BS33442.complete Sequence
878 bp assembled on 2014-01-24
GenBank Submission: KX806213
> BS33442.complete
GAAGTTATCAGTCGACATGTTTCATTTGAAGCGGGAACTGAGTCAAGGCT
GCGCCTTGGCCCTCATCTGCCTGGTGTCCCTCCAGATGCAGCAGCCCGCC
CAGGCGGAGGTGTCCTCGGCTCAAGGCACTCCCCTGAGCAATCTCTATGA
TAATCTGCTGCAGCGCGAGTACGCCGGACCCGTCGTCTTTCCCAACCACC
AGGTGGAGCGTAAGGCACAGCGCTCACCCTCTCTGCGCCTGCGATTCGGA
CGCAGTGATCCGGACATGCTGAACAGCATTGTGGAAAAGCGTTGGTTCGG
CGACGTCAACCAGAAGCCCATCAGGTCGCCATCCCTGCGTCTGCGCTTCG
GCAGGCGGGATCCCAGTCTGCCGCAGATGCGGAGGACCGCCTATGATGAC
CTCCTGGAGCGGGAGCTCACCCTCAACAGCCAGCAGCAGCAGCAGCAGTT
GGGTACCGAGCCGGACTCCGATCTGGGTGCCGACTACGACGGACTGTACG
AGCGAGTGGTGCGGAAGCCACAACGACTTCGCTGGGGACGCAGTGTTCCT
CAGTTCGAGGCAAACAACGCGGACAATGAACAAATTGAACGATCGCAATG
GTACAACTCGCTTTTGAACTCGGACAAGATGCGGCGAATGCTAGTGGCCC
TCCAGCAGCAGTACGAAATTCCGGAGAACGTGGCCAGCTATGCCAACGAT
GAGGACACTGATACGGATCTGAATAACGATACGTCGGAGTTCCAAAGGGA
AGTCCGTAAACCAATGCGCTTGCGATGGGGCAGGAGCACTGGCAAAGCTC
CGTCAGAGCAAAAGCATACTCCCGAGGAAACCTCATCCATCCCACCAAAG
ACACAGAACTAAAAGCTTTCTAGACCAT
BS33442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sNPF-RB | 846 | CG13968-PB | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sNPF-RB | 2447 | CG13968-RB | 452..1298 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20054277..20054736 | 124..583 | 2300 | 100 | Plus |
2L | 23513712 | 2L | 20054879..20055109 | 584..814 | 1155 | 100 | Plus |
2L | 23513712 | 2L | 20054113..20054222 | 17..126 | 550 | 100 | Plus |
2L | 23513712 | 2L | 20055174..20055224 | 813..863 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:56:52 has no hits.
BS33442.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:50:09 Download gff for
BS33442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sNPF-RB | 458..1295 | 23..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:33 Download gff for
BS33442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sNPF-RB | 458..1295 | 23..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:33 Download gff for
BS33442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20054119..20054221 | 23..125 | 100 | -> | Plus |
2L | 20054279..20054736 | 126..583 | 100 | -> | Plus |
2L | 20054879..20055109 | 584..814 | 100 | -> | Plus |
2L | 20055176..20055221 | 815..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:50:09 Download gff for
BS33442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20054119..20054221 | 23..125 | 100 | -> | Plus |
arm_2L | 20054279..20054736 | 126..583 | 100 | -> | Plus |
arm_2L | 20054879..20055109 | 584..814 | 100 | -> | Plus |
arm_2L | 20055176..20055221 | 815..860 | 100 | | Plus |
BS33442.pep Sequence
Translation from 16 to 861
> BS33442.pep
MFHLKRELSQGCALALICLVSLQMQQPAQAEVSSAQGTPLSNLYDNLLQR
EYAGPVVFPNHQVERKAQRSPSLRLRFGRSDPDMLNSIVEKRWFGDVNQK
PIRSPSLRLRFGRRDPSLPQMRRTAYDDLLERELTLNSQQQQQQLGTEPD
SDLGADYDGLYERVVRKPQRLRWGRSVPQFEANNADNEQIERSQWYNSLL
NSDKMRRMLVALQQQYEIPENVASYANDEDTDTDLNNDTSEFQREVRKPM
RLRWGRSTGKAPSEQKHTPEETSSIPPKTQN*
BS33442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sNPF-PB | 281 | CG13968-PB | 1..281 | 1..281 | 1465 | 100 | Plus |