BS33406.complete Sequence
1796 bp assembled on 2014-07-17
GenBank Submission: KX803708
> BS33406.complete
GAAGTTATCAGTCGACATGCAAAGGAGCACCATGTTGCCAGGAGTGGAGC
TGCTGCTGCTGTTCCTGCTGAGCACGTCGCTGCACGCGGAGATCTCCCAC
TTGCCGATGGCCAGCAACCGCATCATTCTGGACTCCACGGAGCTGCTCCA
GAACCCGCTGATCCAGGACGCCGGTGTGCCAGCGGCCAGGGCGACGCCAC
TTCCACCGCAAAAGTGTCCTTCGCTGCAGCGGTACCGCAAGATGCTAAAG
GACTTCGACGACCTGGAGGACCTCTACGTGGACGTGCCCGTGCATATAGC
TCTGGCGGAGCGGCAGAGGAAGCGATTTGTGCTGAACCTGAACGACTCGA
CGCCGCTGACGATTCGCTTTTCGGCGCCCGTGGGCCGCAAGATGTACTAC
AATCAGACAGGAAACCCCCTTCGGCCGGCGGCAGTGGCACCTGGGCCAGG
TGTGGCTGTGGGCAGTCTGGTGCTGCCCTGCGCCCTGCGTGGCCAGTACG
ACCTCTTCGTCCTCGCCCGCCACTCGGGAGCCCTCAAGGTGGACGCCCTG
GCAGAGCATCCCCAGCACGACTGGCCCCTCCTCAACGCCACGCACCGAAT
CGCCATTCGCACCCAGAATCGCGTGCGGAAGCGCGAGATGATCGTCAAGT
GGGAAAGGAGCAAGTTTGATTTCCATGTCATGCACTATTGCCTGGTGATT
CAGAGACTCTCCATGGACACGCCGCGGATGATCTTCACCAACTTCTGCCA
GGCGGTGTCCGCCTACACGGACCAGCAGCCCATGACTCCCAGTTGCGCCG
CAGGCGGTCCCTTGGAAGGGATTTGGGGTGCTCCACCCCAGCGGGAAAGG
AGACTTAATCCTAGGCAGAACGTTCACATCGTGTGCACGGGGAAGAGGCG
CCAACAGCTGCTGCGACGCCTTCTTCCGAGGAGCAGTTACCATCTGGACC
TGTTCGGAATCCACCAGGGTAGACAGAACCTCACCCTGCGACTGGCCAGC
AGCCAGGTGAACTTTAACCGCACCCAACCTCTGGCCCTGAAGCAGCAGGC
TCTGATGCAACTCAAGATCGGTGGACAGCACGGGAAGCAGGTGTACAGCT
TCAAGGTTCCGCAGACGACTCGCCAGCTGGGGGAGCCGTTCATGAGGCAC
CTTTTGATCCCTTGCTCGGGCAGCGAAATCCGGGTGAAGCTGCTACGGCA
ACGCAGCGAGGTGGGGAAAACGGAGGCCTTCTATAGTCCAACGTACATTC
GGCAGAAGGGAGTCCTACCAGGGGAGCGCTATCTCATGCGGTTCGAGCCC
AGCAACGATGACGAGGCGTTGCGAGCTCAGAAGGTCATGGTGGCCCTGAG
CAGCGAGGCTCTGTTCCGGGATTTGCCCGAGCTGCCGCAGAACACGACAG
TCTTCAATGTGCGAACGCGGTGCAGCAGAGCCACCATTGCATGGAATGGC
TCACCGGATGAACGGGAGCTGAGCTACTGCATCATAGTGTTCAACCTGCC
GCAGCGCAATCGCAGCGTGGTGGACTTTACCAACTACTGCATGGACTTTG
TGCCCAAGCGGGTGATGCAGTACAGATACTTCGAGTGGATGACCTGCAGG
GAGAGGCAGCAGAGTCCCGACAACATCGAGACGGAGACCATACTGAACCT
GATGCCGGGTTCCAGCTACCTGGTCTACGTAACGGCCAACCTGAGCATGG
GCAAGCCGCTGCCCTACCAGGCGCTGACCCTCCACATGGCCAGTCAGTGC
CTGGACGGATCGCACGAGTCCTTCTACTAAAAGCTTTCTAGACCAT
BS33406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nord-RA | 1764 | CG30418-PA | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nord-RA | 2817 | CG30418-RA | 387..2150 | 17..1780 | 8820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24253119..24253801 | 659..1341 | 3415 | 100 | Plus |
| 2R | 25286936 | 2R | 24244707..24245014 | 17..324 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 24252802..24253054 | 408..660 | 1265 | 100 | Plus |
