BS33441.complete Sequence
1490 bp assembled on 2014-01-24
GenBank Submission: KX800358
> BS33441.complete
GAAGTTATCAGTCGACATGACAGCTGAAATAAATAAAGGACCCCTGCTGG
GAATGCGACACGTTCAAACCCTATTGCTTTTTTTCAACATCACGTGTTTG
TACATCGGTCGACTGAATGTGGGAGTAGCCGTGGTGGCGATGACAAACGC
CGAGTCAACTAATCCCGATTTTCCAGAATACGATTGGACTCTGACCCAGA
AGTCGTACATATTATCCAGCTTCTTTTGGGGATATATCATCACCCAGTTC
CTGGGCGGATATCTGTGCAAGCGTTATGGAGTCAAGAGTGTCATGCTCTG
GGGCTCCTTTGCATCGGGTATCTTCAGCGCTTTGACCCCGCTCTTCATCG
GATTTGGTGAATGGCAAGCCTATTGCGGTATTCGAGTCCTGATGGGATTT
GCCCAGGGCCTGATCTTTCCCTGCATCCATCAGCACTTGGCCAGATGGTC
ACCGCCGGCGGAGAGGAATCGCTTGGGTGCCCTCAGTCACACAGGAATTG
AGTGTGGCAACGTGTGTGCCATGTTCTTCAGTGGAATGATAGCCAAAAGT
GCCATTGGCTGGCCTGGAATATCGTATGTCTCTGCAGGATTAGCCTTAGC
CTGGTGTGCATTTTGGTTCGTTTTCGCTGCTGACAATGCAGAGGAATCTC
GTTACATAACCCAGGAAGAACTCCACTATATCGAATCGTCTCTGAAGCAC
AATGAGGACTATCACAAGACCGTAATTCCCGTTCCCTGGATGGCGATTTG
GACCTCGGCACCGTTTTTTGCTCTCATGGTGGCGCGTTGCTGCGAAACCT
GGGGTCTGAGCACCCTCCAGGCCCAGATCCCAACGTATATGAACGGGGTT
CTGGACATGGACATGAAAAGCAATGCATTCTTTTCGGCGTTACCATTTCT
GGCCATGTGGATTATGTCGTATGTGTATTTGATAATCGCTGATGTTCTGC
TCGCCGGAAACAGGCTGAGTTTAACGGCTCTCAGAAAGATCTTCAACTCG
TTGGCCTTCTGGATTCCTTGTGCCACTTTGATTGGAATCGGATTTCTGGA
TCAGGAACAGAAGAACCTGGCCATTGCTCTGATGACCATCAGTGTCGGTG
TCAACAGTGGAGCAACAATCGGAAGCTCCTTGAACACCATAGATCTATCC
CCGAATCATGCGAGTATTCTTATGGGTATTGTGAACACGGCTGCGAATGT
AGTGCCTATAGTAACCCCTCTGGCTGTTGGACTTATTGTTCATGAAGACA
AAAACCGTGAAGAATGGCAGATAGTGTTTATAATTGCGGCAGTAATTTTC
TTTATCGGAAACTGTGTGTTCCTGTATTATGGAACGGCTGTTTCACAGCC
CTGGGATGCTGAAGACTACCTCACAGAAAAGGTACCAGACCTAGCTATAG
CTCCAGCTATCCATGAAGCTGGTAAAGGCATTGATGGACCTTCTCAGAAG
TCGATGATATTAAAGTTCCACTAGAAGCTTTCTAGACCAT
BS33441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30265-RB | 1458 | CG30265-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| CG30265-RA | 1458 | CG30265-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| CG12490-RB | 1440 | CG12490-PB | 1..1420 | 17..1436 | 4205 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30265-RB | 1622 | CG30265-RB | 58..1516 | 17..1475 | 7295 | 100 | Plus |
| CG30265-RA | 1771 | CG30265-RA | 207..1665 | 17..1475 | 7295 | 100 | Plus |
| CG12490-RB | 1647 | CG12490-RB | 54..1473 | 17..1436 | 4205 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22833120..22834193 | 176..1249 | 5370 | 100 | Plus |
| 2R | 25286936 | 2R | 22835186..22836259 | 176..1249 | 3540 | 88.6 | Plus |
| 2R | 25286936 | 2R | 22837916..22838971 | 176..1231 | 1590 | 76.7 | Plus |
| 2R | 25286936 | 2R | 22834249..22834474 | 1250..1475 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 22832920..22833059 | 37..176 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 22836344..22836527 | 1253..1436 | 620 | 89.1 | Plus |
| 2R | 25286936 | 2R | 22841283..22842038 | 403..1158 | 255 | 68.9 | Plus |
| 2R | 25286936 | 2R | 5962283..5962368 | 924..839 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:56:49 has no hits.
BS33441.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:50:07 Download gff for
BS33441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30265-RA | 207..1664 | 17..1474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:31 Download gff for
BS33441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30265-RA | 207..1664 | 17..1474 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:31 Download gff for
BS33441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22832662..22832683 | 17..38 | 100 | -> | Plus |
| 2R | 22832922..22833058 | 39..175 | 100 | -> | Plus |
| 2R | 22833120..22834193 | 176..1249 | 100 | -> | Plus |
| 2R | 22834249..22834473 | 1250..1474 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:50:07 Download gff for
BS33441.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18720185..18720206 | 17..38 | 100 | -> | Plus |
| arm_2R | 18720445..18720581 | 39..175 | 100 | -> | Plus |
| arm_2R | 18720643..18721716 | 176..1249 | 100 | -> | Plus |
| arm_2R | 18721772..18721996 | 1250..1474 | 100 | | Plus |
BS33441.pep Sequence
Translation from 16 to 1473
> BS33441.pep
MTAEINKGPLLGMRHVQTLLLFFNITCLYIGRLNVGVAVVAMTNAESTNP
DFPEYDWTLTQKSYILSSFFWGYIITQFLGGYLCKRYGVKSVMLWGSFAS
GIFSALTPLFIGFGEWQAYCGIRVLMGFAQGLIFPCIHQHLARWSPPAER
NRLGALSHTGIECGNVCAMFFSGMIAKSAIGWPGISYVSAGLALAWCAFW
FVFAADNAEESRYITQEELHYIESSLKHNEDYHKTVIPVPWMAIWTSAPF
FALMVARCCETWGLSTLQAQIPTYMNGVLDMDMKSNAFFSALPFLAMWIM
SYVYLIIADVLLAGNRLSLTALRKIFNSLAFWIPCATLIGIGFLDQEQKN
LAIALMTISVGVNSGATIGSSLNTIDLSPNHASILMGIVNTAANVVPIVT
PLAVGLIVHEDKNREEWQIVFIIAAVIFFIGNCVFLYYGTAVSQPWDAED
YLTEKVPDLAIAPAIHEAGKGIDGPSQKSMILKFH*
BS33441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30265-PB | 485 | CG30265-PB | 1..485 | 1..485 | 2565 | 100 | Plus |
| CG30265-PA | 485 | CG30265-PA | 1..485 | 1..485 | 2565 | 100 | Plus |
| CG12490-PB | 479 | CG12490-PB | 1..473 | 1..473 | 2237 | 87.9 | Plus |
| CG9825-PA | 485 | CG9825-PA | 1..485 | 1..485 | 1994 | 75.5 | Plus |
| CG9826-PC | 495 | CG9826-PC | 1..455 | 1..455 | 1626 | 64.8 | Plus |
