BDGP Sequence Production Resources |
Search the DGRC for FI01013
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 10 |
Well: | 13 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Spt3-RA |
Protein status: | FI01013.pep: gold |
Sequenced Size: | 1425 |
Gene | Date | Evidence |
---|---|---|
Spt3 | 2008-04-29 | Release 5.5 accounting |
Spt3 | 2008-08-15 | Release 5.9 accounting |
Spt3 | 2008-12-18 | 5.12 accounting |
1425 bp (1425 high quality bases) assembled on 2006-09-12
GenBank Submission: BT025228
> FI01013.complete AAAGGGTTTTATCTATTCTCACGAAATCAGCTGTTGCGATTGAAGTGGTG ACTTTGTTTGTAAATAAAATGAACTACAACGCCAAGCGAGTAATGCGACA GAACTCGGTTTGCGTGGGTTCCAACGACATGGCAGCGTCGCCGATAATGA TTGGACCTGCCCCGCCCTCGGCGCCCAGCACGCCGCAACTGCAGACCACC GAGGACATCAAGCCACTGCTTGTGCAGCGCCAAGTGATTCTGCTGCAAAG TGGAAGCATACCGACGAATCCCTCGCCACAGCAGATCAACCTAGCTGGAC ATAATGTAGCCGGTGGTGCCAGCGGGAGCAACGTTGCCAACGTTCTCATT CCGGATGATGCACCTGTCTCACTGCTCACAGAGATTGCGGATATCATGCG AAGCTTCGGCGACAGCGATCAGCCCAGGACGGGAAGTGTCAAGCTGGTGG AGCAGATCCTGCAGCAGCAGCTGCGCGGCATCTTCAATGAGGCTTCGCTG GTGGCCATGCGGCGGAAACAGAATCCCTGCCCGTCGCAGGCGGACTTTGA GTTCCTGATGCGCAACCATCCGGTGAAGATAGCTCGGATGCGAAAGCACC TCAAGGATATGCGCATACTCAAAAGGTTCCTTAGTATCCGCACGGGAAGG CCGCAGGACTTCATGGACGACTTGGAGCAGCAGGAGGAGGACGAGGAGCT GGCCATCGATGTGTACGAGCTACACGACGAGGACCGAATGCGAAGATTAT TCCGCGCAGATCGGATATCGCAGATCCTTACGGGCCAGCAATACCTGGAG TTCAATGAGGCGCGCAAGACGTCATTCTACTGCCGCCATGGGGAGAAGAT CAAGAACAAGTTCCGCCGCTTTCTGGACCTGCCCGCGGACCTTCGCATCC CAACGCCGACAATGAACATTTTGGCCTATCTGGCGCATGAGACCATTGCC GCCATTGTCGACTATTCGATCCTGACGCGCCTGAACTCGGACAACCGTGC GACCGAGCCCTACAGCCGAGTGACCTCCGCCGGAGGCAGTCCGGCTATGA TGCACGTCTGTCCGGAGGTCACACAGGGTCGCGGCATGGAGGTGGTCAAG CCAATCAGTGTACCGGAGATCCACGAGGCCATGCGCCGTTTCCGGCAAAT GAGCAGCCGTAAGATTGGGCGGTATCGCAACTCTTGCGACATCGATTTCC GGCGCAGTTTTCTAGCCATTTAAGTTTTAATGATCTTAATATCCTCGCCT ATTTTTATTTGCGTCAATTATTGATTTTATTCACAAAAAATAGACTGTAC AATTAATTCATTTAAAGTAATTCAATCCCCAACAATTAACGCGCTCTACA TTTTAATTATACAAATTATAAAATAAAGCAATTTTGGCTCGTTAAAAAAA AAAAAAATTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 7842607..7844003 | 1..1399 | 6855 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12017158..12018556 | 1..1399 | 6995 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 11757989..11759387 | 1..1399 | 6995 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 4406..4443 | 434..471 | 118 | 78.9 | Plus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1736..1844 | 1323..1208 | 111 | 61.2 | Minus |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6564..6727 | 711..868 | 111 | 58.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 7842607..7844003 | 1..1399 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 1..1155 | 69..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 1..1155 | 69..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 1..1155 | 69..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 1..1155 | 69..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 1..1155 | 69..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 1..1223 | 1..