BS33403.complete Sequence
1217 bp assembled on 2014-01-24
GenBank Submission: KX806265
> BS33403.complete
GAAGTTATCAGTCGACATGGCTGGCCATCAGTCGCTGGCACTTTTGTTGG
CCACGCTAATTAGCAGCTGGCCAAAAGCCTCTTGGGGCGCCACTGGAAAC
GGTAGTATCATAAGCGTTAGCAACAGCAGTGGCAACAACTATGCATTCAC
CTCGGAACACACGGATCATTCGGATCACAATGCCAACGACTCCATGGAAT
ATGATGCAGAGAGTGTGGCCCTCGAACGGATCGTATCCACAATAGTTCCC
GTATTCTTTGGCATTATCGGATTCGCAGGACTTTTGGGCAATGGTCTGGT
TATTCTGGTGGTTGTGGCCAACCAGCAGATGCGCTCCACCACCAATCTGC
TGATAATCAACCTGGCCGTCTCGGACATTCTGTTCGTCATCTTCTGTGTC
CCGTTCACGGCTACCGATTACGTGCTGCCGGAGTGGCCGTTTGGCAATGT
GTGGTGCAAGTTTGTCCAGTACATGATTGTGGTTACGTGCCACTGCAGTG
TTTACACGCTGGTGCTGATGTCCTTTGATCGCTTCCTGGCCGTCGTTCAT
CCCGTGACTAGCATGTCCCTGCGAACGGAGCGCAATGCCACACTGGCCAT
CATGTGCGCCTGGATAACGATTGTGACGACTGCGATTCCGGTGGCACTTT
CGCACTCGGTGAGGATTTATCAGTACCACGGAAATGCTGGCACCGCTTGC
GTCTTTTCCACGGAGGAGGAGATCTGGAGTCTCGTCGGTTTTCAGGTCTC
ATTCTTTCTATCGTCATATGTGGCACCATTGACGCTGATTTGTTTCCTAT
ATATGGGAATGCTGGCTCGTCTTTGGAAAAGTGCTCCTGGCTGCAAACCT
TCCGCAGAGTCACGAAAGGGAAAAAGGCGCGTCACCCGAATGGTTGTTGT
TGTCGTATTGGCATTCGCCATCTGTTGGCTGCCCATTCATGTCATCCTCG
TGCTAAAGGCACTGAATCTTTATGGCGGCAGCCACTTATCGGTCATTATT
CAGATTATATCCCATGTGGTGGCGTACACGAATTCGTGCATCAATCCGAT
ACTGTATGCCTTTCTATCCGACAACTTTCGCAAGGCATTCCGCAAGGTGG
TCTGGTGTGGAAGTCCGCCACCTTTGATGACCAATCAACAGGTGACCAAG
ACAACGCGAACTGCAACCGGAAACGGAACGTCCAATATTGAAATGCTCTA
AAAGCTTTCTAGACCAT
BS33403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R1-RD | 1185 | CG2872-PD | 1..1185 | 17..1201 | 5925 | 100 | Plus |
| AstA-R1-RB | 1185 | CG2872-PB | 1..1185 | 17..1201 | 5925 | 100 | Plus |
| AstA-R2-RC | 1074 | CG10001-PC | 172..429 | 296..553 | 285 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R1-RD | 3655 | CG2872-RD | 553..1737 | 17..1201 | 5925 | 100 | Plus |
| AstA-R1-RB | 3704 | CG2872-RB | 602..1786 | 17..1201 | 5925 | 100 | Plus |
| AstA-R2-RC | 1994 | CG10001-RC | 929..1186 | 296..553 | 285 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3645471..3645762 | 17..308 | 1460 | 100 | Plus |
| X | 23542271 | X | 3655580..3655770 | 308..498 | 955 | 100 | Plus |
| X | 23542271 | X | 3664334..3664493 | 941..1100 | 800 | 100 | Plus |
| X | 23542271 | X | 3656667..3656819 | 595..747 | 765 | 100 | Plus |
| X | 23542271 | X | 3662154..3662278 | 740..864 | 625 | 100 | Plus |
| X | 23542271 | X | 3664559..3664665 | 1095..1201 | 535 | 100 | Plus |
| X | 23542271 | X | 3655845..3655946 | 494..595 | 510 | 100 | Plus |
| X | 23542271 | X | 3663455..3663533 | 864..942 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:56:20 has no hits.
BS33403.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:56 Download gff for
BS33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlstR-RB | 602..1784 | 17..1199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:18 Download gff for
BS33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AstA-R1-RB | 602..1784 | 17..1199 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:18 Download gff for
BS33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3645471..3645762 | 17..308 | 100 | -> | Plus |
| X | 3655581..3655770 | 309..498 | 100 | -> | Plus |
| X | 3655850..3655945 | 499..594 | 100 | -> | Plus |
| X | 3656667..3656817 | 595..745 | 100 | -> | Plus |
| X | 3662160..3662278 | 746..864 | 100 | -> | Plus |
| X | 3663456..3663531 | 865..940 | 100 | -> | Plus |
| X | 3664334..3664489 | 941..1096 | 100 | -> | Plus |
| X | 3664561..3664663 | 1097..1199 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:56 Download gff for
BS33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3539504..3539795 | 17..308 | 100 | -> | Plus |
| arm_X | 3549614..3549803 | 309..498 | 100 | -> | Plus |
| arm_X | 3549883..3549978 | 499..594 | 100 | -> | Plus |
| arm_X | 3550700..3550850 | 595..745 | 100 | -> | Plus |
| arm_X | 3556193..3556311 | 746..864 | 100 | -> | Plus |
| arm_X | 3557489..3557564 | 865..940 | 100 | -> | Plus |
| arm_X | 3558367..3558522 | 941..1096 | 100 | -> | Plus |
| arm_X | 3558594..3558696 | 1097..1199 | 100 | | Plus |
BS33403.pep Sequence
Translation from 16 to 1200
> BS33403.pep
MAGHQSLALLLATLISSWPKASWGATGNGSIISVSNSSGNNYAFTSEHTD
HSDHNANDSMEYDAESVALERIVSTIVPVFFGIIGFAGLLGNGLVILVVV
ANQQMRSTTNLLIINLAVSDILFVIFCVPFTATDYVLPEWPFGNVWCKFV
QYMIVVTCHCSVYTLVLMSFDRFLAVVHPVTSMSLRTERNATLAIMCAWI
TIVTTAIPVALSHSVRIYQYHGNAGTACVFSTEEEIWSLVGFQVSFFLSS
YVAPLTLICFLYMGMLARLWKSAPGCKPSAESRKGKRRVTRMVVVVVLAF
AICWLPIHVILVLKALNLYGGSHLSVIIQIISHVVAYTNSCINPILYAFL
SDNFRKAFRKVVWCGSPPPLMTNQQVTKTTRTATGNGTSNIEML*
BS33403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AstA-R1-PD | 394 | CG2872-PD | 1..394 | 1..394 | 2044 | 100 | Plus |
| AstA-R1-PB | 394 | CG2872-PB | 1..394 | 1..394 | 2044 | 100 | Plus |
| AstA-R2-PC | 357 | CG10001-PC | 27..355 | 63..380 | 816 | 49.5 | Plus |
| AstA-R2-PA | 357 | CG10001-PA | 27..355 | 63..380 | 816 | 49.5 | Plus |
| AstA-R2-PB | 350 | CG10001-PB | 27..326 | 63..360 | 791 | 51 | Plus |
