Clone FI01013 Report

Search the DGRC for FI01013

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:10
Well:13
Vector:pFlc-1
Associated Gene/TranscriptSpt3-RA
Protein status:FI01013.pep: gold
Sequenced Size:1425

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Spt3 2008-04-29 Release 5.5 accounting
Spt3 2008-08-15 Release 5.9 accounting
Spt3 2008-12-18 5.12 accounting

Clone Sequence Records

FI01013.complete Sequence

1425 bp (1425 high quality bases) assembled on 2006-09-12

GenBank Submission: BT025228

> FI01013.complete
AAAGGGTTTTATCTATTCTCACGAAATCAGCTGTTGCGATTGAAGTGGTG
ACTTTGTTTGTAAATAAAATGAACTACAACGCCAAGCGAGTAATGCGACA
GAACTCGGTTTGCGTGGGTTCCAACGACATGGCAGCGTCGCCGATAATGA
TTGGACCTGCCCCGCCCTCGGCGCCCAGCACGCCGCAACTGCAGACCACC
GAGGACATCAAGCCACTGCTTGTGCAGCGCCAAGTGATTCTGCTGCAAAG
TGGAAGCATACCGACGAATCCCTCGCCACAGCAGATCAACCTAGCTGGAC
ATAATGTAGCCGGTGGTGCCAGCGGGAGCAACGTTGCCAACGTTCTCATT
CCGGATGATGCACCTGTCTCACTGCTCACAGAGATTGCGGATATCATGCG
AAGCTTCGGCGACAGCGATCAGCCCAGGACGGGAAGTGTCAAGCTGGTGG
AGCAGATCCTGCAGCAGCAGCTGCGCGGCATCTTCAATGAGGCTTCGCTG
GTGGCCATGCGGCGGAAACAGAATCCCTGCCCGTCGCAGGCGGACTTTGA
GTTCCTGATGCGCAACCATCCGGTGAAGATAGCTCGGATGCGAAAGCACC
TCAAGGATATGCGCATACTCAAAAGGTTCCTTAGTATCCGCACGGGAAGG
CCGCAGGACTTCATGGACGACTTGGAGCAGCAGGAGGAGGACGAGGAGCT
GGCCATCGATGTGTACGAGCTACACGACGAGGACCGAATGCGAAGATTAT
TCCGCGCAGATCGGATATCGCAGATCCTTACGGGCCAGCAATACCTGGAG
TTCAATGAGGCGCGCAAGACGTCATTCTACTGCCGCCATGGGGAGAAGAT
CAAGAACAAGTTCCGCCGCTTTCTGGACCTGCCCGCGGACCTTCGCATCC
CAACGCCGACAATGAACATTTTGGCCTATCTGGCGCATGAGACCATTGCC
GCCATTGTCGACTATTCGATCCTGACGCGCCTGAACTCGGACAACCGTGC
GACCGAGCCCTACAGCCGAGTGACCTCCGCCGGAGGCAGTCCGGCTATGA
TGCACGTCTGTCCGGAGGTCACACAGGGTCGCGGCATGGAGGTGGTCAAG
CCAATCAGTGTACCGGAGATCCACGAGGCCATGCGCCGTTTCCGGCAAAT
GAGCAGCCGTAAGATTGGGCGGTATCGCAACTCTTGCGACATCGATTTCC
GGCGCAGTTTTCTAGCCATTTAAGTTTTAATGATCTTAATATCCTCGCCT
ATTTTTATTTGCGTCAATTATTGATTTTATTCACAAAAAATAGACTGTAC
AATTAATTCATTTAAAGTAATTCAATCCCCAACAATTAACGCGCTCTACA
TTTTAATTATACAAATTATAAAATAAAGCAATTTTGGCTCGTTAAAAAAA
AAAAAAATTAAAAAAAAAAAAAAAA

FI01013.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Spt3.a 1451 Spt3.a 59..1451 1..1393 6965 100 Plus
Spt3-RA 1451 Spt3-RA 59..1451 1..1393 6965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7842607..7844003 1..1399 6855 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:04:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12017158..12018556 1..1399 6995 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11757989..11759387 1..1399 6995 100 Plus
Blast to na_te.dros performed 2019-03-15 16:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 4406..4443 434..471 118 78.9 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 1736..1844 1323..1208 111 61.2 Minus
gypsy4 6852 gypsy4 GYPSY4 6852bp 6564..6727 711..868 111 58.1 Plus

