Clone FI01020 Report

Search the DGRC for FI01020

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:10
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCYLD-RD
Protein status:FI01020.pep: gold
Sequenced Size:2068

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CYLD 2008-04-29 Release 5.5 accounting
CYLD 2008-08-15 Release 5.9 accounting
CYLD 2008-12-18 5.12 accounting

Clone Sequence Records

FI01020.complete Sequence

2068 bp (2068 high quality bases) assembled on 2006-09-12

GenBank Submission: BT025222

> FI01020.complete
ATTCTAAAAGACACAAATTTTATAAATACTAAACAAAAATCCAGGATATA
AACACCTTTTTATTTCCTTTAGTTGGAAATAATGAATTCCAAATCCGATT
ATGAAGCAGAAAAAGAAAAAAAGCTGACCATAACAAATAGATTCGGGGAC
TCCCTGGAAAACTATGAACTATCCAACGAGAGCGAGCACAAGACCCATGT
ATACCCGAAAAAGATTCCTAACAGAAAAAACGGAATTTTAAAAAACACCG
ATGCCAACCATAGTGCCGTCGATAATCAACATCTTGAGGATGTGGATTTG
GCAGACATTTTGGGCACAAATTGGCCAAAACGAGCGGGACCAGCTGCAAT
GATCTTAAACAACAAAAGTAAAACGGATCCTAGTAATTCTGTAGACTTAA
TTTTAAAACCAGCCTCACCCATATTAAAAATAGAGCCGGAGGAACCTTTA
CGTTTTACAATCGCTGATTATCAACCTCTGATTGAAATACCTGGAACCGA
GCTAGCGATTGGTTCCCTCGTCGAAGTCTCGAATCCTGGAGTATGTGAAG
ATCTATATGGCGTTGTGAGATGGATAGGTATACCGCCTGGCCCGCAAAAA
AACGTACTCGTCGGAATCGAGGTAGAAGACGAATCCAACTTGAAAAATGT
AGTGGCATCGGATGGGAGACACAATGGCGTACGCTTATTTACTTGCCATG
ATGGTCGAGCTATTTTTGTACCAGCCAACAGATGCACCGCTGACCGGCGA
TTTGCTGATGTAGATAATAGCATTTCTGCAAACAGAGTTTCTAGTAATCA
CGCAAAGAAATTTGGCGTCGCTGACTGTCCTGCCATATATGGCTCGATAC
CACCATTACAAATACACAATTCCGATGAGCTTGCTAGCATATGTGGAAAG
TTCAAAGGAATACAAGGACACCATAATTCCTGCTACCTTGATGCAACTCT
ATTTTCCATGTTCACTTTCACCAGTGTTTTCGATTCAATTCTGTACAGAC
GTCCGGGCCCACAAGATATTCGAAATTACAGTGAGGTTCAAAAGGTTCTG
CGCGATGAGATCGTCAATCCATTGCGAAAAAACGTTTTCGTTCGATCCGA
TCGTGTGATGAAACTGCGCGAGCTCCTAGATCAGCTAAGTTCGGTCAGCG
GTCTCACCTGCGAGGAAAAGGATCCTGAAGAGTTCCTAAATAGTTTGCTC
TCACAAATAATGCGAGTTGAACCGTTTCTAAAGCTAAGCTCGGGGCAAGA
TTCTTATTTTTACCAACTCTTTGTGGAGAAGGATGAGAAGTTAACATTAC
CGAGTGTGCAACAATTGTTTGAGCAAAGCTTTCACTCATCGGATATAAAA
CTAAAGGAGGTTCCTTCTTGTTTCATCATTCAAATGCCTCGTTTCGGAAA
GAACTACAAGATGTATCCAAGGATATTGCCATCGCAGGTTCTTGATGTCA
CAGACATAATTGAAAATTCTCCTCGACAGTGCTCACTTTGTGGCAAACTA
GCTGAATACGAGTGCCGGGATTGCTTTGGCAGCTTGCAGGCTGGATCAGG
ACTGGAATGCACCGCCTTTTGTCCAAAATGTCTCAAGACATTTCACAGTC
ACATCAAAAGAACGAATCATGTGTCGAAGAAGATTTATAGTCCGAAGGAA
TTTAAAATCATGGCCGAGCACATGGTTGTCCCGCGATTGTACATGGAGTT
ATTTGCAGTCGTTTGCATAGAAACATCTCACTACGTGGCATTTGTCAAGT
CTGGATCCGGACCAGATGCTCCATGGTGTTTCTTCGATTCAATGGCTGAT
CGAAAAGGCGAACAGAATGGATACAATATACCTGAAATTACGTGTGTTCC
AGAATTAACACAGTGGCTCTCGGAAGAAGGCGCACGATCTATAAATGAAA
CTTCAACGAACGATAAAGTATTACCTGAACACGCCAAGCGTATTTTTTGC
GATGCCTATATGTGTCTGTACCAAAGCACAGATATAATGATGTACCATTA
GAGCAAATTTATCAATAAATTAAATGAATGCAATAAAATTTTTGTAAAAA
TCAAAAAAAAAAAAAAAA

