Clone FI01009 Report

Search the DGRC for FI01009

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:10
Well:9
Vector:pFlc-1
Associated Gene/Transcriptvri-RC
Protein status:FI01009.pep: gold
Sequenced Size:3075

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
vri 2008-04-29 Release 5.5 accounting
vri 2008-08-15 Release 5.9 accounting
vri 2008-12-18 5.12 accounting

Clone Sequence Records

FI01009.complete Sequence

3075 bp assembled on 2007-03-07

GenBank Submission: BT030402

> FI01009.complete
ATGTTAAGTGATTTCTCAAGTGCGCTGTCTTGTGGCCAGCGATGAAAACA
CACAAAGCCCCATGGATTTCTCAGCCGTTCTGATAAGAGTCATAAATACG
GCTAATTCCCCGCATCCAAGCTCAAAGCAACAACAGCCATCTGCAACACC
AGCAGCAACTGCAGCAGAAACTAGCGCAGCTGCATCACTACAGCCAGCAG
AAGCTGAGCGGCAGCGACTTTCCCTACGGGCCACGCCCCCCCACCGGAGG
CAAAGAGGAGAAGCTGCTCCTGCTAGCGCCGCCGGGCAAACTCTATCCGG
AGGCGTCTGTGTCCACAGCAATGCCCGAGGTCCTCAGCGGCACGCCCACC
AACAGCCACAACAAAGCCAACATCGCCATGATGAACAACGTCCGGCTATC
CAATATATCGCCGACTCTCTCGATGAACGGCAGCTCCAACGAGGCTTCTA
ACTTGCATCCGTTGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAAAT
GACAGCGGCATGTCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTA
TGGAGATGGAATGATGGCCCAGTCGCCCTCACAGGGTGGCAATGGACCGC
AGTCGGCGTTGACCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAA
CGCGAATTCACCCCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCG
GAGAAGGAACAACGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACA
ATGACATGGTTCTGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAACCAT
GTGCTGAAGGCCCAGCTGGACGCCATACGCGACAAGTTCAACATCTCCGG
CGAGAATCTGGTGAGCGTGGAGAAGATCCTCGCCTCGCTGCCCACCAGCG
AACAGGTGCTGAGTAACACAAAGCGCGCCAAGATGAGCGGCAGTGGTGGC
TCCTCCTCGGGCTCCTCGCCCTCGGGCAGTGGATCGGGCGAGGGATCGCC
TCAAGGTGGCCACAATGGCTATCCGGTGGGTCCACCACTATCTCCACTGA
TCTACGGACCCAATGGCAATGCCCGGCCAGAGGCCACGGTTAAGAGTGTC
CACCACATACATCATGCGGGTGTTGCGCCGCCACCAACGCACCTACAACA
GTTGGTTGTGCCCCAGTCCCAGACACAGCATCTCTACCAGCCACAGCCGC
AGCAGCATCAGCCGCATCAGCAGCAGCAGATTTCCCAGCCACCGCAGCAA
