BS33410.complete Sequence
2552 bp assembled on 2014-07-17
GenBank Submission: KX804635
> BS33410.complete
GAAGTTATCAGTCGACATGTGGTGGTCAAGTGGTGCTCCTCTCGTGGAGC
TACTTCTGCTTGGGTCCCTGGTGATTGGTAGAGTCAGCTCCCTGATATGC
ACGCGCCGTCCAGCGAACACGGGCTCGCCCAAATCTCCGGTGGATGAGAA
CTTTATGATAAGCGTGTCGGGTAATCCGGAAACGTACATTCTCGGCCAGG
AATACAACGTCTCTCTTAATGCCTTCAATGGCCACCGCTACATTAGCTTT
ATCATGGCACTGGAAAACGAGAATGGTGACTTTAGCTACAACGATGACTT
GGGTCGCTTTGAGCTGAGCGACTTGATTGAGACCCGGTTCAGTCCGAACT
GCATCAACATGGTGGAGAACACCAATACGAACTCCAAGACGCACATGCAC
TTGACTTGGGTGGCGCCCAGTGAGCCGGGCAGTGGCTGCGTTCTGATCCG
GGCCACAGTTCAGCAGCATCGCGAGGTGTGGCACATGGATGATGGCGGTT
TAACAAAACGCATCTGCGAGGAGGTCACCGATGATGTGGAAAGTCAGCCA
ACTGCTCCGGCGGCAGTGGATGTGCCCTGCTGTGCATGCGATGAGGCGCG
CTATGAGCTTATATTTGAAGGCGTCTGGTCCAGGAACCTGCATCCCAAGG
ACTTTCCCACTCGAGGCTGGGAGACTCGATTCTGTGAGCTTCTGGGAGCC
GCCCACAGTTCGGATTATCGTTTCTGGGAGTCCGGAGAACTGGCCAGCGT
GGCTATGAAGGAATATGCGGAACATTGCAGTTCGCGTCTGCTGGAGCGAG
AGTTCAGCATTAATTTTCGGGATCAAAAGATACGGACGATAATCAAGGCA
CGGGGCCCATCGTATCCCAACATAAGCAGCAAGACAATGGCCTCGGTGCG
AGTAGATCCCATTCACCACATGGTGTCCTTTGCCTCCAAGATAGAACCCT
CTCCGGATTGGATTGTGGGCGTTACTGGACTGGAACTATGCCTGCGCAAC
TGCACATGGATGGAGGAAAAAGTGATCAACCTATATCCGTGGGATGTGGG
CACAGATTCGGGTCCCACCTATACGTCATCCGATCAGCCCCAAGTTCCGC
CAGATGTCATTAGACGCATGCGTTCCGACTTTCCCAATGATCCGCGCTCT
CCTTTCTACGACATATCCGGAACTCCCATGAAACCCATGGCCATTCTGAC
GGTGAAGCGCCAGCGAATCTACGAGAGAAGATGTGCAGATGAGGACTCCA
ACAACGATCCCGATGTGCCGCGTGAATGTTTCACCCATCCATGGTCCAGT
TGGAGCGACTGCTCTTCCAAATGCGGGGTTGGCATGCAGTATAGAAGACG
TGTCTATAAGCAACCGGAGCTCGCAAGGGTCTACAATTGCAATGAGGCGC
AGTATGAGGAGCGCGAGTGCCAGGGCGAGATGTGTGGTCAAAATAATCTC
ATGCGGGAGCCGGAGGAATTTGAGGACCTGGAGCCAGATCCAAGGAGGAT
TGGTTATCAACCGTCACAACAACGCCGTGCCGAATGCGAACTCAGTTCCT
GGGGCAGCTGGAGCCCATGTAGTGTAACCTGTGGCGATGGTTACGAGATG
CGCCAGAGGCAGTACCTTAATCCCCAAGCAGAGTTCGATTGCCAGGGTGT
ACATCGCATGGAGCTGCAGGAAACGCGAAAATGCTCTGGTCGAGATTGCC
TTGGTAGCTTACCAGGATCCTACAGCACCGACATGGATAGTCCCTATGGC
GGGGCTTCTCCAGGACGAATTGGAGGCAATATGTATGGACCGCAACTTGA
ACCCGAGGCAGAGAACTTTGGTGACTACGATGACTCACGAAATGGAGCAG
TTGGTGGATTCGAAGTGGGCAATCTTAAGGGCAACATTGGCAATTGGGCC
TTGAACAGGCAAACAAATTTGGGAAGAGATGTTCCGTCGCTTAGGCCCAC
AAACTACGATAGAGCCCGCCAGCAAGCAGAAAAATCAGAACGAACCACGT
GGTCTGGGCAGTCACGTCCCGATGATCCGCGCTTGGAGGATGTGGAACGT
GCTCCTTGGCATCGTCAAAGGCCCTCCAACAAATACGGCTCAATCGTAGA
GGCGCCCGAAATGGTTTCGCCAAGGGAACCATGGCAAAGGGCAAACAACT
TTGGCAATCCGGACATGTATACACCTGGAGGAGATGTGGACCCCTCGCTG
TCCTACCGCTGCTTCCAAATGGTTCAGACGGCTCAGCCACGCTGCCACGA
TCAAACTATTACGGGTCACTTTTGGTTCTACAACTTCTGTGCGGATGAGT
GCATGCTGTATGCCGCGGATCAGTGCGATCGGAATGTGAACAAGTTCAGG
CGGTGGGAGGATTGCGAGAAATGCCGGCAGCCAGGAATGGCTGCACTGCA
GCAGGAGCACACCAATTCGCCACAGTGCGAGGATTTCCGTGCCATTTGGC
AGGCGGAGCAGCGGGCTCGGGAGGAAAAGCGGCCATCAAACCGCAGGCGC
AACTATGGCGATTCCAGATATCGGACTAGAAATTAGAAGCTTTCTAGACC
AT
BS33410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30046-RC | 2520 | CG30046-PC | 1..2520 | 17..2536 | 12600 | 100 | Plus |
| CG30046-RB | 2520 | CG30046-PB | 1..2520 | 17..2536 | 12600 | 100 | Plus |
| CG17739-RA | 2622 | CG17739-PA | 901..1061 | 947..1107 | 205 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30046-RC | 2986 | CG30046-RC | 70..2591 | 15..2536 | 12610 | 100 | Plus |
| CG30046-RB | 2632 | CG30046-RB | 70..2591 | 15..2536 | 12610 | 100 | Plus |
| CG17739-RA | 2830 | CG17739-RA | 936..1096 | 947..1107 | 205 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12315890..12317178 | 1248..2536 | 6445 | 100 | Plus |
| 2R | 25286936 | 2R | 12314621..12315019 | 209..607 | 1995 | 100 | Plus |
| 2R | 25286936 | 2R | 12315352..12315607 | 820..1075 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 12315077..12315292 | 606..821 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 12314186..12314380 | 15..209 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 12315665..12315837 | 1075..1247 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 15:12:02 has no hits.