FI01020.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
CYLD-RE 2090 CYLD-RE 19..2071 1..2053 10265 100 Plus
CYLD-RD 2084 CYLD-RD 81..2069 65..2053 9945 100 Plus
CYLD-RC 2021 CYLD-RC 67..2010 110..2053 9720 100 Plus
CYLD-RD 2084 CYLD-RD 2..66 1..65 325 100 Plus
CYLD-RC 2021 CYLD-RC 2..66 1..65 325 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10294723..10294969 2052..1806 1235 100 Minus
chr2L 23010047 chr2L 10295482..10295718 1468..1232 1185 100 Minus
chr2L 23010047 chr2L 10296562..10296793 683..452 1160 100 Minus
chr2L 23010047 chr2L 10295795..10296017 1233..1011 1100 99.6 Minus
chr2L 23010047 chr2L 10297636..10297854 453..235 1065 99.1 Minus
chr2L 23010047 chr2L 10295027..10295227 1809..1609 1005 100 Minus
chr2L 23010047 chr2L 10296288..10296464 859..683 885 100 Minus
chr2L 23010047 chr2L 10297901..10298077 242..66 885 100 Minus
chr2L 23010047 chr2L 10296072..10296227 1015..860 780 100 Minus
chr2L 23010047 chr2L 10295281..10295422 1610..1469 710 100 Minus
chr2L 23010047 chr2L 10298619..10298683 65..1 325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:04:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10295865..10296112 2053..1806 1240 100 Minus
2L 23513712 2L 10296625..10296861 1468..1232 1185 100 Minus
2L 23513712 2L 10297705..10297936 683..452 1160 100 Minus
2L 23513712 2L 10296938..10297160 1233..1011 1100 99.6 Minus
2L 23513712 2L 10298779..10298997 453..235 1065 99.1 Minus
2L 23513712 2L 10296170..10296370 1809..1609 1005 100 Minus
2L 23513712 2L 10297431..10297607 859..683 885 100 Minus
2L 23513712 2L 10299044..10299220 242..66 885 100 Minus
2L 23513712 2L 10297215..10297370 1015..860 780 100 Minus
2L 23513712 2L 10296424..10296565 1610..1469 710 100 Minus
2L 23513712 2L 10299762..10299826 65..1 325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10295865..10296112 2053..1806 1240 100 Minus
2L 23513712 2L 10296625..10296861 1468..1232 1185 100 Minus
2L 23513712 2L 10297705..10297936 683..452 1160 100 Minus
2L 23513712 2L 10296938..10297160 1233..1011 1100 99.5 Minus
2L 23513712 2L 10298779..10298997 453..235 1065 99 Minus
2L 23513712 2L 10296170..10296370 1809..1609 1005 100 Minus
2L 23513712 2L 10299044..10299220 242..66 885 100 Minus
2L 23513712 2L 10297431..10297607 859..683 885 100 Minus
2L 23513712 2L 10297215..10297370 1015..860 780 100 Minus
2L 23513712 2L 10296424..10296565 1610..1469 710 100 Minus
2L 23513712 2L 10299762..10299826 65..1 325 100 Minus
Blast to na_te.dros performed 2019-03-15 22:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2700..2798 23..119 129 64.4 Plus

