BS33604.complete Sequence
1682 bp assembled on 2015-04-29
GenBank Submission: KX803252
> BS33604.complete
GAAGTTATCAGTCGACATGGCATCCACACGCATGATCAGTGCTTTTACGC
GCAATCCAAGATTATATCAACAGGTCACGGCACCCTGGAAATCGTACAAT
CTGTTTGGAACACCACTTTTTAACCACAGACTTCAGCCAGCGGATTCTCA
AATCTGGAGGGGATTAGCAGACAAGTGTGACAACAAGACTGTTATCAAGG
GCGTGGTGGTGGGCGTCTACTCCAAGGAGGGCGACGGTAAGGAGGTCAAG
ATGACGTCCAGCGGCGAGAAGTTCGACGACCGAACTCAGGGCAAGGTCTC
GGAGCTGTTGCGCGAAACTGGAATCAAGGGGGAACTGGGCAAGGGTAAGG
TCTTCATGAACGTGGATGCCGAATTCCGGGCAGTGGCTGTGGTGGGTTTG
GGCCAAGAAGGTGCCGGCTTCAATGACCTGGAGAATATCGACGAGGGTAT
GGAGAATGCCCGCGTTGCCGCTGGCGTCGGAGCTCGGGCATTGCAACTGC
AGGGTTGCACGGAAGTCTTTGTGGACTCCATGGAATATCCGGAGCAGGCG
GCGGAGGGCAGTGCTCTGGCCATCTGGCGTTACAATAGCAACAAGCGCAA
GCAGGATCGCACTCAGGTACCCAAACTGGATCTGTACGACTCACCGGATG
TGGATGCCTGGACGAGGGGTCTCTTCAAGGCGGAATCTCAGAACTTGGCT
CGAAGATTGAGCGATTCGCCGGCTAATCAGATGACCCCCACCATATTCGC
CCAATCGGCGGTGGATGCCCTGTGTCCGTGCGGCGTTTCCGTGGAGGTGC
GATCCATGGATTGGATAGAAATGAATCATCTCAATTCGTTTCTAATGATA
GCCAAAGGCAGCTGCGAGCCACCGGTGGTCCTGGAGGTCAGCTACTGCGG
CACAGCACCCGAGGATCGGCCCATTCTGCTATTGGGCAAGGGTTTGACCT
ACAACAGTGGCGGATTGTGCCTGCGGCCAAAGGATTGCCTGCATATGTAC
CGTGGCTGCATGGCCGGAGCAGCCGTTTGTGTGGCCGCCGTTCGAGCTGC
GGCAGCCCTTTCCCTGCCTGTAAACATCACGGCCGTACTGCCGCTCTGCG
AGAATATGCCATCGGGAATGGCTGTAAAGCCGGGTGATGTGGTCACCCTG
CTCAATGGCAAGACGATGGGTATTGTGGATGTGAGCAAAGCTGGAACGGT
GGTATTGGCTGATCCCCTGCTCTTTGCCCAGACGACGTACAAGCCTCGTC
TGGTGGTGGACTTGGCCACCGTTGGCTATGGCGTCTGTGCTGGCCTTGGA
GAATCGGCTGCCGGATTGTTTACCAATTCCAATTTCATAGCCAAGCAGTT
CGAGAAGGCTGGCGGCCTGACTGGAGATCGTTTATGGAGGCTGCCCTTGT
GGCGCTACTTCAAGCAGCTGGTAACCCCGAATCTCACCTTCGACATCAGC
AATAGGGGCATTGGTCCCGCTTCCAGTTGCATTGCTGCCGCCGTGCTGCA
CGAACTGGTTCCATGCGCGGATTGGGCCCACATTGATATCCGGAATGTGG
GCATGCTGACACGCCACAATCCGCTGCCGTATCTGCTCAAGGATCGGATG
ACCGGCCGACCCACCCGCACCATCGTACAGTTCCTGTATCAGATGGCCTG
TCCGGAAAGCAAGTAGAAGCTTTCTAGACCAT
BS33604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2015-04-29 20:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap5-RA | 1650 | CG18369-PA | 1..1650 | 17..1666 | 8190 | 99.8 | Plus |
| loopin-1-RC | 1581 | CG4750-PC | 361..1166 | 440..1245 | 955 | 74.6 | Plus |
| loopin-1-RA | 1581 | CG4750-PA | 361..1166 | 440..1245 | 955 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-04-29 20:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap5-RA | 2074 | CG18369-RA | 146..1795 | 17..1666 | 8190 | 99.8 | Plus |
