BS33422.complete Sequence
1757 bp assembled on 2014-03-03
GenBank Submission: KX803862
> BS33422.complete
GAAGTTATCAGTCGACATGTCATTCGATATAGCCGTGGCCGATCAGATGC
GCATTGCACTGAACTACGTCAAGTTCAAGACGAACCAGCAACGCCTGCGC
AGCAATGACAAGGTCATCGCCGACACGGTCTACGGAAAGGTGAAGGGGGT
GAAGTGGCAGTCCATCTACGGCAACAACTACTACAGCTTCGAGGGCATCC
CGTTCGCCAAGCCGCCGGTGGGCGAGCTCCGCTTCAAGGCGCCCGTGGAG
CCAGAGCACTGGTCAGATGTCAAGCGGTGCACACATGTTCGCGCCAAGCC
CTGCCAGGTCAACATCGTTCTGAAGCAGGTGCAAGGCAGCGAGGACTGTC
TGTACCTCAATGTCTACACCAGGGAGTTACATCCACACAGACCTTTGCCG
GTTCTGGTTTGGATCTATGGCGGTGGATTCCAAATGGGAGAAGCATCGCG
GGATCTGTACAGCCCGGACTACATTATGATGGAACATGTCGTACTGGTCG
TAATATCCTATCGGTTAGGAGCCCTGGGATTCCTTAGTCTTGCAGACGAA
GAACTGGATGTTCCTGGAAACGCCGGACTAAAGGATCAAGTTATGGCCTT
GCGGTGGGTCAAACGGAATTGCCAGTTCTTTGGTGGCGATCCCGATAATA
TAACCGTTTTTGGTGAGAGTGCTGGAGGTGCATCCACACATTATATGATG
CTGACGGATCAGGCCAAGGGCCTATTTCACAAGACTATTATTATGTCGGG
ATCCGCACTGGCACCCTGGGCGCAGACCCCAACCCACATAAATTGGCCCT
ATCGCCTGGCACAGGCCACTGGCTACACAGGAGATGCTAACGATCGGGAC
ATTTTTGCCCATCTCAAGAAATGTAAGGCCAGTAGCATGCTGAAGGTGGC
CGAGGATATCATCACCATGGAGGAGCGACACCAGCGGTTGACCATGTTCA
GCTTTGGACCCACCATCGAGCCCTATTTGACTCCTCATTGTGTGATTCCC
AAGTCGCCACTGGAAATGATGCGGGACTGTTGGGGCAACAGCATTCCCAT
GGTCATCGGAGGAAACTCCTTCGAAGGTCTCCTCATGTTTCCCGAAGTGA
ACAAGTGGCCGGAACTGCTTTGCCAGCTGGGTGACTGCGAGAACCTGGCC
CCTCAAGATGCCCACGTAGATGAGCAGCAAAGAAAAGCGTTTGGAAAGAA
AGTACGAGAGCTATATTTCGGCGATAGGACTCCTGGCAGGAAGACCATAT
TGGAGTACAGCGATCTCTTCTCGTACAAATATTTCTGGCATGGCATTCAT
AGGACTTTGCTCTCGCGTGCTCACCACGCCCCATTGGCCCCAACATTCCT
GTACCGATTCGATTTCGACTCGAAGCACTTCAATATCATGCGAATTATCA
CCTGTGGCCGCAAGGTGCGCGGCACCTGTCACGCGGATGATCTGTCGTAT
TTGTTCTACAATGCGGCTGCCAAAAAGCTGAAACGCCGCACAGCCGAGTT
CAAGACCATAAAGCGTTTGGTATCCATGGTCGTTCACTTTGCCATTTCCG
GGGATCCCAACATACCGATGGTCTGCCAGGATGAGAAGGAACAGCCGCGT
GGCGCGTGGCTGCCCATTTCGAAGGACGATAAGGTGTTCCAGTGCCTGAA
TATATCGCACGATGTGCATGTGATTGATTTGCCCGAAGCCGAAAAGCTGA
GACTTTGGGACTGCATCTACGACAGGGAACTCCTCTACTGAAAGCTTTCT
AGACCAT
BS33422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est8-RA | 1725 | CG1121-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
| alpha-Est9-RD | 1764 | CG1128-PD | 124..225 | 143..244 | 255 | 83.3 | Plus |
| alpha-Est9-RC | 1710 | CG1128-PC | 124..225 | 143..244 | 255 | 83.3 | Plus |
| alpha-Est9-RD | 1764 | CG1128-PD | 321..413 | 340..432 | 180 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est8-RA | 2646 | CG1121-RA | 463..2188 | 17..1742 | 8630 | 100 | Plus |
| alpha-Est9-RD | 3455 | CG1128-RD | 665..766 | 143..244 | 255 | 83.3 | Plus |
| alpha-Est9-RC | 3225 | CG1128-RC | 665..766 | 143..244 | 255 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7510525..7511414 | 1264..375 | 4450 | 100 | Minus |
| 3R | 32079331 | 3R | 7509801..7510278 | 1742..1265 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 7511911..7512223 | 376..64 | 1565 | 100 | Minus |
| 3R | 32079331 | 3R | 7497185..7497286 | 244..143 | 255 | 83.3 | Minus |
| 3R | 32079331 | 3R | 7515155..7515208 | 70..17 | 240 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 15:06:13 has no hits.
