BS33584.complete Sequence
953 bp assembled on 2015-03-10
GenBank Submission: KX803260
> BS33584.complete
GAAGTTATCAGTCGACATGACACAAATGTCATACAAGGTTGAAGCTGTTC
CCGATTCCTACGCCGCCCTGGGCGAGGGACCCCACTGGGATGTTGATCGC
CAGAGTCTGTACTACGTGGACCTCGAATCCGCCGGCATTAATCGTTATGA
TTTCAAGCAGAACAAAGTGTACAGGGCTAAAATCGAGGGCGAGATATTTG
CATCGTTCATTCTGCCGGTTGAGAACAAACCGCAGGAGTTTGCCGTAGGA
TGCGGTCTTCGTACGGTCATCGTCCAGTGGGATGGAGTCTCCGCAGTGGC
CAAGGTCACTCGCACCCTGTTCGAGGTGCAGCCGGACCTGAAGGAAAACC
GCCTTAATGATGCCAAAACCGATCCCAATGGCCGTTTTTACGGTGGCACC
ATGGCCGACAGTGGCGACATATTCACCCAATGGAAGGGTGAGCTCTACAG
CTGGCAGGCCGGTGGACAGCCCAACGCTATCCGTAGCAAGGTGGGCATAT
CCAATGGCCTGGCCTGGGATGTCAAGGCCAAGAAGTTCTACTTCATCGAC
ACCAACAACCACGAGGTATTGGCCTATGACTACAATCAGAGCACCGGCGC
CGTAAGCAACCCAAAGGTCATCTTCGATCTGAGGAAGATTCGGCCCGAAG
GACCATTGTTCCCTGATGGCATGACCGTAGACACCGATGGCAATATCTAC
GTGGCCACCTTCAATGGTGGCACCGTCTTCAAGGTCAATCCAAGCACCGG
TAAAATTCTGCTGGAGATCAAAATTCCAACCACCCAAATCACCTCGGTGG
CTTTTGGAGGTCCCAATTTGGATATTTTGTATGTGACAACCGCCAACAAG
TTCGACCAGCCAAAACCAGCTGGTACCACCTTCCAGGTCACTGGGCTCAA
TGCCAAGGGTTACGCCGGCGTTAATTTGAAGATCTAGAAGCTTTCTAGAC
CAT
BS33584.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-03-10 14:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smp-30-RC | 921 | CG7390-PC | 1..921 | 17..937 | 4605 | 100 | Plus |
| smp-30-RD | 912 | CG7390-PD | 1..912 | 26..937 | 4560 | 100 | Plus |
| smp-30-RB | 912 | CG7390-PB | 1..912 | 26..937 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smp-30-RC | 1102 | CG7390-RC | 118..1039 | 17..938 | 4610 | 100 | Plus |
| smp-30-RD | 1297 | CG7390-RD | 321..1234 | 25..938 | 4570 | 100 | Plus |
| smp-30-RB | 1219 | CG7390-RB | 53..965 | 26..938 | 4565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-03-10 14:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14746407..14747125 | 744..26 | 3595 | 100 | Minus |
| 3R | 32079331 | 3R | 14746155..14746350 | 938..743 | 980 | 100 | Minus |
| X | 23542271 | X | 12015999..12016718 | 22..741 | 480 | 71.1 | Plus |
Blast to na_te.dros performed on 2015-03-10 14:09:17 has no hits.
BS33584.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-03-10 14:11:59 Download gff for
BS33584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smp-30-RC | 118..1038 | 17..937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-03-10 14:11:59 Download gff for
BS33584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14746156..14746348 | 745..937 | 100 | <- | Minus |
| 3R | 14746407..14747128 | 23..744 | 99 | | Minus |
BS33584.pep Sequence
Translation from 16 to 936
> BS33584.pep
MTQMSYKVEAVPDSYAALGEGPHWDVDRQSLYYVDLESAGINRYDFKQNK
VYRAKIEGEIFASFILPVENKPQEFAVGCGLRTVIVQWDGVSAVAKVTRT
LFEVQPDLKENRLNDAKTDPNGRFYGGTMADSGDIFTQWKGELYSWQAGG
QPNAIRSKVGISNGLAWDVKAKKFYFIDTNNHEVLAYDYNQSTGAVSNPK
VIFDLRKIRPEGPLFPDGMTVDTDGNIYVATFNGGTVFKVNPSTGKILLE
IKIPTTQITSVAFGGPNLDILYVTTANKFDQPKPAGTTFQVTGLNAKGYA
GVNLKI*
BS33584.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-03-10 14:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smp-30-PC | 306 | CG7390-PC | 1..306 | 1..306 | 1614 | 100 | Plus |
| smp-30-PD | 303 | CG7390-PD | 1..303 | 4..306 | 1599 | 100 | Plus |
| smp-30-PB | 303 | CG7390-PB | 1..303 | 4..306 | 1599 | 100 | Plus |
| smp-30-PA | 303 | CG7390-PA | 1..303 | 4..306 | 1599 | 100 | Plus |
| regucalcin-PB | 303 | CG1803-PB | 1..303 | 4..306 | 1173 | 71.9 | Plus |