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 59..1451 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 3..1395 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 1..1223 | 1..1223 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Spt3-RA | 3..1395 | 1..1393 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12017158..12018556 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12017158..12018556 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12017158..12018556 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 7842880..7844278 | 1..1399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 11757989..11759387 | 1..1399 | 100 | Plus |
Translation from 2 to 1222
> FI01013.hyp RVLSILTKSAVAIEVVTLFVNKMNYNAKRVMRQNSVCVGSNDMAASPIMI GPAPPSAPSTPQLQTTEDIKPLLVQRQVILLQSGSIPTNPSPQQINLAGH NVAGGASGSNVANVLIPDDAPVSLLTEIADIMRSFGDSDQPRTGSVKLVE QILQQQLRGIFNEASLVAMRRKQNPCPSQADFEFLMRNHPVKIARMRKHL KDMRILKRFLSIRTGRPQDFMDDLEQQEEDEELAIDVYELHDEDRMRRLF RADRISQILTGQQYLEFNEARKTSFYCRHGEKIKNKFRRFLDLPADLRIP TPTMNILAYLAHETIAAIVDYSILTRLNSDNRATEPYSRVTSAGGSPAMM HVCPEVTQGRGMEVVKPISVPEIHEAMRRFRQMSSRKIGRYRNSCDIDFR RSFLAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spt3-PA | 384 | CG3169-PA | 1..384 | 23..406 | 1966 | 100 | Plus |
Translation from 68 to 1222
> FI01013.pep MNYNAKRVMRQNSVCVGSNDMAASPIMIGPAPPSAPSTPQLQTTEDIKPL LVQRQVILLQSGSIPTNPSPQQINLAGHNVAGGASGSNVANVLIPDDAPV SLLTEIADIMRSFGDSDQPRTGSVKLVEQILQQQLRGIFNEASLVAMRRK QNPCPSQADFEFLMRNHPVKIARMRKHLKDMRILKRFLSIRTGRPQDFMD DLEQQEEDEELAIDVYELHDEDRMRRLFRADRISQILTGQQYLEFNEARK TSFYCRHGEKIKNKFRRFLDLPADLRIPTPTMNILAYLAHETIAAIVDYS ILTRLNSDNRATEPYSRVTSAGGSPAMMHVCPEVTQGRGMEVVKPISVPE IHEAMRRFRQMSSRKIGRYRNSCDIDFRRSFLAI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17227-PA | 379 | GF17227-PA | 1..379 | 1..384 | 1809 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18586-PA | 385 | GG18586-PA | 1..385 | 1..384 | 2001 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23557-PA | 381 | GH23557-PA | 1..381 | 1..384 | 1701 | 85 | Plus |
Dgri\GH23654-PA | 103 | GH23654-PA | 1..103 | 282..384 | 506 | 93.2 | Plus |
Dgri\GH23657-PA | 191 | GH23657-PA | 124..191 | 317..384 | 317 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Spt3-PA | 384 | CG3169-PA | 1..384 | 1..384 | 1966 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23555-PA | 381 | GI23555-PA | 1..381 | 1..384 | 1680 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22261-PA | 386 | GL22261-PA | 1..386 | 1..384 | 1640 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16398-PA | 386 | GA16398-PA | 1..386 | 1..384 | 1640 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23995-PA | 384 | GM23995-PA | 1..384 | 1..384 | 2030 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18797-PA | 384 | GD18797-PA | 1..384 | 1..384 | 2029 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23533-PA | 381 | GJ23533-PA | 1..381 | 1..384 | 1668 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13076-PA | 374 | GK13076-PA | 1..374 | 1..384 | 1577 | 84.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26156-PA | 385 | GE26156-PA | 1..385 | 1..384 | 2007 | 97.9 | Plus |