| loopin-1-RC | 2078 | CG4750-RC | 549..1354 | 440..1245 | 955 | 74.6 | Plus |
| loopin-1-RA | 2022 | CG4750-RA | 615..1420 | 440..1245 | 955 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-04-29 20:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13596822..13598471 | 17..1666 | 8190 | 99.8 | Plus |
| 2R | 25286936 | 2R | 16535557..16536362 | 440..1245 | 955 | 74.6 | Plus |
| 2R | 25286936 | 2R | 16491721..16492511 | 378..1168 | 745 | 72.9 | Plus |
| 2R | 25286936 | 2R | 13779070..13779660 | 955..365 | 450 | 71.7 | Minus |
| 3L | 28110227 | 3L | 10467068..10467380 | 618..930 | 395 | 75.1 | Plus |
| 3L | 28110227 | 3L | 10491463..10492034 | 384..955 | 340 | 70.6 | Plus |
| 3L | 28110227 | 3L | 10492170..10492349 | 1091..1270 | 195 | 73.9 | Plus |
Blast to na_te.dros performed on 2015-04-29 20:18:46 has no hits.
BS33604.complete Sim4 Records
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-04-29 20:19:05 Download gff for
BS33604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap5-RA | 146..1795 | 17..1666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-04-29 20:19:05 Download gff for
BS33604.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13596822..13598471 | 17..1666 | 99 | | Plus |
BS33604.pep Sequence
Translation from 16 to 1665
> BS33604.pep
MASTRMISAFTRNPRLYQQVTAPWKSYNLFGTPLFNHRLQPADSQIWRGL
ADKCDNKTVIKGVVVGVYSKEGDGKEVKMTSSGEKFDDRTQGKVSELLRE
TGIKGELGKGKVFMNVDAEFRAVAVVGLGQEGAGFNDLENIDEGMENARV
AAGVGARALQLQGCTEVFVDSMEYPEQAAEGSALAIWRYNSNKRKQDRTQ
VPKLDLYDSPDVDAWTRGLFKAESQNLARRLSDSPANQMTPTIFAQSAVD
ALCPCGVSVEVRSMDWIEMNHLNSFLMIAKGSCEPPVVLEVSYCGTAPED
RPILLLGKGLTYNSGGLCLRPKDCLHMYRGCMAGAAVCVAAVRAAAALSL
PVNITAVLPLCENMPSGMAVKPGDVVTLLNGKTMGIVDVSKAGTVVLADP
LLFAQTTYKPRLVVDLATVGYGVCAGLGESAAGLFTNSNFIAKQFEKAGG
LTGDRLWRLPLWRYFKQLVTPNLTFDISNRGIGPASSCIAAAVLHELVPC
ADWAHIDIRNVGMLTRHNPLPYLLKDRMTGRPTRTIVQFLYQMACPESK*
BS33604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2015-04-29 20:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap5-PA | 549 | CG18369-PA | 1..549 | 1..549 | 2870 | 100 | Plus |
| S-Lap8-PA | 534 | CG4439-PA | 30..533 | 41..545 | 1883 | 69.1 | Plus |
| loopin-1-PC | 526 | CG4750-PC | 30..524 | 47..545 | 1780 | 67.5 | Plus |
| loopin-1-PA | 526 | CG4750-PA | 30..524 | 47..545 | 1780 | 67.5 | Plus |
| S-Lap7-PB | 527 | CG13340-PB | 34..527 | 55..549 | 1733 | 64.4 | Plus |