FI01013.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:06:44 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7842607..7844003 1..1399 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:34:08 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 1..1155 69..1223 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:20:50 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 1..1155 69..1223 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:52:49 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 1..1155 69..1223 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:51:26 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 1..1155 69..1223 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:57 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 1..1155 69..1223 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:58:58 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 1..1223 1..1223 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:20:50 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 59..1451 1..1393 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:49 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 3..1395 1..1393 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:51:27 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 1..1223 1..1223 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:57 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
Spt3-RA 3..1395 1..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:44 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12017158..12018556 1..1399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:44 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12017158..12018556 1..1399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:06:44 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12017158..12018556 1..1399 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:49 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7842880..7844278 1..1399 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:09:09 Download gff for FI01013.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11757989..11759387 1..1399 100   Plus

FI01013.hyp Sequence

Translation from 2 to 1222

> FI01013.hyp
RVLSILTKSAVAIEVVTLFVNKMNYNAKRVMRQNSVCVGSNDMAASPIMI
GPAPPSAPSTPQLQTTEDIKPLLVQRQVILLQSGSIPTNPSPQQINLAGH
NVAGGASGSNVANVLIPDDAPVSLLTEIADIMRSFGDSDQPRTGSVKLVE
QILQQQLRGIFNEASLVAMRRKQNPCPSQADFEFLMRNHPVKIARMRKHL
KDMRILKRFLSIRTGRPQDFMDDLEQQEEDEELAIDVYELHDEDRMRRLF
RADRISQILTGQQYLEFNEARKTSFYCRHGEKIKNKFRRFLDLPADLRIP
TPTMNILAYLAHETIAAIVDYSILTRLNSDNRATEPYSRVTSAGGSPAMM
HVCPEVTQGRGMEVVKPISVPEIHEAMRRFRQMSSRKIGRYRNSCDIDFR
RSFLAI*

FI01013.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Spt3-PA 384 CG3169-PA 1..384 23..406 1966 100 Plus

FI01013.pep Sequence

Translation from 68 to 1222

> FI01013.pep
MNYNAKRVMRQNSVCVGSNDMAASPIMIGPAPPSAPSTPQLQTTEDIKPL
LVQRQVILLQSGSIPTNPSPQQINLAGHNVAGGASGSNVANVLIPDDAPV
SLLTEIADIMRSFGDSDQPRTGSVKLVEQILQQQLRGIFNEASLVAMRRK
QNPCPSQADFEFLMRNHPVKIARMRKHLKDMRILKRFLSIRTGRPQDFMD
DLEQQEEDEELAIDVYELHDEDRMRRLFRADRISQILTGQQYLEFNEARK
TSFYCRHGEKIKNKFRRFLDLPADLRIPTPTMNILAYLAHETIAAIVDYS
ILTRLNSDNRATEPYSRVTSAGGSPAMMHVCPEVTQGRGMEVVKPISVPE
IHEAMRRFRQMSSRKIGRYRNSCDIDFRRSFLAI*

FI01013.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17227-PA 379 GF17227-PA 1..379 1..384 1809 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18586-PA 385 GG18586-PA 1..385 1..384 2001 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23557-PA 381 GH23557-PA 1..381 1..384 1701 85 Plus
Dgri\GH23654-PA 103 GH23654-PA 1..103 282..384 506 93.2 Plus
Dgri\GH23657-PA 191 GH23657-PA 124..191 317..384 317 88.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spt3-PA 384 CG3169-PA 1..384 1..384 1966 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23555-PA 381 GI23555-PA 1..381 1..384 1680 83.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22261-PA 386 GL22261-PA 1..386 1..384 1640 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16398-PA 386 GA16398-PA 1..386 1..384 1640 86.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23995-PA 384 GM23995-PA 1..384 1..384 2030 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18797-PA 384 GD18797-PA 1..384 1..384 2029 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23533-PA 381 GJ23533-PA 1..381 1..384 1668 82.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13076-PA 374 GK13076-PA 1..374 1..384 1577 84.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26156-PA 385 GE26156-PA 1..385 1..384 2007 97.9 Plus