGCCAGGGAGTGCTCGACTAC
GATCTCACCTTTAATCGCGAGGGTGCGGCACCGCGGGACGCCGTATCCAT
GGCAGCATACGACAGCCTCATCCGGGCCAATTGCTCCGTCAGGGCGGCTG
AGTTCATTTGTGGCGCCCTGGAACCCGAGTGTCGACCCCTGCATATCGGA
CAGCTGCCTCCTTGTCGTCGCATCTGCAAGGCCATTTTGGAAGCCTGTTC
CATACCGATTTACAATTCGGATGTCCTTGGCGAACTCTTCGACTGCAACC
TATATCCCGATGCCCACGAGAGCCACAAGTGCGAGGATCCCACAAGGCGA
CGTGACTATTGCTACGGAAATGAGTTCCAATGCCATGATGGGAGTTGCAT
TCCCCAGAACTGGCAGTGTGACAAGATCAAGGATTGCCAAGGTGGCGAGG
ATGAGGATGAGCAGTGTTTGGTTTGCGAACCGGACGAATTCCGCTGCCGT
TCAAATGAAAAGTGTCTCGTAGAAAAGTATCGATGCGATCAAAATATTGA
TTGCATGGATGGAAGTGATGAACAAGACTGCGATGAGTACGGCTCCGGAG
ATTTGGCTCCATTCGATGAGTCTGAACTGAATGCTTTTCCAAGGGTATTC
ACCTATGCCAGTTTCTTATCACCTAACGAAACGAATGACAAAGTATATAC
GTACATTACGGCCACCACCGATGAGGACGCAGGCACGGAAACCAAGTTCC
AGATTCATCAGGTGGCCGCGCCGGCACCTCCAGTGAATTCCAGCGCAGAG
GAAGGCGCTGGAGGTCCTAAAGGATTTGTAAACTTTCGTGACAGCAAGGA
GATAATGATGACCAGCGATTCGGAGACCAAGTTCAAGTATTCCCAGAGAG
CCAATCGAACTTCGGTGAAATTTAGCGTATCAGCACCCACAACTCCAGCG
GCCAGAACATCAAGTGCGATTCCCAGTTCAGCTTTGGTTCAGCAGCGCGA
AAGAACCACAAGTACCACCACCACCAGCACCACCACGAGTACCACCACCA
GTAGCATTACCAGCACTCCCAGCATCACCAGCACCACTTTAATCCCAATT
AATGCAGCCACATCAGAGCCCAATCCCTACGAAGTGGTAACATCCCTAGG
AGGATGTCCTCCCCAAGAGCTTCGTTGTGTTAGTGGCAAGTGCATCACTG
TCAGTCAATTGTGCGATAAGCAAATTGATTGTCCCGATGCTGCCGACGAA
CTAATGTGCGTTTATCGGGAGCGCCCAAGTAGGAGGCGCCTCACCTCGAC
CACTGCACCACCCACAACATCATCGGCACCACCAGAGACAAGCACTGCAA
CAACAACCACGGGTCCGTTGAGCAGTACAAGGCGTTCGTTGAGGACCACG
CCCAATCGAAGTCGAAAGCCCAAGTCTTAGAAGCTTTCTAGACCAT
BS33396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6739-RA | 2364 | CG6739-PA | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| CG6739-RB | 1770 | CG6739-PB | 1..1762 | 17..1778 | 8810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6739-RA | 2713 | CG6739-RA | 143..2507 | 17..2381 | 11825 | 100 | Plus |
| CG6739-RB | 2718 | CG6739-RB | 143..2512 | 17..2381 | 11740 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7613405..7614199 | 17..811 | 3975 | 100 | Plus |
| 2L | 23513712 | 2L | 7614842..7615439 | 1181..1778 | 2990 | 100 | Plus |
| 2L | 23513712 | 2L | 7615575..7615967 | 1778..2170 | 1965 | 100 | Plus |
| 2L | 23513712 | 2L | 7614326..7614695 | 812..1181 | 1850 | 100 | Plus |
| 2L | 23513712 | 2L | 7616115..7616327 | 2169..2381 | 1065 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 15:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2400 | 2247..2307 | 134 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2468..2532 | 2243..2307 | 127 | 66.2 | Plus |
BS33396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:22 Download gff for
