BS33468.complete Sequence
1634 bp assembled on 2014-07-17
GenBank Submission: KX803619
> BS33468.complete
GAAGTTATCAGTCGACATGATCAAGAGCTCCCTTAAACGCTTAAAAACGG
CGCCGACCACAACAATGCCTTATCAGCCAGCCAACAGCGGCGGGACGTCT
GGTGGCAGCAAGGCGGCAGCCAAGATGGCCCAGCTAAAGTTCTGGAACAA
GCAGAACAGCAGCAAGCAGCAGCAGCAGGACAAGGACAAGGACGCCGCCG
ACGGGGGCAACAACACCAGTGGCGGCGGCACTGGCAGCAACAGCAACGGG
GATGCCAAAAGCGAGGCCAAGAACGGCAAGCGCAACTGGCTGCACACGCC
GGAGCAGCTCATCAGCGGACACGCGGTCTATCTAGTCAAGTTCTTTGGTA
ACCTGAGCGTGGATCAGCCCAAAGGGATTGAGGTGGTCAAGGAGGCCATT
CGGAAGCTGCAGTTTGCCCAGCAGATGAAGAAGGCGGAAACGGGCACCCA
GGAGAAGTTCAAGAAGCTTGAGATCACCATTAGCATCAAGGGCGTGGCAA
TCCAGGAGCCGCGCACCCACAAGATCCTCCACCAGTTTCCGCTGTACAAC
ATTTCGTATTGTGCGGACGAGAAGGGTGTGAAGAAGTTCTTCAGCTTCAT
TGCCAAGACGGTGAAGACGCAGGACGGCAGCGATCCGACGTCAAATGGCC
ATGCAAACGGAAATGGCGATGGTAGTGCCAAAGTCGAGGAGAGCCACGAG
TGCTTTGTCTTCATTTCAAACAAATTGGCCTCGGATATCACGCTGACCAT
TGGCCAGGCCTTCGATTTGGCCTACAGAAAGTACATGGATAGCACCGAAA
AGACGAATCTGAGCAAGGCGCAGCAACAGATTAATCATCTGCAACAAACC
GTAAACGTTTACAAGGAGCGACTGCGAGAAGTTTCCGCCAAATTGCCAAA
GGCCGAGCTAGATGCCCTGCTCTTCAATCTGGGAATCAAGGATATCCTGG
AAGCGCCCACCACAGAACCCCAGAATGGAATCGAGGTGGCCAGCGAAGCC
CTGAGCAACGGCAAGCTGGATGATGATAAGCTGCTAATCGACACCAATTC
CACCACAGCGTCGACCCACTCAGCGTCGCCCAGCTCGTTCTTGCCGATTG
TCCCGCCGAGGAACAATTTATCCAGCCAGATCAGCATCGGCGGCAAGAGC
AATAGCCAAAAGATGGACGAGCTGCTGCTGAACTCGGATTCCGATAGTGA
TTTCGATCCGCGAGCGGATGAGACGCAGGAGATCGGCGGCACTGGTCGCA
GTGCGATAAGCAATATGTTCGGCTTCGAGCCGGCCAATAGCTTTGGTCAG
CATTTGTTTTCCAACAACAATGATCACAAGCTGCAAAATAATAACAGCAG
CTTACTGATAACGAGCAATAACAACAGCATTAACAGCAGTGGCTTCTCCA
GCGAGCTGAACATAACGCCGCCATTGTTGGCCCCACCGCCAAAGATTGCC
GCTCCCAGGCGCCTAAACTCGGTGACAACGGGCAACGGCCTGAATGGCAA
CACAGATCTATTCGGTTCGGATCCTTTCGAATTGAACAATGGACCGAACA
TTTTCAAGCAAAATCAGCTTAACCTTGACGACTTCTCGCTGGAGAGTTTG
GATCCCCTGCGAAAGTAGAAGCTTTCTAGACCAT
BS33468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ced-6-RD | 1602 | CG11804-PD | 1..1602 | 17..1618 | 8010 | 100 | Plus |
| ced-6-RA | 1554 | CG11804-PA | 1..1554 | 65..1618 | 7770 | 100 | Plus |
| ced-6-RC | 1554 | CG11804-PC | 1..1554 | 65..1618 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ced-6-RD | 2462 | CG11804-RD | 255..1857 | 17..1619 | 8015 | 100 | Plus |
| ced-6-RC | 2257 | CG11804-RC | 59..1652 | 26..1619 | 7970 | 100 | Plus |
| ced-6-RA | 2382 | CG11804-RA | 185..1777 | 27..1619 | 7965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9436362..9436800 | 777..339 | 2195 | 100 | Minus |
| 2R | 25286936 | 2R | 9435586..9435994 | 1427..1019 | 2045 | 100 | Minus |
| 2R | 25286936 | 2R | 9437420..9437734 | 340..26 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 9436051..9436296 | 1019..774 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 9435394..9435524 | 1558..1428 | 655 | 100 | Minus |
