BS33456.complete Sequence
1973 bp assembled on 2015-01-08
GenBank Submission: KX803428
> BS33456.complete
GAAGTTATCAGTCGACATGTCACTAGACGGTGGCCAGAATCTTAACTTGG
ATGCGGCGGCCATTGGCCCAGATCCATGTGGATCCGTTCCAGCAACACCT
GGCATTGGATTATGGAGTGGCATGGTGACCATTCTTGTGCAAACGCTTCT
ATCGTCCCAGTGTCTAGTTTCGCCCGCCAGCCAGTGGCCAGTGGACTATG
TTGGCGATTTGAGTCAACCCTACGATTTTGTGGTCATTGGAGCAGGATCT
GCGGGATCCGTGGTGGCCAGCCGGCTGAGCGAGAATCCCGACTGGAGAGT
GCTCGTCCTGGAGGCGGGCGGTGATCCACCCGTCGAATCTGAGTTGCCGG
CACTATTCTTTGGACTGCAGCACACGAACTTCACGTGGAATTACTTCACA
GAGCCCAGTGATGAGGCCTGTCAGGCAATGAAAGATGGTCGCTGCTATTG
GCCACGAGGCAAAATGCTGGGAGGATCGGGAGGAGTGAATGCCATGCTAT
ATGTTCGTGGCAATCGCAGGGACTTCGATGGCTGGGCGGCAATGGGAAGC
ACGGGCTGGAGCTATGATCAAGTGATGCCGTTCTTCGAAAAGTCGGTCAC
GCCTCAAGGTAATGCCACCCATCCTAAGGGTTATGTAACCCTAAAACCGT
TCGAGCGAAAAGATAATGACATACATCAAATGATCATCGATGGAGGTCGG
GAGTTGGGACAGCCATATGTGGAGAGATTCCAAGAGGGCAGTGATACGGG
CTATTCCCATGTGCCGGGTACCGTGAGACAAGGTCAAAGGATGAGCACAG
GCAAAGGATATTTGGGTGCAGTCTCCAAGTCTCGTCCCAATCTTCATGTG
GTCAAGAATGCACTGGTCACCAAATTGGATCTCGATGGCGAAACGGTGAA
AGAAGTTAAATTCGAAAGGGCTGGTGTTACCCATCGAGTGAAAGTGACCA
AGGATGTGGTGATCTCGGCCGGCGCCATCGATTCACCAGCACTTCTCCTG
CGTTCCGGCATTGGGCCCAGTAAACATTTGAAGGAGTTGGGCATACCCGT
AAAACTAGATCTTCCAGGAGTTGGACGCAATCTCCAGGATCATGTCCTTG
TGCCCGTCTTTTTGAGACTGGATGAGGGTCAAGGCGAGCCAATGACGGAT
CAGGCTGCCCTGGATAGCATATATCAGTACCTAATCTATCGCGCCGGACC
TCTGGCTGCTCACAGCACCGCCTCCTTGGTGGGGTTTATAAACACAAATG
CGAGTAGCGATGGTGCTTATCCGGATACCGAGAACCATCATATGTTCTTT
CAGAGAGCCCATCACGCTTCGCTAGAACTTTTTACCAAGGGTCTATCCAT
TCAAGACCAATATACAGAAGTATTGCAAGAATATCTTAAGGACTCCCATT
TGCTGTGCGTTTTTGTTCTACTCTCACATCCTGCGGCCAGAGGTGAATTG
CGTCTAAAGAGTACAGATCCCAAGGTGCCGCCGATCCTAACCAGTAATTA
TCTAACGGAATCGGAGGATGTGGCCACCTTGATGAGGGGCATACGCTACA
TCGAGTCCCTCGAACAGACGAAAGCTTTTCAGGATCATCTGGCCGAGATC
GCTAGGATTCCGATTAAAGAGTGCGATCAAATAGAGAACTACCGCAGTGA
GGAGTACTGGCGATGCTATGCCAAATACTTCACCGTCACCTGTTACCATC
AATCGGGCACCGTGAAAATGGGCCCCGACTACGATAACGAGGCCTGTGTG
AGTCAGCGTTTGAAGGTCCATGGATTGGAGAACCTTAGAGTGGCGGATGC
CAGCATAATGCCAGCGGTGGTCAGTGCCAATACAAATGCGGCCACGGTGA
TGATTGGTGAGAGGGCGGCCCACTTCATCCAGGAGGATTACCAGGGTGAG
GCAGTTGGCGCCAATGGAGGTCTATGGGTGCCGCATATGCATGCGGATGA
ATTCTAGAAGCTTTCTAGACCAT
BS33456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-01-08 14:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9509-RB | 1941 | CG9509-PB | 1..1941 | 17..1957 | 9705 | 100 | Plus |