FI01020.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:08:17 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10296288..10296463 684..859 100 <- Minus
chr2L 10296073..10296227 860..1014 100 <- Minus
chr2L 10294723..10294967 1808..2052 100 <- Minus
chr2L 10295029..10295225 1611..1807 100 <- Minus
chr2L 10295281..10295422 1469..1610 100 <- Minus
chr2L 10295482..10295716 1234..1468 100 <- Minus
chr2L 10295795..10296013 1015..1233 100 <- Minus
chr2L 10296562..10296793 452..683 100 <- Minus
chr2L 10297638..10297846 243..451 100 <- Minus
chr2L 10297901..10298077 66..242 100 <- Minus
chr2L 10298619..10298683 1..65 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:34:33 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 1..1920 82..2001 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:20:33 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 1..1920 82..2001 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:09:05 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RD 1..1920 82..2001 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:51:10 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 1..1920 82..2001 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:27 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RD 1..1920 82..2001 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:58:46 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 2..2053 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:20:33 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 2..2053 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:09:05 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 22..2073 1..2052 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:51:10 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 2..2053 1..2052 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:27 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
CYLD-RE 22..2073 1..2052 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:17 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10297216..10297370 860..1014 100 <- Minus
2L 10296625..10296859 1234..1468 100 <- Minus
2L 10296938..10297156 1015..1233 100 <- Minus
2L 10296172..10296368 1611..1807 100 <- Minus
2L 10296424..10296565 1469..1610 100 <- Minus
2L 10295866..10296110 1808..2052 100 <- Minus
2L 10297431..10297606 684..859 100 <- Minus
2L 10297705..10297936 452..683 100 <- Minus
2L 10298781..10298989 243..451 100 <- Minus
2L 10299044..10299220 66..242 100 <- Minus
2L 10299762..10299826 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:17 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10297216..10297370 860..1014 100 <- Minus
2L 10296625..10296859 1234..1468 100 <- Minus
2L 10296938..10297156 1015..1233 100 <- Minus
2L 10296172..10296368 1611..1807 100 <- Minus
2L 10296424..10296565 1469..1610 100 <- Minus
2L 10295866..10296110 1808..2052 100 <- Minus
2L 10297431..10297606 684..859 100 <- Minus
2L 10297705..10297936 452..683 100 <- Minus
2L 10298781..10298989 243..451 100 <- Minus
2L 10299044..10299220 66..242 100 <- Minus
2L 10299762..10299826 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:08:17 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10297216..10297370 860..1014 100 <- Minus
2L 10296625..10296859 1234..1468 100 <- Minus
2L 10296938..10297156 1015..1233 100 <- Minus
2L 10296172..10296368 1611..1807 100 <- Minus
2L 10296424..10296565 1469..1610 100 <- Minus
2L 10295866..10296110 1808..2052 100 <- Minus
2L 10297431..10297606 684..859 100 <- Minus
2L 10297705..10297936 452..683 100 <- Minus
2L 10298781..10298989 243..451 100 <- Minus
2L 10299044..10299220 66..242 100 <- Minus
2L 10299762..10299826 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:09:05 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10297431..10297606 684..859 100 <- Minus
arm_2L 10296625..10296859 1234..1468 100 <- Minus
arm_2L 10296938..10297156 1015..1233 100 <- Minus
arm_2L 10295866..10296110 1808..2052 100 <- Minus
arm_2L 10296172..10296368 1611..1807 100 <- Minus
arm_2L 10296424..10296565 1469..1610 100 <- Minus
arm_2L 10297216..10297370 860..1014 100 <- Minus
arm_2L 10297705..10297936 452..683 100 <- Minus
arm_2L 10298781..10298989 243..451 100 <- Minus
arm_2L 10299044..10299220 66..242 100 <- Minus
arm_2L 10299762..10299826 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:08:58 Download gff for FI01020.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10299044..10299220 66..242 100 <- Minus
2L 10299762..10299826 1..65 100   Minus
2L 10295866..10296110 1808..2052 100 <- Minus
2L 10296172..10296368 1611..1807 100 <- Minus
2L 10296424..10296565 1469..1610 100 <- Minus
2L 10296625..10296859 1234..1468 100 <- Minus
2L 10296938..10297156 1015..1233 100 <- Minus
2L 10297216..10297370 860..1014 100 <- Minus
2L 10297431..10297606 684..859 100 <- Minus
2L 10297705..10297936 452..683 100 <- Minus
2L 10298781..10298989 243..451 100 <- Minus