CAACAGCAGCAGCAGGAGCCAAGTCCCAGTGCCGGCTCCAGTTCGCCAGT
CATCTCCGATCCGCACAACCGCCCGCCAAGCACCACCATTGCCAATCTCC
AGGTGCAACTGCAGCAGGCACTAAACCGCAATGTCAGGCCCGAGGATCTG
GACAGCTTGCGCAAGGTGGTGGCCGCCGGCGCTCTATACAATGCGGCAGC
CGTGGTGGGAGCACCACCACCGCCACCATCTGCTGGTCTCTACGTGCCCG
CTCCCAGCGCCTATAAGGATCACCTGGAAGCGGCTGCAGCCTGGAGCCAC
AATGTCGAGGCTGCTGTGAGCAGCAGTGCTGTGGATGCGGTCAGTAGCTC
ATCGGTGTCCGGCAGTGCGGCCAGTGTGCTGAATCTATCGCGTCGGGCCT
GCTCACCCAGCTACGAGCACATGCTCTCCTCCACCACCTCCTCCACTCTT
TCCTCGGCCTCCTCATCGGGAGCTGTTTCCGGCGATGATGAGCAGGAGCA
CGAACCAGCGCACATGGCTCCACTGCAGCTGCAGCGAAGCAGTCCGCAGC
AGGGCAGCGATGCCAACAACTGTCTGCCCCTCAAGCTGCGCCACAAGTCC
CATCTCGGCGACAAGGATGCGGCGGCCACGGCGCTACTCTCACTGCAGCA
CATCAAGCAGGAGCCCAACTGCAGTCGGGCATCGCCGCCGGCTTGGAACG
ATGGCGGCGACAATTCCAGCGACGAAAGGGACTCCGGCATCTCCATCGCC
AGTGCGGAGTGGACGGCGCAGCTGCAGAGGAAGCTACTGGCGCCCAAGGA
GGCCAATGTGGTAACCAGTGCCGAGCGCGATCAAATGCTCAAGTCGCAGC
TGGAGCGCCTAGAGTCCGAGGTGGCCAGCATCAAGATGATCTTGGCGGAG
TAAGCAAGCCCCTGTCCAAGCTGGACAGGATCACGACTAGGCGGATCAGG
AGAGAGAGCGAAGAGACAGAGGCTCTGAAGGGATCAGAGTCGGGGGAGCA
GAGCAGTAGATGGCAAAGCAGAGAGTTCCATGGCGCCAGTAGTTCTCCTG
GACAAAGAAGTTGGTTTAAGCATATGTTAGTAGAGATGTCCAAAACCGAG
TGATAACTATTAGATACCGATGCATGCATGTCTCCATCTCTATGTAGAAC
TCTAGGGCCAGGTCTGGACCACAAGGATTTGACACAAGACCCTGTGGCCC
GAAACTGGCCAACACTTATCTGTGTGTATGTTTATCTATCCACTGTATTG
AGTCTTGTAATAGTGAATGTTTAACTATATAGATCTCGTCAACTCGGAGC
TAAAAAAAAATCCTTAGGGTCAGCCCAAAAGAATTTCTAATTTAACCTGT
TTGTTGTATACACACAAGCTATTTGTTTGCATAGCTAGCTGGTGACCTGC
GATGAGCATCGGGGTCACCAGCCACGTTATTGTTCTCTTATGCATCCCAA
GTTTCCTTATGCACAGCGAAAGTGGAGAAGATAAAGAATTATTATGTTTG
TAAGCAAACGTTACAAAGTATTTGCTGTTGTACATATTACACAATTAATT
ATATATACTATATAACTATACAGATATCTATATTCCTATCATGTACATAA
TTTTAGTTGCAAGCTAAGCTTATTTTATTTTATTTTATTTTACTTTGTAT
TGAGTACTATTATTATTATTATTATTATGTAGTGAAACAAACATATACAT
TACACTTAAGAAACGCGTGAAGCACATTCAAAACGTGAGAGATGAAAGAA
ATCTGAAAAGAATTGATGAATAAATTCTGCAATAAATAATTTTAAATATC
CTCCTACCAAAAAAAAAAAAAAAAA

