BS33549.complete Sequence
782 bp assembled on 2015-03-10
GenBank Submission: KX806108
> BS33549.complete
GAAGTTATCAGTCGACATGTCCTCACGCTACGGTCGAGCTCTAACCATAT
TCTCGCCGGATGGCCACCTGTTGCAGGTGGAGTACGCCCAGGAAGCTGTT
CGAAAGGGCTCCACAGCGGTTGGCGTTCGTGGAGCCAATTGTGTGGTGCT
GGGTGTGGAGAAGAGCTCGGTGTCCGAGATGCAGGAGGATCGGACGGTGC
GCAAGATCAGCATGCTCGATCGCCACGTGGCGTTGGCATTTGCCGGTCTC
ACGGCCGATGCACGGATCCTTATAAATCGAGGGCAGGTCGAGTGCCAGAG
CCATCGACTCAACTTCGAAAACCAGGTGACCCTCGAGTACATCACCAGAT
ACCTTGCCCAGCTCAAGCAGAAGTACACGCAGTGCAATGGACGTCGTCCT
TTCGGTATATCGTGTCTAATAGGAGGCATTGACGCCGATGGCTCTGCACG
TCTCTTTCATACCGAACCATCCGGGATATTCCACGAGTACAAGGCGACCG
CCACTGGGCGTTGGGCAAATACTGTGAGGGAGTTTTTTGAGAAGGCCTAT
AGCGATCATGAAGTGACAACCAAATGTGATGCCATCAAACTAGCCATGCG
TGCCCTTCTCGAAGTAACCCAGATGAGCCAGATGCGCCTGGAGGTGGCCG
TATTGGAGAATGGCAAGCCAATGAAAATGCTGGACAGTGTAGTAATTTCG
GAAATAGTCAAGATCGTTCAGAACGAAAAGGAGCTCCAAGCGAAGGCACA
TAAAATGAAGAGATGAAAGCTTTCTAGACCAT
BS33549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-03-10 14:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4T1-RA | 750 | CG17268-PA | 1..750 | 17..766 | 3735 | 99.9 | Plus |
| Prosalpha4-RA | 750 | CG3422-PA | 1..670 | 17..686 | 1160 | 78.2 | Plus |
| Prosalpha4T2-RB | 759 | CG4569-PB | 28..472 | 44..488 | 410 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4T1-RA | 891 | CG17268-RA | 57..807 | 17..767 | 3740 | 99.9 | Plus |
| Prosalpha4-RA | 1176 | CG3422-RA | 149..818 | 17..686 | 1160 | 78.2 | Plus |
| Prosalpha4T2-RB | 1254 | CG4569-RB | 118..562 | 44..488 | 410 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-03-10 14:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20748268..20749018 | 767..17 | 3740 | 99.9 | Minus |
| X | 23542271 | X | 16276596..16276826 | 118..348 | 465 | 80.1 | Plus |
| X | 23542271 | X | 16276890..16277229 | 347..686 | 440 | 75.3 | Plus |
| X | 23542271 | X | 16276418..16276521 | 17..120 | 280 | 84.6 | Plus |
| 2R | 25286936 | 2R | 24501794..24501985 | 346..155 | 255 | 75.5 | Minus |
Blast to na_te.dros performed on 2015-03-10 14:08:22 has no hits.
BS33549.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:11:26 Download gff for
BS33549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4T1-RA | 57..805 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-03-10 14:11:26 Download gff for
BS33549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20748270..20749018 | 17..765 | 99 | | Minus |
BS33549.pep Sequence
Translation from 16 to 765
> BS33549.pep
MSSRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKS
SVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNF
ENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDADGSARLFHTE
PSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLEV
TQMSQMRLEVAVLENGKPMKMLDSVVISEIVKIVQNEKELQAKAHKMKR*
BS33549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-03-10 14:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4T1-PA | 249 | CG17268-PA | 1..249 | 1..249 | 1261 | 100 | Plus |
| Prosalpha4-PA | 249 | CG3422-PA | 1..249 | 1..249 | 958 | 75.1 | Plus |
| Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..249 | 726 | 56.3 | Plus |
| Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..249 | 726 | 56.3 | Plus |
| Prosalpha2-PA | 234 | CG5266-PA | 3..197 | 2..199 | 321 | 35.9 | Plus |
