Clone FI01109 Report

Search the DGRC for FI01109

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:11
Well:9
Vector:pOT2
Associated Gene/TranscriptAda2a-RC
Protein status:FI01109.pep: gold
Sequenced Size:2146

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Rpb4 2008-04-29 Release 5.5 accounting
Rpb4 2008-08-15 Release 5.9 accounting
Rpb4 2008-12-18 5.12 accounting

Clone Sequence Records

FI01109.complete Sequence

2146 bp (2146 high quality bases) assembled on 2006-09-22

GenBank Submission: BT025205

> FI01109.complete
AAAAACAGCGGCATTTTATTGTGCAAATTAGAATTTCTTAATATAAACTT
TAACAAACTGAGCAGTTCTTAGCTCACTATGTCTTTTATGAACCCCGTGG
ATATGGTGGATGAGGACGCCGCCGACCTGCAGTTTCCCAAAGTTGAGCCA
CTGGGGCCACAGGTTAAGCGGTTCATCCATGCACATCAGAATGAACACAC
CAGGAACTCCATGGTTTTGTATAATCCGCACACGTTGCACAGGTACTTGG
AGGAGATGGAGGAAAAGACGCGGGACCAGAATAGCAGTGTTCCATCGGCT
ACAAAGGATGCCAATCGATGTGCCACATGTCGCTGCAGTCTCACAGAGCC
GTACATTAAGTGCTCCGAGTGCCTCGACACCCTGCTCTGCCTGCAATGTT
TCTCACGTGGAAAGGAGGCCTTTTCTCACCGCAATAACCACGCTTACATC
ATAGTCCGCGACAACATACAGGTGTTCGCCGATGAGCCACACTGGACGGC
ACGGGACGAGCGCATACTGCTGAAAACACTTCGCACCCACGGCTATGGCA
ACTGGGAGGCGGTCTCCCAGGCTCTGGACCAGCGCCACGAACCCGCAGAA
GTGCGACGTCACTACCACGATTGCTACTTTGGCGGGATATTCGAGCGGCT
CCTTAATCTGAAGCATGCGAGGGACAGCTATGTGCCCGAACGAATGCCGT
ATGTCTTCAAAATGCGCAGCTTGGATCCACCACGTCATGACGACATCGCC
TCCATGCAGTTCAGACTGAGCGCAGGCTACCGCTGTGCAAGAGGAGACTT
CGATACTCCGTACGACACCTCAGCAGAGAGTCTGCTATCTATTATGGTGG
ATCATAGGGGCAGGGATGACGACAACGAGGCGTCTGAGAGTGAGTTTGAG
CGCGAAGTGACAGAGGAATTGCAACTCGGACTAGTTCGGGCATACAACAA
TCGCCTCAGAGAGCGCCAGCGTCGTTACAAGATAATGAGGCAACACGGTC
TCATAATGCCCAATCGCACCGTCAGCTGGATTTCCAAGTACGTGCACGCC
TTTGGCAGCGATGCGAGTTGCATGCGTTTCTTGGGCTTCATGCAGATCTG
TCCTGACCCCATTAAGTTCGATATGCTGTTGGAGTCTCTGCGTTATTATC
GGGAGCTGCATAGCCAGCTGCACAAGCTATACGATCTGCGGGAGCACGGC
GTTCGCACTCTTTCCGGAGCAAAACTATATGCCCGCTTGAGCAAAGAACG
TCAGCAGGCTCAGCGAGATTACAGCAGGCTGAAGCAAACAGATGCTTTCG
ACTGGCAGCAATTGGTGCAGCATTACGAGAGCAACAGGAGCGGTGATCCT
GGTCCCCTGGCCATTAACTCAAAGTTATATGTGATGAACACGCGTCGAAA
GGCTAGTCCCATTGAGATTGGAGATCTGCCTGGTTACTCCAAACTGGATG
ATGGCGAGCGAAAGTTGTGCAGTGTGGCTCGTCTGGTTCCGCAGTCGTAC
TTGGACTACAAGAATCAACTCGTTACGGAGCAAGCAAAGCTCGGATATCT
ACGGCTAGCCGATGCGCGACGTCTCATCAAAATTGACGTGAACAAAACGC
GTCAGATTTACGATTTTCTGCTGGAACATGGCCATATCAGCAGACCACCG
TCCTATGGCTAGGGCTAATTTTTTCTCCAATGTTTCACTTAGTTCGAAAA
TGCCGAGACGCTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAA
AGCGACAAAACGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTC
ATGAAGACCTACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGA
GACGATAATGTCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAAT
TCGAACTGGCCGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCC
AAGGCGCTGATTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCG
CCAAATACTCGACGATATCGGCACTAAACGCAGCTTACAATACTAATTAC
TACTACGTATAAATATAGTTTAGATATAAAGTCATGGTCCACTTACACAA
TAAAGTGAAGAACAGCAAGAATTTTAAGTAAAAAAAAAAAAAAAAA

