BS33416.complete Sequence
3047 bp assembled on 2014-03-03
GenBank Submission: KX803214
> BS33416.complete
GAAGTTATCAGTCGACATGGACTCGAGTAGTCGGCGCAGTTTTTCTGGTG
GAAGTGAAAACGAGGGTGGACGGGGCAGCGACTACTATAGATCCAGGCCG
GGGTCTCGATACAGTCGATCCAGGTCGCGTTCCCGTGAGCGCAACCGCAG
CCATGGAGGAATCAGGCACCGGAACTCTCGCTCTCGAAGTCGGGATCGGG
ATCGGTCGCCCGTGTTCAGAAACGATCAGCATCGCGGTGGTCGAGGAGGA
GCTGGTAACGGGGACCCCGACCTTTACCACAGCCTGATCAACGACGACTA
CAGGGATCAGGATGAGCGCAACTACAACTCCAGGAGCAACTTTGAGAATC
GTCAGTTCCGGCGACATGATAGCTTCGACCGTCGGCATCGGGACCGAGAT
GGCGAGAGCGATCGGGAGCTAAACGACTACGAGTACGAACAGCGCTCCCG
CGACTTGGACTCACGTGATCGTAGCTCCACGGACAGGGACTGGTATCACA
ACAGAAGTCGGAGCAGGGAACACAGCAGACCCTGGAACAGAAACAACAAT
CACGACGACAGAAGCAGAAGCAACGAGCGAAACACGCGCCACCGAGATCA
CCGCATGTACAACGGCGGTGGCAGCAACCATAATCGCGATCGAGATCGAG
ATCGGGATAGGGAGCAAGACCGTGAACGTGATCGAGATCGAGATCGGGAT
CGTGAGAGAAGGGGCTCCTCAGATTACGACAGCGATGAAGGCCACATGCG
CAGGAACAAATACCGATCCACCACTGAAGCCCTCAATATTATTATAATCT
TCGGTCTTACCAAGGAAATGACCAGAGCAGATATTATGAGCGAGCTGATA
AAGGTGAACATGGAGCCAGCGTGCATTCGCATTATCCGGAAGCAGGGAAC
AGATTCATCACGCGGTATAGCGTTTGTCGAGTTTAACACCGTTGAGGAGG
CAAAGCAATGGATGGATATTACACAGGGCGTTCTGAAGTTAAACGACGAG
CGGGTGAGCATGCGGTACAGCCACAAGCGAATTCAGGACTGGAACTGCAA
CAAGTGTGGCGTCTGCAACTTCAAGTTTAGATTCTATTGCTTTGTGTGCA
AAACATCCCGGGAAGACAGCGAAACCACCTTCTCCTCCGGTAGCGAGGGC
GTGGACGAAGTCAGCACCATCCTCACCAAAAAGATCATGCTACGCAACCT
GGACGCCCTGACCAACGAAGAGGCTGTGCTCACTGCCCTCCAACTTCACC
TAAAGGATCTGAGCAAGACCGTGAGCAAGGTGCTAATTAGTCGGGATTCC
TTGACGCAGGCATCGCGTGGAATTTGTTACCTTCACTTCGACACTCTTGT
CGACTCGATGAATGTGCACAATGCCTTGACAGCGCTGGATCCTCCACTTA
CCTTGGACGACAGAGTTGTGGCCATTACCTATTGCATCGACTTGGAGGAG
CAGCAAGCATTGCCCAAGAACCCTAAAGAATTGGCAGTTAAAGATTCAAC
TGTCAATAGCGGGAACATTTCAGCAGTTTCGCCCTCAGGATTGGGTGGAA
ACTATACTCTGGCCGATGTGCCACGACTCGCTGAATATAGTGCCTCCCTG
TACGCTTCGAATCCCGCAGAGCACGCTTATTATGTCCAGTACTATACGGA
GTACTACACGGCAGATATAAACAAAAATAACAGGGATTCCCATTTGACGG
AAGCCAATTCCGGAGCAGCGGTTGCCCTCTCGGCCATCCAGCGCAAGCAG
AAGAAGATGAGCAGTATCGAGACCACGATCACAGCGGCGGCCACAGCTGC
CGCACAGGCAGCGGCGCAAGTGAAGGCCACATTGGCTGCTCAGGTGGCCA
GTGCGCCCAAGGGCAACGATGGAAAGATATACCCCACTCCCGATGTGACG
CAGTACCAGTATGATGAGACATCCGGCTACTATTACGACAGTACCACGGG
TCTCTACTACAATGCCCACTCGCAGTACTACTATAACAACGAGACGGGCG
CGTATCTTTACTGGGATCAGCGCAGGAGCACCTATGTGCTGGCCACGCCC
GCCTCCACTCAGGCAGCTCTGCAGGAAGTCCTGGCCGACGCCGAGCAAAA
GGGGGAGGAGGAGTCCAAAAAGGCGAAGGAGAAGGAGGGTGGAAACAAGC
ACGACAAGGTTAAGGTGGCGAAGAAGATCGTCAAGGACATGGAGAAGTGG
GCCAAGCAGCTAAACCAGAAAAAGGACTACACAGCTGTGGCCACGCCACA
ACCAATATTGGCGAACGAGGTAGCCACCACTTCGCGTGGCAATCAAGGGG
GATATGCTGATGTGGGATTCTCCATTCTCGAGAAGAAGGAGAGGGGCAAG
TTAAACGACTATGCGCCAAACCCGACTGTGGGTCCAATGAACAAGCTTGT
CAATGCCTATGGCGGAACATCGGACTCTGAAGAGGACAATGCTGCGAGTT
CGCAAAACACACAGAGTTCAGCGGTTGTAAGCGGCGGAGGAGGTGCTGAA
GAGTCCGATTACGTGGACTTCCATAAACTGACATGCCTGCTCTGCAAGCG
TGCCTTCCAATCGTTGGAAATACTCCAGAAGCACTTGAAGATGTCCACTC
TGCACAAGGAGAACCTGGCCAAGCTCAATCAAAACACTAGCAGTAGCATC
GAAGAGGCACTAGCCTATCGTGATCGTGCCAAGGAGCGCAGGCTGAAGTA
CGGCGAGAGCGATCCTCCCCCACCAAATAGGAGCAGGGAGCGATTCGAGC
AGGAGATCAAGACACTGCAGTCGCGGCAAAAGCAGTCTACTAGCGCTACT