| 2R | 25286936 | 2R | 24254260..24254427 | 1613..1780 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 24254059..24254201 | 1472..1614 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 24253866..24254000 | 1339..1473 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 24252645..24252732 | 324..411 | 440 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 15:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2848 | 109..33 | 124 | 62.3 | Minus |
BS33406.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:53:59 Download gff for
BS33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nord-RA | 387..2148 | 17..1778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:27 Download gff for
BS33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nord-RA | 387..2148 | 17..1778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:27 Download gff for
BS33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24252805..24253054 | 411..660 | 100 | -> | Plus |
| 2R | 24244707..24245014 | 17..324 | 100 | -> | Plus |
| 2R | 24252646..24252731 | 325..410 | 100 | -> | Plus |
| 2R | 24253121..24253799 | 661..1339 | 100 | -> | Plus |
| 2R | 24253867..24254000 | 1340..1473 | 100 | -> | Plus |
| 2R | 24254061..24254201 | 1474..1614 | 100 | -> | Plus |
| 2R | 24254262..24254425 | 1615..1778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:53:59 Download gff for
BS33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20140328..20140577 | 411..660 | 100 | -> | Plus |
| arm_2R | 20132230..20132537 | 17..324 | 100 | -> | Plus |
| arm_2R | 20140169..20140254 | 325..410 | 100 | -> | Plus |
| arm_2R | 20140644..20141322 | 661..1339 | 100 | -> | Plus |
| arm_2R | 20141390..20141523 | 1340..1473 | 100 | -> | Plus |
| arm_2R | 20141584..20141724 | 1474..1614 | 100 | -> | Plus |
| arm_2R | 20141785..20141948 | 1615..1778 | 100 | | Plus |
BS33406.pep Sequence
Translation from 16 to 1779
> BS33406.pep
MQRSTMLPGVELLLLFLLSTSLHAEISHLPMASNRIILDSTELLQNPLIQ
DAGVPAARATPLPPQKCPSLQRYRKMLKDFDDLEDLYVDVPVHIALAERQ
RKRFVLNLNDSTPLTIRFSAPVGRKMYYNQTGNPLRPAAVAPGPGVAVGS
LVLPCALRGQYDLFVLARHSGALKVDALAEHPQHDWPLLNATHRIAIRTQ
NRVRKREMIVKWERSKFDFHVMHYCLVIQRLSMDTPRMIFTNFCQAVSAY
TDQQPMTPSCAAGGPLEGIWGAPPQRERRLNPRQNVHIVCTGKRRQQLLR
RLLPRSSYHLDLFGIHQGRQNLTLRLASSQVNFNRTQPLALKQQALMQLK
IGGQHGKQVYSFKVPQTTRQLGEPFMRHLLIPCSGSEIRVKLLRQRSEVG
KTEAFYSPTYIRQKGVLPGERYLMRFEPSNDDEALRAQKVMVALSSEALF
RDLPELPQNTTVFNVRTRCSRATIAWNGSPDERELSYCIIVFNLPQRNRS
VVDFTNYCMDFVPKRVMQYRYFEWMTCRERQQSPDNIETETILNLMPGSS
YLVYVTANLSMGKPLPYQALTLHMASQCLDGSHESFY*
BS33406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nord-PA | 587 | CG30418-PA | 1..587 | 1..587 | 3075 | 100 | Plus |