FI01109.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb4-RE 2367 Rpb4-RE 197..1746 141..1690 7540 99 Plus
Rpb4-RA 2395 Rpb4-RA 25..1447 1..1423 6950 99.2 Plus
Rpb4-RB 2427 Rpb4-RB 197..1479 141..1423 6265 99.2 Plus
Rpb4-RB 2427 Rpb4-RB 1877..2318 1691..2132 2150 99 Plus
Rpb4-RE 2367 Rpb4-RE 1817..2258 1691..2132 2150 99 Plus
Rpb4-RA 2395 Rpb4-RA 1845..2286 1691..2132 2150 99 Plus
Rpb4-RB 2427 Rpb4-RB 1538..1806 1422..1690 1285 98.5 Plus
Rpb4-RA 2395 Rpb4-RA 1506..1774 1422..1690 1285 98.5 Plus
Rpb4-RB 2427 Rpb4-RB 12..154 1..143 700 99.3 Plus
Rpb4-RE 2367 Rpb4-RE 12..154 1..143 700 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14078669..14079487 959..141 4005 99.3 Minus
chr3R 27901430 chr3R 14078147..14078613 1423..957 2275 99.1 Minus
chr3R 27901430 chr3R 14077249..14077508 2129..1870 1285 99.6 Minus
chr3R 27901430 chr3R 14077820..14078088 1690..1422 1285 98.5 Minus
chr3R 27901430 chr3R 14077569..14077749 1871..1691 860 98.3 Minus
chr3R 27901430 chr3R 14079611..14079752 142..1 695 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:05:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18254375..18255193 959..141 4005 99.3 Minus
3R 32079331 3R 18253853..18254319 1423..957 2275 99.1 Minus
3R 32079331 3R 18252952..18253214 2132..1870 1300 99.6 Minus
3R 32079331 3R 18253526..18253794 1690..1422 1285 98.5 Minus
3R 32079331 3R 18253275..18253455 1871..1691 860 98.3 Minus
3R 32079331 3R 18255317..18255458 142..1 695 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17995206..17996024 959..141 4005 99.2 Minus
3R 31820162 3R 17994684..17995150 1423..957 2275 99.1 Minus
3R 31820162 3R 17993783..17994045 2132..1870 1300 99.6 Minus
3R 31820162 3R 17994357..17994625 1690..1422 1285 98.5 Minus
3R 31820162 3R 17994106..17994286 1871..1691 860 98.3 Minus
3R 31820162 3R 17996148..17996289 142..1 695 99.2 Minus
Blast to na_te.dros performed on 2019-03-16 16:30:15 has no hits.