FI01020.hyp Sequence

Translation from 81 to 2000

> FI01020.hyp
MNSKSDYEAEKEKKLTITNRFGDSLENYELSNESEHKTHVYPKKIPNRKN
GILKNTDANHSAVDNQHLEDVDLADILGTNWPKRAGPAAMILNNKSKTDP
SNSVDLILKPASPILKIEPEEPLRFTIADYQPLIEIPGTELAIGSLVEVS
NPGVCEDLYGVVRWIGIPPGPQKNVLVGIEVEDESNLKNVVASDGRHNGV
RLFTCHDGRAIFVPANRCTADRRFADVDNSISANRVSSNHAKKFGVADCP
AIYGSIPPLQIHNSDELASICGKFKGIQGHHNSCYLDATLFSMFTFTSVF
DSILYRRPGPQDIRNYSEVQKVLRDEIVNPLRKNVFVRSDRVMKLRELLD
QLSSVSGLTCEEKDPEEFLNSLLSQIMRVEPFLKLSSGQDSYFYQLFVEK
DEKLTLPSVQQLFEQSFHSSDIKLKEVPSCFIIQMPRFGKNYKMYPRILP
SQVLDVTDIIENSPRQCSLCGKLAEYECRDCFGSLQAGSGLECTAFCPKC
LKTFHSHIKRTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSH
YVAFVKSGSGPDAPWCFFDSMADRKGEQNGYNIPEITCVPELTQWLSEEG
ARSINETSTNDKVLPEHAKRIFCDAYMCLYQSTDIMMYH*

FI01020.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
CYLD-PE 639 CG5603-PE 1..639 1..639 3380 100 Plus
CYLD-PD 639 CG5603-PD 1..639 1..639 3380 100 Plus
CYLD-PB 551 CG5603-PB 10..551 96..639 2746 96.7 Plus

FI01020.pep Sequence

Translation from 81 to 2000

> FI01020.pep
MNSKSDYEAEKEKKLTITNRFGDSLENYELSNESEHKTHVYPKKIPNRKN
GILKNTDANHSAVDNQHLEDVDLADILGTNWPKRAGPAAMILNNKSKTDP
SNSVDLILKPASPILKIEPEEPLRFTIADYQPLIEIPGTELAIGSLVEVS
NPGVCEDLYGVVRWIGIPPGPQKNVLVGIEVEDESNLKNVVASDGRHNGV
RLFTCHDGRAIFVPANRCTADRRFADVDNSISANRVSSNHAKKFGVADCP
AIYGSIPPLQIHNSDELASICGKFKGIQGHHNSCYLDATLFSMFTFTSVF
DSILYRRPGPQDIRNYSEVQKVLRDEIVNPLRKNVFVRSDRVMKLRELLD
QLSSVSGLTCEEKDPEEFLNSLLSQIMRVEPFLKLSSGQDSYFYQLFVEK
DEKLTLPSVQQLFEQSFHSSDIKLKEVPSCFIIQMPRFGKNYKMYPRILP
SQVLDVTDIIENSPRQCSLCGKLAEYECRDCFGSLQAGSGLECTAFCPKC
LKTFHSHIKRTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSH
YVAFVKSGSGPDAPWCFFDSMADRKGEQNGYNIPEITCVPELTQWLSEEG
ARSINETSTNDKVLPEHAKRIFCDAYMCLYQSTDIMMYH*

FI01020.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14119-PA 642 GF14119-PA 1..642 1..639 2872 82.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23954-PA 640 GG23954-PA 1..640 1..639 3354 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13356-PA 618 GH13356-PA 13..618 49..639 2291 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
CYLD-PE 639 CG5603-PE 1..639 1..639 3380 100 Plus
CYLD-PD 639 CG5603-PD 1..639 1..639 3380 100 Plus
CYLD-PB 551 CG5603-PB 10..551 96..639 2746 96.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18982-PA 551 GL18982-PA 1..551 90..639 2379 79.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27711-PA 520 GA27711-PA 5..520 126..639 2344 83.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11823-PA 639 GM11823-PA 1..639 1..639 3411 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22283-PA 639 GD22283-PA 1..639 1..639 3411 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17519-PA 679 GJ17519-PA 19..679 5..639 2236 64.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18789-PA 577 GK18789-PA 1..577 63..639 2211 69.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26174-PA 640 GE26174-PA 1..640 1..639 3371 97.5 Plus