| 2R | 25286936 | 2R | 9435274..9435337 | 1619..1556 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 15:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6893 | 146..247 | 184 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6905 | 142..322 | 174 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2427 | 164..286 | 158 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1598 | 138..262 | 145 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1024..1148 | 164..286 | 116 | 57.1 | Plus |
BS33468.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-17 10:54:05 Download gff for
BS33468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ced-6-RD | 255..1856 | 17..1618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:33:35 Download gff for
BS33468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ced-6-RD | 255..1856 | 17..1618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:33:35 Download gff for
BS33468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9435275..9435334 | 1559..1618 | 100 | <- | Minus |
| 2R | 9435394..9435524 | 1428..1558 | 100 | <- | Minus |
| 2R | 9435586..9435993 | 1020..1427 | 100 | <- | Minus |
| 2R | 9436051..9436292 | 778..1019 | 100 | <- | Minus |
| 2R | 9436362..9436798 | 341..777 | 100 | <- | Minus |
| 2R | 9437420..9437736 | 21..340 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-17 10:54:05 Download gff for
BS33468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5322780..5322839 | 1559..1618 | 100 | <- | Minus |
| arm_2R | 5322899..5323029 | 1428..1558 | 100 | <- | Minus |
| arm_2R | 5323091..5323498 | 1020..1427 | 100 | <- | Minus |
| arm_2R | 5323556..5323797 | 778..1019 | 100 | <- | Minus |
| arm_2R | 5323867..5324303 | 341..777 | 100 | <- | Minus |
| arm_2R | 5324925..5325241 | 21..340 | 99 | | Minus |
BS33468.pep Sequence
Translation from 16 to 1617
> BS33468.pep
MIKSSLKRLKTAPTTTMPYQPANSGGTSGGSKAAAKMAQLKFWNKQNSSK
QQQQDKDKDAADGGNNTSGGGTGSNSNGDAKSEAKNGKRNWLHTPEQLIS
GHAVYLVKFFGNLSVDQPKGIEVVKEAIRKLQFAQQMKKAETGTQEKFKK
LEITISIKGVAIQEPRTHKILHQFPLYNISYCADEKGVKKFFSFIAKTVK
TQDGSDPTSNGHANGNGDGSAKVEESHECFVFISNKLASDITLTIGQAFD
LAYRKYMDSTEKTNLSKAQQQINHLQQTVNVYKERLREVSAKLPKAELDA
LLFNLGIKDILEAPTTEPQNGIEVASEALSNGKLDDDKLLIDTNSTTAST
HSASPSSFLPIVPPRNNLSSQISIGGKSNSQKMDELLLNSDSDSDFDPRA
DETQEIGGTGRSAISNMFGFEPANSFGQHLFSNNNDHKLQNNNSSLLITS
NNNSINSSGFSSELNITPPLLAPPPKIAAPRRLNSVTTGNGLNGNTDLFG
SDPFELNNGPNIFKQNQLNLDDFSLESLDPLRK*
BS33468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ced-6-PD | 533 | CG11804-PD | 1..533 | 1..533 | 2737 | 100 | Plus |
| ced-6-PA | 517 | CG11804-PA | 1..517 | 17..533 | 2661 | 100 | Plus |
| ced-6-PC | 517 | CG11804-PC | 1..517 | 17..533 | 2661 | 100 | Plus |
| ced-6-PB | 517 | CG11804-PB | 1..517 | 17..533 | 2661 | 100 | Plus |
| ced-6-PF | 514 | CG11804-PF | 1..514 | 17..533 | 2631 | 99.4 | Plus |
