BS33467.complete Sequence
1085 bp assembled on 2014-01-24
GenBank Submission: KX800152
> BS33467.complete
GAAGTTATCAGTCGACATGAGGCTGTTTGCGGCAGCAACAGTTGCGCTTG
TATTGCTTCTGGGCCAAGCAGCTGGCGAGGAGCTTGCGGAGGAGCGAGCG
GGACAGGCACAGGGCGATGCGGAGAGCACGGAATCTTCAGAAACAACAAC
GGACCAGGCGGTGAGTGAGCCCCCGATCACGCTGGTCCACGTTCTGAATC
CCGGCGAGCGGGAGTATTTGTCACCCAACCTGATTGGTGTCCAGAACATT
GCGATGACCTTCCTGCCACTGTCGATGAACTTTGTGAATATCATCGACGC
CTTTCGGGAAATCACCGCCGGAGTGCGCTATGAGATCCTGCTAAACGCGC
TAGACACAAAGGCAATACAGCCGGCGGAAGCGGACATAGTCTGCCGCCTG
GTCATCCTGGAAAAGCCTTGGCTGCGCACCCAGTGGGGCGACAAGCACCG
CGAACTGGTTACCTCCAATTGCACCGACCCAGCGGTGAACTCGGTGGCCG
GAGATCCGGCAGAGAAGGCGCGACTGCTTAACGAGAAATATGTGAGTAAT
AGCATCTTTAATGGCGGTCAGAGGAAAGAACTGAGCGACGCAGAGATGGC
CAATCTGGAGTCACAGATACTCACTAACCTGGGACCTATGAGGCGGAAGG
TCAGTCTGACCAAAACCGCTTCAGCGGCTCCTGTTCGTGCACCTTCTCCT
GCTGCTCCTTCTCCTGCCGAGGCTGCCCCTCTGGATTCGGCAGCTCCTGC
TGTATTAACCGCATCTATAGCAGTCACCAAGCTTAGTCCACCTGACGCCA
CTAATGAGACGGCCACGGCAATTAGCATTGATAATGTGGAAGAAAAGGCA
GAAGAGGTGGAGGACAAGCACGAAGAGGAGGTCGTAGCCACCACCACAAT
CGCCACGGAGCTGAACGAAAATGAGAAGCGTTGGCTCGACGATTTCCTAT
CGGTGGGTGCGTATGACTTCGAGAAGAGTCAGGAGAAGGGGCAGCAACAG
GAGGAGGCCGGCCGGGAGCAGAAGGATCCCGAGGTGGAGGCTACTACCAT
ACCGACAGCATTATCATGAAAGCTTTCTAGACCAT
BS33467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-RC | 1053 | CG12163-PC | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| CG12163-RA | 1845 | CG12163-PA | 1..527 | 17..543 | 2635 | 100 | Plus |
| CG12163-RB | 1428 | CG12163-PB | 1..108 | 17..124 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-RC | 1425 | CG12163-RC | 213..1268 | 15..1070 | 5280 | 100 | Plus |
| CG12163-RA | 2299 | CG12163-RA | 213..741 | 15..543 | 2645 | 100 | Plus |
| CG12163-RB | 1882 | CG12163-RB | 213..322 | 15..124 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5243309..5244256 | 1070..123 | 4740 | 100 | Minus |
| 3R | 32079331 | 3R | 5251424..5251533 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:56:59 has no hits.
BS33467.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-24 09:50:12 Download gff for
BS33467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RC | 215..1266 | 17..1068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:27:35 Download gff for
BS33467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RC | 215..1266 | 17..1068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:27:35 Download gff for
BS33467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5251424..5251531 | 17..124 | 100 | | Minus |
| 3R | 5243311..5244254 | 125..1068 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-24 09:50:12 Download gff for
BS33467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1077146..1077253 | 17..124 | 100 | | Minus |
| arm_3R | 1069033..1069976 | 125..1068 | 100 | <- | Minus |
BS33467.pep Sequence
Translation from 16 to 1068
> BS33467.pep
MRLFAAATVALVLLLGQAAGEELAEERAGQAQGDAESTESSETTTDQAVS
EPPITLVHVLNPGEREYLSPNLIGVQNIAMTFLPLSMNFVNIIDAFREIT
AGVRYEILLNALDTKAIQPAEADIVCRLVILEKPWLRTQWGDKHRELVTS
NCTDPAVNSVAGDPAEKARLLNEKYVSNSIFNGGQRKELSDAEMANLESQ
ILTNLGPMRRKVSLTKTASAAPVRAPSPAAPSPAEAAPLDSAAPAVLTAS
IAVTKLSPPDATNETATAISIDNVEEKAEEVEDKHEEEVVATTTIATELN
ENEKRWLDDFLSVGAYDFEKSQEKGQQQEEAGREQKDPEVEATTIPTALS
*
BS33467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-PC | 350 | CG12163-PC | 1..350 | 1..350 | 1746 | 100 | Plus |
| CG12163-PA | 614 | CG12163-PA | 1..179 | 1..179 | 888 | 98.9 | Plus |
| CG12163-PB | 475 | CG12163-PB | 1..138 | 1..157 | 184 | 37.6 | Plus |