FI01009.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
vri-RC 3058 vri-RC 1..3058 1..3058 15275 99.9 Plus
vri.a 3577 vri.a 173..3125 106..3058 14750 99.9 Plus
vri.c 3991 vri.c 587..3539 106..3058 14750 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5307120..5309724 454..3058 13010 100 Plus
chr2L 23010047 chr2L 5306664..5307011 106..453 1740 100 Plus
chr2L 23010047 chr2L 5298746..5298850 1..105 525 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:04:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5308021..5310625 454..3058 13010 100 Plus
2L 23513712 2L 5307565..5307912 106..453 1740 100 Plus
2L 23513712 2L 5299647..5299751 1..105 525 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5308021..5310625 454..3058 13010 99.9 Plus
2L 23513712 2L 5307565..5307912 106..453 1740 100 Plus
2L 23513712 2L 5299647..5299751 1..105 525 100 Plus
Blast to na_te.dros performed 2019-03-16 16:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 6619..6761 2903..3049 157 60.1 Plus
Stalker 7256 Stalker STALKER 7256bp 6513..6653 2903..3049 153 60.1 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 555..663 2789..2893 148 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2482..2543 126..188 132 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6946 146..378 128 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1587 117..180 120 68.7 Plus

FI01009.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:47 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5298746..5298850 1..105 100 -> Plus
chr2L 5306664..5306683 106..125 100 == Plus
chr2L 5306774..5307011 216..453 100 -> Plus
chr2L 5307120..5307847 454..1181 100 == Plus
chr2L 5307936..5309535 1270..2869 99 == Plus
chr2L 5309595..5309724 2929..3058 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:09:57 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RD 143..2190 106..2153 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:07:13 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RD 143..2190 106..2153 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:38 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 143..2190 106..2153 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:17:15 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 143..2190 106..2153 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:30:47 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 143..2190 106..2153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:09:56 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RC 1..3058 1..3058 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:07:12 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RC 1..3058 1..3058 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:38 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RC 1..3058 1..3058 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:17:16 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RC 1..3058 1..3058 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:30:47 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RC 1..3058 1..3058 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:47 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5299647..5299751 1..105 100 -> Plus
2L 5307565..5307912 106..453 100 -> Plus
2L 5308021..5310625 454..3058 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:47 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5299647..5299751 1..105 100 -> Plus
2L 5307565..5307912 106..453 100 -> Plus
2L 5308021..5310625 454..3058 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:47 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5299647..5299751 1..105 100 -> Plus
2L 5307565..5307912 106..453 100 -> Plus
2L 5308021..5310625 454..3058 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:38 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5299647..5299751 1..105 100 -> Plus
arm_2L 5307565..5307912 106..453 100 -> Plus
arm_2L 5308021..5310625 454..3058 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:40:26 Download gff for FI01009.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5299647..5299751 1..105 100 -> Plus
2L 5307565..5307912 106..453 100 -> Plus
2L 5308021..5310625 454..3058 99   Plus

FI01009.pep Sequence

Translation from 320 to 2152

> FI01009.pep
MPEVLSGTPTNSHNKANIAMMNNVRLSNISPTLSMNGSSNEASNLHPLSM
YGGSISPQSNDSGMSDSLGKYVPGSGYGDGMMAQSPSQGGNGPQSALTAA
QKELFSQRKQREFTPDNKKDESYWDRRRRNNEAAKRSREKRRYNDMVLEQ
RVIELTKENHVLKAQLDAIRDKFNISGENLVSVEKILASLPTSEQVLSNT
KRAKMSGSGGSSSGSSPSGSGSGEGSPQGGHNGYPVGPPLSPLIYGPNGN
ARPEATVKSVHHIHHAGVAPPPTHLQQLVVPQSQTQHLYQPQPQQHQPHQ
QQQISQPPQQQQQQQEPSPSAGSSSPVISDPHNRPPSTTIANLQVQLQQA
LNRNVRPEDLDSLRKVVAAGALYNAAAVVGAPPPPPSAGLYVPAPSAYKD
HLEAAAAWSHNVEAAVSSSAVDAVSSSSVSGSAASVLNLSRRACSPSYEH
MLSSTTSSTLSSASSSGAVSGDDEQEHEPAHMAPLQLQRSSPQQGSDANN
CLPLKLRHKSHLGDKDAAATALLSLQHIKQEPNCSRASPPAWNDGGDNSS
DERDSGISIASAEWTAQLQRKLLAPKEANVVTSAERDQMLKSQLERLESE
VASIKMILAE*