BS33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6739-RA | 143..2506 | 17..2380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:19 Download gff for
BS33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6739-RA | 143..2506 | 17..2380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:19 Download gff for
BS33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7613405..7614199 | 17..811 | 100 | -> | Plus |
| 2L | 7614326..7614695 | 812..1181 | 100 | -> | Plus |
| 2L | 7614843..7615439 | 1182..1778 | 100 | -> | Plus |
| 2L | 7615576..7615967 | 1779..2170 | 100 | -> | Plus |
| 2L | 7616117..7616326 | 2171..2380 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:22 Download gff for
BS33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7613405..7614199 | 17..811 | 100 | -> | Plus |
| arm_2L | 7614326..7614695 | 812..1181 | 100 | -> | Plus |
| arm_2L | 7614843..7615439 | 1182..1778 | 100 | -> | Plus |
| arm_2L | 7615576..7615967 | 1779..2170 | 100 | -> | Plus |
| arm_2L | 7616117..7616326 | 2171..2380 | 100 | | Plus |
BS33396.pep Sequence
Translation from 16 to 2379
> BS33396.pep
MAEQKQLEAIANETSSVTGLRRQPTKYPHGLNITVQTIDDDNEGSPKDHS
DYTRASGDSCWSKTQKYHIGMLGSPETLAELQVRRYKYPLTANYYLNSKL
ERPEKPTPWMLLGYARSVCRWKYLRWPIIFVASVLLFFGLITYCLWLHDV
SVARAKFLQRRYEATLTSTSSSSNEVWDEETTSSTERSPQETTRLEDMDD
SDESTELPEIAFGDDGDPEAGGEDGDGDYDDTLLPADSIRFTSGHQNSFG
VPIEQDKRMLQLLKELLHKPQATPAGNEPTLTRVSPTLPPPLSASGRPTE
AMALTTPSTTNSGCQSTMLPMCQGVLDYDLTFNREGAAPRDAVSMAAYDS
LIRANCSVRAAEFICGALEPECRPLHIGQLPPCRRICKAILEACSIPIYN
SDVLGELFDCNLYPDAHESHKCEDPTRRRDYCYGNEFQCHDGSCIPQNWQ
CDKIKDCQGGEDEDEQCLVCEPDEFRCRSNEKCLVEKYRCDQNIDCMDGS
DEQDCDEYGSGDLAPFDESELNAFPRVFTYASFLSPNETNDKVYTYITAT
TDEDAGTETKFQIHQVAAPAPPVNSSAEEGAGGPKGFVNFRDSKEIMMTS
DSETKFKYSQRANRTSVKFSVSAPTTPAARTSSAIPSSALVQQRERTTST
TTTSTTTSTTTSSITSTPSITSTTLIPINAATSEPNPYEVVTSLGGCPPQ
ELRCVSGKCITVSQLCDKQIDCPDAADELMCVYRERPSRRRLTSTTAPPT
TSSAPPETSTATTTTGPLSSTRRSLRTTPNRSRKPKS*
BS33396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6739-PA | 787 | CG6739-PA | 1..787 | 1..787 | 4195 | 100 | Plus |
| CG6739-PB | 589 | CG6739-PB | 1..587 | 1..587 | 3183 | 100 | Plus |
| trol-PAG | 3105 | CG33950-PAG | 514..882 | 414..731 | 277 | 25 | Plus |
| trol-PAM | 3967 | CG33950-PAM | 474..842 | 414..731 | 277 | 25 | Plus |
| trol-PAW | 4007 | CG33950-PAW | 514..882 | 414..731 | 277 | 25 | Plus |
| trol-PAG | 3105 | CG33950-PAG | 808..1069 | 432..731 | 180 | 23.8 | Plus |
| trol-PAM | 3967 | CG33950-PAM | 768..1029 | 432..731 | 180 | 23.8 | Plus |
| trol-PAG | 3105 | CG33950-PAG | 949..1082 | 382..518 | 165 | 32.1 | Plus |
| trol-PAM | 3967 | CG33950-PAM | 909..1042 | 382..518 | 165 | 32.1 | Plus |
