Clone FI01002 Report

Search the DGRC for FI01002

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:10
Well:2
Vector:pFlc-1
Associated Gene/TranscriptMED16-RA
Protein status:FI01002.pep: gold
Sequenced Size:2763

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
MED16 2008-04-29 Release 5.5 accounting
MED16 2008-08-15 Release 5.9 accounting
MED16 2008-12-18 5.12 accounting

Clone Sequence Records

FI01002.complete Sequence

2763 bp (2763 high quality bases) assembled on 2006-09-14

GenBank Submission: BT025233

> FI01002.complete
GGTGTTGGCAGACGCCGGGTGCAAAACAATAATAGTCCGCTTTGGTTTTT
GTTTACGCTGCAAAAATGACGATTTTGTACAAAGTGGAGGGCAAGGAGTT
CAGCAAGGACAGCGTTTTTCCGCACAAGAAGGTCCTCTGCTCAGTCTCCG
CACGGAACATCGTTGCGTTTAGCGCCCTCCAGAGCGCCATATTTCCGGCT
TCCCACGGAGGAGATGCCGGCGATGGATCCTTGCCGGGAGCGGGTTTGGC
CGTAGGCGCGAGCAACAGCCATGTGTACGTGTGCGACATCGTGACGCCGT
GGGAATACTATAAGGTGTGCTCCTCCAAATCGCTTATCAGCGTCCTCCAG
TGGAGTCCCAATGGGGAGCAACTGCTGCTTGGATACGTCGGCGGTCGCGT
CGAGATCTGGCAGCCGAGGAACCAGTCAATTAACCTATGGGTGCTGCAGT
ATTACGCCACCGTGCCCAGCGAGGACATTATAGAAGCACAGTTCTTTCAG
AATGGCAAAGGAGTGATCTTCAATGCGCTGAAGAAGGATCACACCTACTA
TGCGGAGAAGTTCGAGCGGGTGGAGCAGCAGAGGCCCACTCTCAGCGGAT
TTGGCGGAGTGGCCAGCGAGGGATGCGTGCTACTCACTTCCTCAGGCCTG
CTGGCCGCCTTCAGTCTCCCCGCAATCCAAAAGACATCCGCCGCAGGAGC
TGATGGTCCTGCCCACGAGGTCGTCGAGTTGACACCCGCGCTCCACAGCA
TCGGCATATCGCGCAGCTTCATCGAACACTGCAGCATGACGCCAAGTCCA
TCGGGAGCCCTTAATATCGCTTTCAGCTGTGGCTGGCAGCAACAGTTGGT
GCAATGCTTTAAGGTCTCGCTTTCATTGGAGGGCGAACTGGGTCTGGAGC
AGCACTTGGCCATCAAATCCGAGTCCCAGACCAGCATATTTCTGGGTCCT
CTTGACGGGAGGCGGATCAGTCACCTAAAATGGACGCGAATAGCCAACGA
GGATGTGATTTTTATAGCCTACGCTTGTCCAGATGGTGCTGGCAGCCAAC
TGGAGCAATGGACATTGACACGCCGTCACCAAAGTGTCCACGCCCTTCTC