CCAGCCATGCCCATCAGTTCGAGCAACGTGGGCAGTCGACTGCTCCAAAA
GATGGGTTGGTCGGAGGGACAGGGACTGGGCAGGAAGAACCAGGGACGCA
CCCAGATCATAGAGGCGGACGGACGCTCCAATTACGTGGGCTTGGGCAAC
AAATCGGGACAGATGATACCGGGCAACGACTACAAATCCTATATAAAGAA
GATGATGAAGCAGCGCTACGAGAATGCTTGAAAGCTTTCTAGACCAT
BS33416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4887-RB | 3015 | CG4887-PB | 1..3015 | 17..3031 | 15075 | 100 | Plus |
| CG4887-RA | 3015 | CG4887-PA | 1..3015 | 17..3031 | 15075 | 100 | Plus |
| CG4896-RK | 2844 | CG4896-PK | 2317..2844 | 2510..3031 | 1190 | 82.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4887-RB | 3424 | CG4887-RB | 193..3207 | 17..3031 | 15075 | 100 | Plus |
| CG4887-RA | 3331 | CG4887-RA | 193..3207 | 17..3031 | 15075 | 100 | Plus |
| CG4896-RJ | 3956 | CG4896-RJ | 3261..3788 | 2510..3031 | 1190 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1176101..1176881 | 1884..2664 | 3905 | 100 | Plus |
| 2L | 23513712 | 2L | 1175578..1176043 | 1418..1883 | 2330 | 100 | Plus |
| 2L | 23513712 | 2L | 1173379..1173830 | 135..586 | 2260 | 100 | Plus |
| 2L | 23513712 | 2L | 1176942..1177192 | 2665..2915 | 1255 | 100 | Plus |
| 2L | 23513712 | 2L | 1173884..1174130 | 586..832 | 1235 | 100 | Plus |
| 2L | 23513712 | 2L | 1175287..1175523 | 1182..1418 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 1180997..1181489 | 1886..2363 | 960 | 81.5 | Plus |
| 2L | 23513712 | 2L | 1181855..1182105 | 2665..2915 | 820 | 88.4 | Plus |
| 2L | 23513712 | 2L | 1175045..1175173 | 1053..1181 | 645 | 100 | Plus |
| 2L | 23513712 | 2L | 1173201..1173319 | 17..135 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 1177254..1177372 | 2913..3031 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 1174907..1174987 | 974..1054 | 405 | 100 | Plus |
| 2L | 23513712 | 2L | 1174495..1174571 | 901..977 | 385 | 100 | Plus |
| 2L | 23513712 | 2L | 1174197..1174266 | 833..902 | 350 | 100 | Plus |
| 2L | 23513712 | 2L | 1180622..1180847 | 1552..1777 | 350 | 77 | Plus |
| 2L | 23513712 | 2L | 1181633..1181748 | 2510..2625 | 340 | 86.2 | Plus |
| 2L | 23513712 | 2L | 1180213..1180443 | 1182..1412 | 210 | 72.7 | Plus |
| 2L | 23513712 | 2L | 1182189..1182286 | 2934..3031 | 205 | 80.6 | Plus |
Blast to na_te.dros performed 2014-11-28 15:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porto1 | 4682 | Porto1 DOC5 4682bp | 1637..1696 | 517..576 | 118 | 74.2 | Plus |
| Rt1b | 5171 | Rt1b RT1B 5150bp | 4073..4106 | 1240..1207 | 116 | 82.4 | Minus |
BS33416.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:31 Download gff for
BS33416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4887-RA | 193..3206 | 17..3030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:28 Download gff for
BS33416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4887-RA | 193..3206 | 17..3030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:28 Download gff for
BS33416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1173201..1173319 | 17..135 | 100 | -> | Plus |