FI01009.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14387-PA 733 GF14387-PA 124..733 1..610 2172 81.7 Plus
Dana\GF12658-PA 197 GF12658-PA 110..175 108..173 148 42.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25066-PA 723 GG25066-PA 120..723 1..610 3060 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13383-PA 844 GH13383-PA 112..414 1..263 833 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
vri-PF 729 CG14029-PF 120..729 1..610 3125 100 Plus
vri-PE 610 CG14029-PE 1..610 1..610 3125 100 Plus
vri-PD 729 CG14029-PD 120..729 1..610 3125 100 Plus
vri-PA 729 CG14029-PA 120..729 1..610 3125 100 Plus
vri-PC 610 CG14029-PC 1..610 1..610 3125 100 Plus
CG14478-PD 512 CG14478-PD 6..279 175..470 161 24.5 Plus
CG14478-PC 512 CG14478-PC 6..279 175..470 161 24.5 Plus
CG14478-PB 512 CG14478-PB 6..279 175..470 161 24.5 Plus
CG14478-PA 512 CG14478-PA 6..279 175..470 161 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17625-PA 814 GI17625-PA 141..814 1..610 1692 63 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19569-PA 753 GL19569-PA 124..753 1..610 2054 75 Plus
Dper\GL11555-PA 217 GL11555-PA 130..195 108..173 148 42.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12711-PA 757 GA12711-PA 124..757 1..610 2025 74.9 Plus
Dpse\GA20586-PA 219 GA20586-PA 132..197 108..173 148 42.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18545-PA 728 GM18545-PA 120..728 1..610 3138 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23334-PA 728 GD23334-PA 120..728 1..610 3142 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17539-PA 775 GJ17539-PA 126..775 1..610 1762 64.3 Plus
Dvir\GJ21676-PA 192 GJ21676-PA 106..171 108..173 147 42.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24157-PA 761 GK24157-PA 117..761 1..610 1877 67.2 Plus
Dwil\GK20980-PA 196 GK20980-PA 109..174 108..173 153 43.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25380-PA 730 GE25380-PA 120..730 1..610 3118 97.7 Plus

FI01009.hyp Sequence

Translation from 320 to 2152

> FI01009.hyp
MPEVLSGTPTNSHNKANIAMMNNVRLSNISPTLSMNGSSNEASNLHPLSM
YGGSISPQSNDSGMSDSLGKYVPGSGYGDGMMAQSPSQGGNGPQSALTAA
QKELFSQRKQREFTPDNKKDESYWDRRRRNNEAAKRSREKRRYNDMVLEQ
RVIELTKENHVLKAQLDAIRDKFNISGENLVSVEKILASLPTSEQVLSNT
KRAKMSGSGGSSSGSSPSGSGSGEGSPQGGHNGYPVGPPLSPLIYGPNGN
ARPEATVKSVHHIHHAGVAPPPTHLQQLVVPQSQTQHLYQPQPQQHQPHQ
QQQISQPPQQQQQQQEPSPSAGSSSPVISDPHNRPPSTTIANLQVQLQQA
LNRNVRPEDLDSLRKVVAAGALYNAAAVVGAPPPPPSAGLYVPAPSAYKD
HLEAAAAWSHNVEAAVSSSAVDAVSSSSVSGSAASVLNLSRRACSPSYEH
MLSSTTSSTLSSASSSGAVSGDDEQEHEPAHMAPLQLQRSSPQQGSDANN
CLPLKLRHKSHLGDKDAAATALLSLQHIKQEPNCSRASPPAWNDGGDNSS
DERDSGISIASAEWTAQLQRKLLAPKEANVVTSAERDQMLKSQLERLESE
VASIKMILAE*

FI01009.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
vri-PF 729 CG14029-PF 120..729 1..610 3125 100 Plus
vri-PE 610 CG14029-PE 1..610 1..610 3125 100 Plus
vri-PD 729 CG14029-PD 120..729 1..610 3125 100 Plus
vri-PA 729 CG14029-PA 120..729 1..610 3125 100 Plus
vri-PC 610 CG14029-PC 1..610 1..610 3125 100 Plus