| CG9509-RA | 1941 | CG9509-PA | 1..1941 | 17..1957 | 9705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-08 14:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9509-RB | 2980 | CG9509-RB | 703..2643 | 17..1957 | 9705 | 100 | Plus |
| CG9509-RA | 2342 | CG9509-RA | 65..2005 | 17..1957 | 9705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-08 14:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14906671..14908286 | 1957..342 | 8080 | 100 | Minus |
| X | 23542271 | X | 14908680..14909006 | 343..17 | 1635 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-08 14:32:10 has no hits.
BS33456.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-08 14:32:32 Download gff for
BS33456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9509-RA | 65..2005 | 17..1957 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-08 14:32:32 Download gff for
BS33456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14908680..14909006 | 17..343 | 100 | | Minus |
| X | 14906671..14908284 | 344..1957 | 100 | <- | Minus |
BS33456.pep Sequence
Translation from 16 to 1956
> BS33456.pep
MSLDGGQNLNLDAAAIGPDPCGSVPATPGIGLWSGMVTILVQTLLSSQCL
VSPASQWPVDYVGDLSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLEA
GGDPPVESELPALFFGLQHTNFTWNYFTEPSDEACQAMKDGRCYWPRGKM
LGGSGGVNAMLYVRGNRRDFDGWAAMGSTGWSYDQVMPFFEKSVTPQGNA
THPKGYVTLKPFERKDNDIHQMIIDGGRELGQPYVERFQEGSDTGYSHVP
GTVRQGQRMSTGKGYLGAVSKSRPNLHVVKNALVTKLDLDGETVKEVKFE
RAGVTHRVKVTKDVVISAGAIDSPALLLRSGIGPSKHLKELGIPVKLDLP
GVGRNLQDHVLVPVFLRLDEGQGEPMTDQAALDSIYQYLIYRAGPLAAHS
TASLVGFINTNASSDGAYPDTENHHMFFQRAHHASLELFTKGLSIQDQYT
EVLQEYLKDSHLLCVFVLLSHPAARGELRLKSTDPKVPPILTSNYLTESE
DVATLMRGIRYIESLEQTKAFQDHLAEIARIPIKECDQIENYRSEEYWRC
YAKYFTVTCYHQSGTVKMGPDYDNEACVSQRLKVHGLENLRVADASIMPA
VVSANTNAATVMIGERAAHFIQEDYQGEAVGANGGLWVPHMHADEF*
BS33456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-01-08 14:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9509-PB | 646 | CG9509-PB | 1..646 | 1..646 | 3414 | 100 | Plus |
| CG9509-PA | 646 | CG9509-PA | 1..646 | 1..646 | 3414 | 100 | Plus |
| CG9512-PB | 623 | CG9512-PB | 19..617 | 36..627 | 1144 | 39.2 | Plus |
| CG9512-PA | 623 | CG9512-PA | 19..617 | 36..627 | 1144 | 39.2 | Plus |
| CG12398-PA | 633 | CG12398-PA | 49..625 | 61..626 | 968 | 37.6 | Plus |