| 2L | 1173380..1173829 | 136..585 | 100 | -> | Plus |
| 2L | 1173884..1174130 | 586..832 | 100 | -> | Plus |
| 2L | 1174197..1174266 | 833..902 | 100 | -> | Plus |
| 2L | 1174497..1174570 | 903..976 | 100 | -> | Plus |
| 2L | 1174910..1174987 | 977..1054 | 100 | -> | Plus |
| 2L | 1175047..1175173 | 1055..1181 | 100 | -> | Plus |
| 2L | 1175287..1175523 | 1182..1418 | 100 | -> | Plus |
| 2L | 1175579..1176043 | 1419..1883 | 100 | -> | Plus |
| 2L | 1176101..1176881 | 1884..2664 | 100 | -> | Plus |
| 2L | 1176942..1177191 | 2665..2914 | 100 | -> | Plus |
| 2L | 1177256..1177371 | 2915..3030 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:31 Download gff for
BS33416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1173884..1174130 | 586..832 | 100 | -> | Plus |
| arm_2L | 1174197..1174266 | 833..902 | 100 | -> | Plus |
| arm_2L | 1174497..1174570 | 903..976 | 100 | -> | Plus |
| arm_2L | 1174910..1174987 | 977..1054 | 100 | -> | Plus |
| arm_2L | 1175047..1175173 | 1055..1181 | 100 | -> | Plus |
| arm_2L | 1175287..1175523 | 1182..1418 | 100 | -> | Plus |
| arm_2L | 1173201..1173319 | 17..135 | 100 | -> | Plus |
| arm_2L | 1173380..1173829 | 136..585 | 100 | -> | Plus |
| arm_2L | 1175579..1176043 | 1419..1883 | 100 | -> | Plus |
| arm_2L | 1176101..1176881 | 1884..2664 | 100 | -> | Plus |
| arm_2L | 1176942..1177191 | 2665..2914 | 100 | -> | Plus |
| arm_2L | 1177256..1177371 | 2915..3030 | 100 | | Plus |
BS33416.pep Sequence
Translation from 16 to 3030
> BS33416.pep
MDSSSRRSFSGGSENEGGRGSDYYRSRPGSRYSRSRSRSRERNRSHGGIR
HRNSRSRSRDRDRSPVFRNDQHRGGRGGAGNGDPDLYHSLINDDYRDQDE
RNYNSRSNFENRQFRRHDSFDRRHRDRDGESDRELNDYEYEQRSRDLDSR
DRSSTDRDWYHNRSRSREHSRPWNRNNNHDDRSRSNERNTRHRDHRMYNG
GGSNHNRDRDRDRDREQDRERDRDRDRDRERRGSSDYDSDEGHMRRNKYR
STTEALNIIIIFGLTKEMTRADIMSELIKVNMEPACIRIIRKQGTDSSRG
IAFVEFNTVEEAKQWMDITQGVLKLNDERVSMRYSHKRIQDWNCNKCGVC
NFKFRFYCFVCKTSREDSETTFSSGSEGVDEVSTILTKKIMLRNLDALTN
EEAVLTALQLHLKDLSKTVSKVLISRDSLTQASRGICYLHFDTLVDSMNV
HNALTALDPPLTLDDRVVAITYCIDLEEQQALPKNPKELAVKDSTVNSGN
ISAVSPSGLGGNYTLADVPRLAEYSASLYASNPAEHAYYVQYYTEYYTAD
INKNNRDSHLTEANSGAAVALSAIQRKQKKMSSIETTITAAATAAAQAAA
QVKATLAAQVASAPKGNDGKIYPTPDVTQYQYDETSGYYYDSTTGLYYNA
HSQYYYNNETGAYLYWDQRRSTYVLATPASTQAALQEVLADAEQKGEEES
KKAKEKEGGNKHDKVKVAKKIVKDMEKWAKQLNQKKDYTAVATPQPILAN
EVATTSRGNQGGYADVGFSILEKKERGKLNDYAPNPTVGPMNKLVNAYGG
TSDSEEDNAASSQNTQSSAVVSGGGGAEESDYVDFHKLTCLLCKRAFQSL
EILQKHLKMSTLHKENLAKLNQNTSSSIEEALAYRDRAKERRLKYGESDP
PPPNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGSRLLQKMGWSE
GQGLGRKNQGRTQIIEADGRSNYVGLGNKSGQMIPGNDYKSYIKKMMKQR
YENA*
BS33416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4887-PB | 1004 | CG4887-PB | 1..1004 | 1..1004 | 5240 | 100 | Plus |
| CG4887-PA | 1004 | CG4887-PA | 1..1004 | 1..1004 | 5240 | 100 | Plus |
| CG4896-PD | 949 | CG4896-PD | 1..949 | 1..1004 | 3043 | 63.2 | Plus |
| CG4896-PK | 947 | CG4896-PK | 1..947 | 1..1004 | 3026 | 63.1 | Plus |
| CG4896-PI | 265 | CG4896-PI | 1..253 | 1..297 | 490 | 44.9 | Plus |
