BS33409.complete Sequence
833 bp assembled on 2014-01-24
GenBank Submission: KX801839
> BS33409.complete
GAAGTTATCAGTCGACATGGCTCAGCCCAGGTATGACGATGGCCTACACG
GCTACGGCATGGACTCCGGAGCCGCAGCAGCGGCCATGTACGATCCACAC
GCCGGTCACCGGCCGCCCGGACTGCAGGGCCTCCCCTCGCACCACTCTCC
GCACATGACGCACGCAGCGGCGGCGGCGGCCACAGTGGGCATGCACGGCT
ACCATTCGGGGGCCGGGGGTCATGGAACACCTAGTCATGTATCGCCGGTC
GGTAATCACCTAATGGGCGCAATACCCGAAGTACACAAACGTGATAAGGA
TGCGATTTATGAACATCCGCTATTCCCGCTTTTGGCGCTGATCTTTGAGA
AGTGCGAATTGGCCACATGTACGCCGAGGGAGCCCGGTGTGCAAGGTGGC
GATGTCTGTTCGTCGGAATCGTTCAACGAGGATATTGCAATGTTCAGTAA
ACAGATAAGATCACAGAAACCCTATTATACCGCAGATCCCGAAGTCGACT
CACTGATGGTGCAAGCAATACAAGTACTTCGGTTTCACCTTTTAGAATTA
GAAAAAGTACACGAGTTATGCGATAACTTCTGTCATCGGTATATATCGTG
TTTAAAGGGTAAAATGCCAATAGATTTAGTGATCGACGAACGGGACACCA
CCAAACCACCGGAGTTGGGATCGGCGAACGGAGAAGGGCGCAGCAACGCC
GACTCCACATCGCACACCGATGGAGCTAGTACACCAGACGTTCCCAGCAC
CCAAGACTTTTCACCGCTGGAGGAGACCTATGCCAGCTATCGCATCAAAC
ACGAGGCGGACTTTTAGAAGCTTTCTAGACCAT
BS33409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RE | 801 | CG17117-PE | 1..801 | 17..817 | 4005 | 100 | Plus |
| hth-RC | 1464 | CG17117-PC | 1..727 | 17..743 | 3635 | 100 | Plus |
| hth-RA | 1419 | CG17117-PA | 1..727 | 17..743 | 3635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RE | 3868 | CG17117-RE | 1747..2547 | 17..817 | 4005 | 100 | Plus |
| hth-RC | 6557 | CG17117-RC | 1278..2004 | 17..743 | 3635 | 100 | Plus |
| hth-RA | 4226 | CG17117-RA | 1278..2004 | 17..743 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10605088..10605369 | 312..31 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 10585743..10585928 | 742..557 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 10602786..10602933 | 460..313 | 725 | 99.3 | Minus |
| 3R | 32079331 | 3R | 10583799..10583873 | 817..743 | 375 | 100 | Minus |
| 3R | 32079331 | 3R | 10591406..10591460 | 559..505 | 275 | 100 | Minus |
| 3R | 32079331 | 3R | 10593551..10593604 | 505..452 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:56:24 has no hits.
BS33409.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:49:57 Download gff for
BS33409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RE | 1747..2547 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:20 Download gff for
BS33409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RE | 1747..2547 | 17..817 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:20 Download gff for
BS33409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10605088..10605368 | 32..312 | 100 | <- | Minus |
| 3R | 10585743..10585928 | 557..742 | 100 | <- | Minus |
| 3R | 10591409..10591459 | 506..556 | 100 | <- | Minus |
| 3R | 10593551..10593601 | 455..505 | 100 | <- | Minus |
| 3R | 10602792..10602933 | 313..454 | 100 | <- | Minus |
| 3R | 10583799..10583873 | 743..817 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:49:57 Download gff for
BS33409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6409521..6409595 | 743..817 | 100 | <- | Minus |
| arm_3R | 6411465..6411650 | 557..742 | 100 | <- | Minus |
| arm_3R | 6417131..6417181 | 506..556 | 100 | <- | Minus |
| arm_3R | 6419273..6419323 | 455..505 | 100 | <- | Minus |
| arm_3R | 6428514..6428655 | 313..454 | 100 | <- | Minus |
| arm_3R | 6430810..6431090 | 32..312 | 100 | <- | Minus |
BS33409.pep Sequence
Translation from 16 to 816
> BS33409.pep
MAQPRYDDGLHGYGMDSGAAAAAMYDPHAGHRPPGLQGLPSHHSPHMTHA
AAAAATVGMHGYHSGAGGHGTPSHVSPVGNHLMGAIPEVHKRDKDAIYEH
PLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQIRSQ
KPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKM
PIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVPSTQDFSP
LEETYASYRIKHEADF*
BS33409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-PE | 266 | CG17117-PE | 1..266 | 1..266 | 1440 | 100 | Plus |
| hth-PI | 266 | CG17117-PI | 1..245 | 1..245 | 1319 | 99.6 | Plus |
| hth-PF | 266 | CG17117-PF | 1..245 | 1..245 | 1319 | 99.6 | Plus |
| hth-PA | 472 | CG17117-PA | 1..242 | 1..242 | 1312 | 100 | Plus |
| hth-PC | 487 | CG17117-PC | 1..242 | 1..242 | 1312 | 100 | Plus |