BS33422.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-03-03 17:26:28 Download gff for
BS33422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est8-RA | 463..2186 | 17..1740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:31:25 Download gff for
BS33422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est8-RA | 463..2186 | 17..1740 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:31:25 Download gff for
BS33422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7509803..7510278 | 1265..1740 | 100 | <- | Minus |
| 3R | 7510525..7511412 | 377..1264 | 100 | <- | Minus |
| 3R | 7511911..7512223 | 64..376 | 100 | <- | Minus |
| 3R | 7515162..7515208 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-03-03 17:26:28 Download gff for
BS33422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3335525..3336000 | 1265..1740 | 100 | <- | Minus |
| arm_3R | 3336247..3337134 | 377..1264 | 100 | <- | Minus |
| arm_3R | 3337633..3337945 | 64..376 | 100 | <- | Minus |
| arm_3R | 3340884..3340930 | 17..63 | 100 | | Minus |
BS33422.pep Sequence
Translation from 16 to 1740
> BS33422.pep
MSFDIAVADQMRIALNYVKFKTNQQRLRSNDKVIADTVYGKVKGVKWQSI
YGNNYYSFEGIPFAKPPVGELRFKAPVEPEHWSDVKRCTHVRAKPCQVNI
VLKQVQGSEDCLYLNVYTRELHPHRPLPVLVWIYGGGFQMGEASRDLYSP
DYIMMEHVVLVVISYRLGALGFLSLADEELDVPGNAGLKDQVMALRWVKR
NCQFFGGDPDNITVFGESAGGASTHYMMLTDQAKGLFHKTIIMSGSALAP
WAQTPTHINWPYRLAQATGYTGDANDRDIFAHLKKCKASSMLKVAEDIIT
MEERHQRLTMFSFGPTIEPYLTPHCVIPKSPLEMMRDCWGNSIPMVIGGN
SFEGLLMFPEVNKWPELLCQLGDCENLAPQDAHVDEQQRKAFGKKVRELY
FGDRTPGRKTILEYSDLFSYKYFWHGIHRTLLSRAHHAPLAPTFLYRFDF
DSKHFNIMRIITCGRKVRGTCHADDLSYLFYNAAAKKLKRRTAEFKTIKR
LVSMVVHFAISGDPNIPMVCQDEKEQPRGAWLPISKDDKVFQCLNISHDV
HVIDLPEAEKLRLWDCIYDRELLY*
BS33422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est8-PA | 574 | CG1121-PA | 1..574 | 1..574 | 3100 | 100 | Plus |
| alpha-Est9-PC | 569 | CG1128-PC | 4..568 | 5..573 | 1682 | 54.5 | Plus |
| alpha-Est9-PD | 587 | CG1128-PD | 4..586 | 5..573 | 1653 | 52.8 | Plus |
| alpha-Est2-PB | 566 | CG2505-PB | 11..566 | 11..574 | 1446 | 48.8 | Plus |
| alpha-Est2-PA | 566 | CG2505-PA | 11..566 | 11..574 | 1446 | 48.8 | Plus |
