BS33548.complete Sequence
827 bp assembled on 2015-03-10
GenBank Submission: KX803612
> BS33548.complete
GAAGTTATCAGTCGACATGGCGTTCACCAAGGTTCTCCAATTGATTCTCC
TAGCTGTGGTTGCCATTTCCTCTGCCGTCGACTATTGTGCTCTCCCCACC
TGTCTGGACAAGCATGTGGCCTGTAACAACAAGGGAAACTTCAGTGAAAA
TTGTCCCAAAGACGTGCGTGAGGTGAAGATCGAGCCGCATCACAAACTCA
TCCTCAATCTCTTCAACGAGTTGCGCAACAACGTGGCTGGAGGCAAAATA
GAAGGACTACCCAAGGCTGTTCGCATGGCCAAGATGTCCTGGTGCGAGGA
GCTCTCCCATCTGGCCTTGCTGAACGTAAAGACCTGTGAGTCCCTGCCAG
ATAAATGTCGCAGCACCGAGAGATTCGCCTACGCCGGCCAGAACAACGCC
TTGTTCCAGTACAGCGGAGCCGAGACAGAGTACACCGATGCGGAAATAAT
AAAGGAGGAGATCGAGAACTGGTTTGCTGAGCGCTCGAATGCATCTCCCG
AGATCCTCGCCAGCTTCCCGGAGGAGCTTCCCAACAAAGCGGTGACCAAG
TTCACCATCGCGGTGGCCGAGAAGAACACCCATGTGGGATGTGCCGCGGT
GCGCTTCTCCCGGGACTTTTACAACCACTTCGTACTCACCTGCAACTTCG
CCACATCGAACATTGTGGGTCAGCCTGTCTACACTCCGGGAGAGAAGGCA
ACCACCGGCTGCAAGAACCGATATGGAGCTGCCTACGATTACCCCAATCT
GTGCTACGCCAAGGAGATCTACGACAACGAGAAGGTCATCGAGAACACAC
AGACGATGTAAAAGCTTTCTAGACCAT
BS33548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-03-10 14:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-A-RA | 795 | CG5207-PA | 1..795 | 17..811 | 3855 | 99 | Plus |
| scpr-B-RA | 789 | CG17210-PA | 58..788 | 80..810 | 3430 | 97.9 | Plus |
| scpr-C-RB | 789 | CG5106-PB | 58..788 | 80..810 | 3385 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-A-RA | 873 | CG5207-RA | 13..815 | 16..818 | 3880 | 98.9 | Plus |
| scpr-B-RA | 898 | CG17210-RA | 70..800 | 80..810 | 3430 | 97.9 | Plus |
| scpr-C-RB | 1109 | CG5106-RB | 74..804 | 80..810 | 3385 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-03-10 14:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11241381..11242062 | 137..818 | 3275 | 98.7 | Plus |
| 3R | 32079331 | 3R | 11240139..11240809 | 810..140 | 3250 | 99 | Minus |
| 3R | 32079331 | 3R | 11225706..11226376 | 140..810 | 3205 | 98.5 | Plus |
| 3R | 32079331 | 3R | 11241195..11241315 | 16..136 | 605 | 100 | Plus |
Blast to na_te.dros performed 2015-03-10 14:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 1566..1617 | 774..827 | 112 | 70.4 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 1459..1510 | 774..827 | 112 | 70.4 | Plus |
BS33548.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:11:14 Download gff for
BS33548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scpr-A-RA | 14..806 | 17..809 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-03-10 14:11:14 Download gff for
BS33548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11241196..11241315 | 17..136 | 100 | -> | Plus |
| 3R | 11241381..11242053 | 137..809 | 98 | | Plus |
BS33548.pep Sequence
Translation from 16 to 810
> BS33548.pep
MAFTKVLQLILLAVVAISSAVDYCALPTCLDKHVACNNKGNFSENCPKDV
REVKIEPHHKLILNLFNELRNNVAGGKIEGLPKAVRMAKMSWCEELSHLA
LLNVKTCESLPDKCRSTERFAYAGQNNALFQYSGAETEYTDAEIIKEEIE
NWFAERSNASPEILASFPEELPNKAVTKFTIAVAEKNTHVGCAAVRFSRD
FYNHFVLTCNFATSNIVGQPVYTPGEKATTGCKNRYGAAYDYPNLCYAKE
IYDNEKVIENTQTM*
BS33548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-03-10 14:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scpr-A-PA | 264 | CG5207-PA | 1..264 | 1..264 | 1398 | 100 | Plus |
| scpr-B-PA | 262 | CG17210-PA | 7..262 | 9..264 | 1324 | 95.7 | Plus |
| scpr-C-PB | 262 | CG5106-PB | 7..262 | 9..264 | 1321 | 95.3 | Plus |
| scpr-C-PA | 262 | CG5106-PA | 7..262 | 9..264 | 1321 | 95.3 | Plus |
| Ag5r2-PA | 254 | CG9540-PA | 5..250 | 7..253 | 414 | 34.8 | Plus |