CAGGGTGGAGGAGGTGCCAACAACAAGCCAAATGAGTTCGTGCAATCGGA
AAGCTGGGAGCAGGTGGGCAAAGTGCAACTAAATGCATCCTTGGCGGATA
TCAGCGTTACACGACTATCGGTATCAACGCCGGACTCTTGCCAAGTGTAC
GCCATTCTGCAGGACAACAGCGTCCAGGTGCTGGAGCCCAACTCGATGAA
GCAGCTTAATCACACCCAGTTTGATAGGTTATCTGACGCCAGTGGAGCAG
TAAAGTTCGTTAGCGGCGACTTGACACCTAGCAGCCAAATTCTCCTAATC
TTTGATAGCCATGCACAACTTTACGCCATGCAGGCACCTCTGCCGAAGCA
AGGAGGATCTGGTTTGCTACTTCTGGAATATTGCATCGTTACAGGTTGCG
ATGCCAGCGATGTGCTACTCCTTAATCTAGGCAACCTGGAGGCTCTGGTG
GAGAAGCTAACCGACAACTTTACGCGGCAACCTTCCTTTGTGCGGCACTT
TTATTATGCTAATTTTTTGGCCCTCAAGTCCAACATATGCCGCATGCAGC
AGCAGGAGTTTGACAATCTCATTATCCTACACGCAATATCCACCACATTC
AAGAGCCTCCTGCGACCGTCTGATCTGGGTTTCCAGGATAAAGGACCTGC
CGATAACTTGGCCATCAAGCTGGCCGAATCCATTCCGGATGTGGACACCG
TGATGCTGAACCTGGACGCCAAGGACTTTACAGTGGAGCCGGTGATGCTG
CAAAGTCTACAGCAACTGATTCAGTGGGTCACCGACCTGGCACTCAACAT
GCTGCATCGTCTGCCCGAGGAGGTAATGAAGACCAAGCTCTCCGGAAAGC
GGCCTAGCTACGATATCAGCCGAGACATCGTGGCCATCAGCAGTCTGCGC
GAGCTGCTGGTTATGATCCGCATTTGGGGCCTGTTAAACACCCAGTGCCT
GCCCGTCTACACCAAGACGATGGACAACATCGATGTGCTAGTGATCTTGT
TTCGTTTGCTTACTCGCCTGGCCCAGAATCCTGCAGAACCGGACGAAATG
CTGCTGGACGAGTGCAGCCTGCTTTCCAAGCAGCTCCTAATTCCCCAGCC
CACCAAGTTCAACCCCACCACGCTGCTGAGTGCCCAAGGATTCGCGGCCG
TAAAGTCGGGACAGCTGCAGTTCACCTCCATGGAGGAGCCAACTTGCTTG
CAGGACATGGAGACGGAGGAGGTGGTCTTCGCCAGCTCTGTGAAGGATGG
CGTGAGCAATCTCCAACTGGGCGCCCGACCCAGCCACATTCGGAGATGCG
CCCGCTGCGGATTCGTGTTCGTGAATAACGCCAGCAAAGTGGCCAAGACG
TCGGCCCTCAAGGCGTGGTTTAGTAAGTGGCTGCACTGCCACTGTGGGGG
CTTTTGGAAGCAGGTTCACTAGTAAATCTATGTGAGCAATGACCTTAGTT
ATTAAGTATGATTTAAGCTTCAAATAAAAGTACATGATTGCCAGCAATTT
TAGTGAAATCAAGAAATTTAATATACTAAATATATTTCTTCTTTGCACGA
CGTGCTCGTTCAAAAAACTTAAGCCACAGAGAAGTCACCACCATACTTCA
CTATTTCAAAACTAAATTTATTTGAATAAAATATATTTTTTAACTCTGAA
AAAAAAAAAAAAA