BS33410.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:01 Download gff for
BS33410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30046-RB | 72..2591 | 17..2536 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:29 Download gff for
BS33410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30046-RB | 72..2591 | 17..2536 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:29 Download gff for
BS33410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12315353..12315607 | 821..1075 | 100 | -> | Plus |
| 2R | 12315666..12315837 | 1076..1247 | 100 | -> | Plus |
| 2R | 12315890..12317178 | 1248..2536 | 100 | | Plus |
| 2R | 12314188..12314380 | 17..209 | 100 | -> | Plus |
| 2R | 12314622..12315019 | 210..607 | 100 | -> | Plus |
| 2R | 12315079..12315291 | 608..820 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:01 Download gff for
BS33410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8201693..8201885 | 17..209 | 100 | -> | Plus |
| arm_2R | 8202127..8202524 | 210..607 | 100 | -> | Plus |
| arm_2R | 8202584..8202796 | 608..820 | 100 | -> | Plus |
| arm_2R | 8203395..8204683 | 1248..2536 | 100 | | Plus |
| arm_2R | 8202858..8203112 | 821..1075 | 100 | -> | Plus |
| arm_2R | 8203171..8203342 | 1076..1247 | 100 | -> | Plus |
BS33410.pep Sequence
Translation from 16 to 2535
> BS33410.pep
MWWSSGAPLVELLLLGSLVIGRVSSLICTRRPANTGSPKSPVDENFMISV
SGNPETYILGQEYNVSLNAFNGHRYISFIMALENENGDFSYNDDLGRFEL
SDLIETRFSPNCINMVENTNTNSKTHMHLTWVAPSEPGSGCVLIRATVQQ
HREVWHMDDGGLTKRICEEVTDDVESQPTAPAAVDVPCCACDEARYELIF
EGVWSRNLHPKDFPTRGWETRFCELLGAAHSSDYRFWESGELASVAMKEY
AEHCSSRLLEREFSINFRDQKIRTIIKARGPSYPNISSKTMASVRVDPIH
HMVSFASKIEPSPDWIVGVTGLELCLRNCTWMEEKVINLYPWDVGTDSGP
TYTSSDQPQVPPDVIRRMRSDFPNDPRSPFYDISGTPMKPMAILTVKRQR
IYERRCADEDSNNDPDVPRECFTHPWSSWSDCSSKCGVGMQYRRRVYKQP
ELARVYNCNEAQYEERECQGEMCGQNNLMREPEEFEDLEPDPRRIGYQPS
QQRRAECELSSWGSWSPCSVTCGDGYEMRQRQYLNPQAEFDCQGVHRMEL
QETRKCSGRDCLGSLPGSYSTDMDSPYGGASPGRIGGNMYGPQLEPEAEN
FGDYDDSRNGAVGGFEVGNLKGNIGNWALNRQTNLGRDVPSLRPTNYDRA
RQQAEKSERTTWSGQSRPDDPRLEDVERAPWHRQRPSNKYGSIVEAPEMV
SPREPWQRANNFGNPDMYTPGGDVDPSLSYRCFQMVQTAQPRCHDQTITG
HFWFYNFCADECMLYAADQCDRNVNKFRRWEDCEKCRQPGMAALQQEHTN
SPQCEDFRAIWQAEQRAREEKRPSNRRRNYGDSRYRTRN*
BS33410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30046-PC | 839 | CG30046-PC | 1..839 | 1..839 | 4631 | 100 | Plus |
| CG30046-PB | 839 | CG30046-PB | 1..839 | 1..839 | 4631 | 100 | Plus |
| CG17739-PA | 873 | CG17739-PA | 11..717 | 12..789 | 1661 | 44.1 | Plus |
| CG30203-PB | 924 | CG30203-PB | 5..841 | 9..837 | 1565 | 38.9 | Plus |
| fat-spondin-PA | 763 | CG6953-PA | 8..566 | 9..561 | 881 | 34.1 | Plus |
