BS33582.complete Sequence
1490 bp assembled on 2015-04-29
GenBank Submission: KX804256
> BS33582.complete
GAAGTTATCAGTCGACATGTCACGCGAGGAGCGCAAACCCATCGTTAGCT
CGTCGAGCAGCAGCACCTGCAGCAGCAGCGATGACGAAGTGCATCCTGTG
GTGCGGCGACGCAGCACTCGGGACACAGAGCTAGCCGGTCACCAGAAGGA
TGCCGGATGCTGTGATCCGACGAGCACGCCACATCGCTTCCTCGCCCTGC
TCTTTATGTGCCTCTTGGGTTTTGGTTCCTATTTTTGCTACGATAATCCC
GGCGCACTGCAGGACGTTTTCCAAAAGGAACTGCAACTCAGCTCCACCGA
GTTCACGCTGATTTACTCCATCTACTCGTGGCCAAATATTGTGCTCTGCT
TTGTGGGCGGCTTCCTCATCGACCGGGTGTTTGGCATCCGCCTGGGCACC
ATTATCTACATGCTGATCGTGCTCGTTGGCCAGTTGATCTTCGCCACCGG
CGGAGTCCTGGGCCACTTTTGGTTGATGATCGTGGGACGCTTTGTTTTCG
GCATCGGGGCTGAGTCGCTGGCTGTGGCCCAAAACAGCTATGCGGTGCTA
TGGTTCAAGGGCAAGGAGATTAACATGGTCTTTGGACTGCAGTTGTCGGT
AGCCCGTTTCGGCAGCACCGTCAACTTTTGGATTATGCAACCACTATATG
GATACGTTTCGAAATCCTATTCCGGCTACAAGGGTCTGGGCGTGGCCCTG
TTCCTGGCCTCCTCAACGTGCGTCATGTCCCTGGTTTGCACCTTGATTCT
AGGTTGGATGGACAAGCGCGCGGAGAGAATCCTTAAGCGAAATAACAATC
CTGGTGGAGAATTGGCCAAACTAAGCGATATAGTCACCTTCAAGCTGGAC
TTCTGGATGGTGTCCGTGGTATGTGTGGCCTACTACGTTGCCATCTTTCC
TTTCGTGGCTCTTGGCCAGGCCTTCTTCGTCAGCAATTTCCACATGACGC
CGGATGAGGCGAACACAGTAAACTCGATTGTCTACCTGATCTCTGCTATA
GCATCGCCACTGTTTGGATTTGTGATTGACAAGGTCGGAAGGAATGTGAC
CTGGGTGTTCTGTGCCACCATCTCCACGCTGCTAGCTCACTTCCTGCTGA
CCTTCACCCATTTGGATCCGTACATCGGGATGAGCATAATGGGACTGTCC
TATTCCATGTTGGCAGCCAGTCTGTGGCCCCTGGTTTCATTGATTGTGCC
CGAATATCAACTGGGCACTGCATATGGCTTCTGTCAGTCTGTGCAGAATC
TGGGACTAGCGGTGGTGACCATTGCAGCGGGCATCATTGTGGACAGCAGC
GGCGGCAGTCACTTCTGGCTGCAGGTATTCTTCATGTCCTTCCTGCTGGT
CTCCCTGCTGGCCACCTGTGCGATTTGGGCCTACAACCGCAAGCACCAGG
GCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATG
TACGTGAATATTGAGTCGAGTTGAAAGCTTTCTAGACCAT
BS33582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-04-29 20:18:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12194-RC | 1458 | CG12194-PC | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| CG12194-RA | 1458 | CG12194-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
| CG12194-RB | 1491 | CG12194-PB | 1..1433 | 17..1449 | 7165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-29 20:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12194-RC | 2295 | CG12194-RC | 381..1838 | 17..1474 | 7290 | 100 | Plus |
| CG12194-RA | 2257 | CG12194-RA | 343..1800 | 17..1474 | 7290 | 100 | Plus |
| CG12194-RB | 2105 | CG12194-RB | 343..1775 | 17..1449 | 7165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-29 20:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4839576..4840111 | 224..759 | 2665 | 99.8 | Plus |
| 2L | 23513712 | 2L | 4840161..4840641 | 750..1230 | 2405 | 100 | Plus |
| 2L | 23513712 | 2L | 4839303..4839512 | 17..226 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 7327027..7328192 | 1336..171 | 940 | 72 | Minus |
| 2L | 23513712 | 2L | 4840883..4841008 | 1349..1474 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 4840695..4840813 | 1231..1349 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-04-29 20:18:43 has no hits.
BS33582.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-29 20:19:02 Download gff for
BS33582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12194-RC | 381..1837 | 17..1473 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-29 20:19:02 Download gff for
BS33582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4840884..4841007 | 1350..1473 | 100 | | Plus |
| 2L | 4839303..4839510 | 17..224 | 100 | -> | Plus |
| 2L | 4839577..4840104 | 225..752 | 100 | -> | Plus |
| 2L | 4840164..4840641 | 753..1230 | 100 | -> | Plus |
| 2L | 4840695..4840813 | 1231..1349 | 100 | -> | Plus |
BS33582.pep Sequence
Translation from 16 to 1473
> BS33582.pep
MSREERKPIVSSSSSSTCSSSDDEVHPVVRRRSTRDTELAGHQKDAGCCD
PTSTPHRFLALLFMCLLGFGSYFCYDNPGALQDVFQKELQLSSTEFTLIY
SIYSWPNIVLCFVGGFLIDRVFGIRLGTIIYMLIVLVGQLIFATGGVLGH
FWLMIVGRFVFGIGAESLAVAQNSYAVLWFKGKEINMVFGLQLSVARFGS
TVNFWIMQPLYGYVSKSYSGYKGLGVALFLASSTCVMSLVCTLILGWMDK
RAERILKRNNNPGGELAKLSDIVTFKLDFWMVSVVCVAYYVAIFPFVALG
QAFFVSNFHMTPDEANTVNSIVYLISAIASPLFGFVIDKVGRNVTWVFCA
TISTLLAHFLLTFTHLDPYIGMSIMGLSYSMLAASLWPLVSLIVPEYQLG
TAYGFCQSVQNLGLAVVTIAAGIIVDSSGGSHFWLQVFFMSFLLVSLLAT
CAIWAYNRKHQGNLNMSPAQRATYHTSMYVNIESS*
BS33582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-04-29 20:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12194-PC | 485 | CG12194-PC | 1..485 | 1..485 | 2524 | 100 | Plus |
| CG12194-PA | 485 | CG12194-PA | 1..485 | 1..485 | 2524 | 100 | Plus |
| CG12194-PB | 496 | CG12194-PB | 1..478 | 1..478 | 2486 | 99.8 | Plus |
| CG8602-PB | 478 | CG8602-PB | 1..478 | 1..483 | 1821 | 70 | Plus |
| CG8602-PA | 478 | CG8602-PA | 1..478 | 1..483 | 1821 | 70 | Plus |