FI01002.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
MED16-RA 2747 MED16-RA 2..2747 2..2747 13730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18069678..18072424 2..2747 13265 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:04:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22183147..22185892 2..2747 13730 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22184346..22187091 2..2747 13730 100 Plus
Blast to na_te.dros performed on 2019-03-15 13:07:53 has no hits.

FI01002.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:09:07 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18069677..18072387 1..2711 98 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:33:24 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 1..2457 66..2522 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:20:12 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 1..2457 66..2522 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:57:29 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 1..2457 66..2522 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:49:11 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 1..2457 66..2522 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:21:52 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 1..2457 66..2522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:57:22 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 2..2747 2..2747 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:20:12 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 1..2746 2..2747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:57:29 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 9..2755 1..2747 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:49:11 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 2..2747 2..2747 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:21:52 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
MED16-RA 9..2755 1..2747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:07 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22183146..22185892 1..2748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:07 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22183146..22185892 1..2748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:09:07 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22183146..22185892 1..2748 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:57:29 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18070651..18073397 1..2748 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:08:43 Download gff for FI01002.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22184345..22187091 1..2748 99   Plus

FI01002.pep Sequence

Translation from 65 to 2521

> FI01002.pep
MTILYKVEGKEFSKDSVFPHKKVLCSVSARNIVAFSALQSAIFPASHGGD
AGDGSLPGAGLAVGASNSHVYVCDIVTPWEYYKVCSSKSLISVLQWSPNG
EQLLLGYVGGRVEIWQPRNQSINLWVLQYYATVPSEDIIEAQFFQNGKGV
IFNALKKDHTYYAEKFERVEQQRPTLSGFGGVASEGCVLLTSSGLLAAFS
LPAIQKTSAAGADGPAHEVVELTPALHSIGISRSFIEHCSMTPSPSGALN
IAFSCGWQQQLVQCFKVSLSLEGELGLEQHLAIKSESQTSIFLGPLDGRR
ISHLKWTRIANEDVIFIAYACPDGAGSQLEQWTLTRRHQSVHALLQGGGG
ANNKPNEFVQSESWEQVGKVQLNASLADISVTRLSVSTPDSCQVYAILQD
NSVQVLEPNSMKQLNHTQFDRLSDASGAVKFVSGDLTPSSQILLIFDSHA
QLYAMQAPLPKQGGSGLLLLEYCIVTGCDASDVLLLNLGNLEALVEKLTD
NFTRQPSFVRHFYYANFLALKSNICRMQQQEFDNLIILHAISTTFKSLLR
PSDLGFQDKGPADNLAIKLAESIPDVDTVMLNLDAKDFTVEPVMLQSLQQ
LIQWVTDLALNMLHRLPEEVMKTKLSGKRPSYDISRDIVAISSLRELLVM
IRIWGLLNTQCLPVYTKTMDNIDVLVILFRLLTRLAQNPAEPDEMLLDEC
SLLSKQLLIPQPTKFNPTTLLSAQGFAAVKSGQLQFTSMEEPTCLQDMET
EEVVFASSVKDGVSNLQLGARPSHIRRCARCGFVFVNNASKVAKTSALKA
WFSKWLHCHCGGFWKQVH*

FI01002.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11654-PA 811 GF11654-PA 1..811 1..818 3818 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22172-PA 820 GG22172-PA 1..820 1..818 4155 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23074-PA 848 GH23074-PA 1..848 1..818 2905 67.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
MED16-PA 818 CG5465-PA 1..818 1..818 4224 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21142-PA 811 GI21142-PA 1..811 1..818 2998 70.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11786-PA 805 GL11786-PA 1..805 1..818 3605 83.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18899-PA 805 GA18899-PA 1..805 1..818 3605 83.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15892-PA 820 GM15892-PA 1..820 1..818 4267 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11651-PA 724 GD11651-PA 23..724 119..818 3650 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20989-PA 799 GJ20989-PA 1..799 1..818 3054 71.8 Plus
Dvir\GJ14668-PA 198 GJ14668-PA 1..187 143..320 589 63.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21766-PA 832 GK21766-PA 1..832 1..818 2999 71.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14164-PA 820 GE14164-PA 1..820 1..818 4216 95.9 Plus

FI01002.hyp Sequence

Translation from 65 to 2521

> FI01002.hyp
MTILYKVEGKEFSKDSVFPHKKVLCSVSARNIVAFSALQSAIFPASHGGD
AGDGSLPGAGLAVGASNSHVYVCDIVTPWEYYKVCSSKSLISVLQWSPNG
EQLLLGYVGGRVEIWQPRNQSINLWVLQYYATVPSEDIIEAQFFQNGKGV
IFNALKKDHTYYAEKFERVEQQRPTLSGFGGVASEGCVLLTSSGLLAAFS
LPAIQKTSAAGADGPAHEVVELTPALHSIGISRSFIEHCSMTPSPSGALN
IAFSCGWQQQLVQCFKVSLSLEGELGLEQHLAIKSESQTSIFLGPLDGRR
ISHLKWTRIANEDVIFIAYACPDGAGSQLEQWTLTRRHQSVHALLQGGGG
ANNKPNEFVQSESWEQVGKVQLNASLADISVTRLSVSTPDSCQVYAILQD
NSVQVLEPNSMKQLNHTQFDRLSDASGAVKFVSGDLTPSSQILLIFDSHA
QLYAMQAPLPKQGGSGLLLLEYCIVTGCDASDVLLLNLGNLEALVEKLTD
NFTRQPSFVRHFYYANFLALKSNICRMQQQEFDNLIILHAISTTFKSLLR
PSDLGFQDKGPADNLAIKLAESIPDVDTVMLNLDAKDFTVEPVMLQSLQQ
LIQWVTDLALNMLHRLPEEVMKTKLSGKRPSYDISRDIVAISSLRELLVM
IRIWGLLNTQCLPVYTKTMDNIDVLVILFRLLTRLAQNPAEPDEMLLDEC
SLLSKQLLIPQPTKFNPTTLLSAQGFAAVKSGQLQFTSMEEPTCLQDMET
EEVVFASSVKDGVSNLQLGARPSHIRRCARCGFVFVNNASKVAKTSALKA
WFSKWLHCHCGGFWKQVH*

FI01002.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
MED16-PA 818 CG5465-PA 1..818 1..818 4224 100 Plus