FI01109.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:30:54 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14077249..14077506 1872..2129 99 <- Minus
chr3R 14077569..14077749 1691..1871 98 <- Minus
chr3R 14077820..14078086 1424..1690 98 <- Minus
chr3R 14078147..14078610 960..1423 99 <- Minus
chr3R 14078669..14079485 143..959 99 <- Minus
chr3R 14079611..14079752 1..142 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:35:18 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RE 1..63 79..142 98 -> Plus
Rpb4-RE 110..1629 143..1662 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:20:04 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RE 1..63 79..142 98 -> Plus
Rpb4-RE 110..1629 143..1662 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:14:57 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Ada2a-RC 1..1584 79..1662 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:45:27 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RE 1..63 79..142 98 -> Plus
Rpb4-RE 110..1629 143..1662 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:31:00 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Ada2a-RC 1..1584 79..1662 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:54:08 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RE 7..147 1..142 98 -> Plus
Rpb4-RE 194..1741 143..1690 99 -> Plus
Rpb4-RE 1812..2250 1691..2129 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:20:04 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RE 12..152 1..142 98 -> Plus
Rpb4-RE 199..1746 143..1690 99 -> Plus
Rpb4-RE 1817..2255 1691..2129 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:14:57 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Ada2a-RG 30..2158 1..2129 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:45:27 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb4-RE 7..147 1..142 98 -> Plus
Rpb4-RE 194..1741 143..1690 99 -> Plus
Rpb4-RE 1812..2250 1691..2129 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:31:00 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
Ada2a-RG 30..2158 1..2129 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:54 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18252955..18253212 1872..2129 99 <- Minus
3R 18253275..18253455 1691..1871 98 <- Minus
3R 18253526..18253792 1424..1690 98 <- Minus
3R 18253853..18254316 960..1423 99 <- Minus
3R 18254375..18255191 143..959 99 <- Minus
3R 18255317..18255458 1..142 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:54 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18252955..18253212 1872..2129 99 <- Minus
3R 18253275..18253455 1691..1871 98 <- Minus
3R 18253526..18253792 1424..1690 98 <- Minus
3R 18253853..18254316 960..1423 99 <- Minus
3R 18254375..18255191 143..959 99 <- Minus
3R 18255317..18255458 1..142 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:30:54 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18252955..18253212 1872..2129 99 <- Minus
3R 18253275..18253455 1691..1871 98 <- Minus
3R 18253526..18253792 1424..1690 98 <- Minus
3R 18253853..18254316 960..1423 99 <- Minus
3R 18254375..18255191 143..959 99 <- Minus
3R 18255317..18255458 1..142 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:14:57 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14078997..14079177 1691..1871 98 <- Minus
arm_3R 14078677..14078934 1872..2129 99 <- Minus
arm_3R 14079248..14079514 1424..1690 98 <- Minus
arm_3R 14079575..14080038 960..1423 99 <- Minus
arm_3R 14080097..14080913 143..959 99 <- Minus
arm_3R 14081039..14081180 1..142 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:08:37 Download gff for FI01109.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17993786..17994043 1872..2129 99 <- Minus
3R 17994106..17994286 1691..1871 98 <- Minus
3R 17994357..17994623 1424..1690 98 <- Minus
3R 17994684..17995147 960..1423 99 <- Minus
3R 17995206..17996022 143..959 99 <- Minus
3R 17996148..17996289 1..142 99   Minus

FI01109.pep Sequence

Translation from 78 to 1661

> FI01109.pep
MSFMNPVDMVDEDAADLQFPKVEPLGPQVKRFIHAHQNEHTRNSMVLYNP
HTLHRYLEEMEEKTRDQNSSVPSATKDANRCATCRCSLTEPYIKCSECLD
TLLCLQCFSRGKEAFSHRNNHAYIIVRDNIQVFADEPHWTARDERILLKT
LRTHGYGNWEAVSQALDQRHEPAEVRRHYHDCYFGGIFERLLNLKHARDS
YVPERMPYVFKMRSLDPPRHDDIASMQFRLSAGYRCARGDFDTPYDTSAE
SLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNNRLRERQRRY
KIMRQHGLIMPNRTVSWISKYVHAFGSDASCMRFLGFMQICPDPIKFDML
LESLRYYRELHSQLHKLYDLREHGVRTLSGAKLYARLSKERQQAQRDYSR
LKQTDAFDWQQLVQHYESNRSGDPGPLAINSKLYVMNTRRKASPIEIGDL
PGYSKLDDGERKLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLI
KIDVNKTRQIYDFLLEHGHISRPPSYG*

FI01109.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23150-PA 624 GF23150-PA 1..507 1..508 1995 75 Plus
Dana\GF16168-PA 563 GF16168-PA 13..192 81..254 197 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16585-PA 527 GG16585-PA 1..527 1..527 2665 93.4 Plus
Dere\GG17470-PA 418 GG17470-PA 13..192 81..254 196 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19029-PA 531 GH19029-PA 1..531 1..527 1867 65.5 Plus
Dgri\GH19246-PA 601 GH19246-PA 13..194 81..257 210 27.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ada2a-PG 527 CG43663-PG 1..527 1..527 2810 100 Plus
Ada2a-PC 527 CG43663-PC 1..527 1..527 2810 100 Plus
Ada2a-PE 542 CG43663-PE 1..542 1..527 2784 97.2 Plus
Ada2a-PA 547 CG43663-PA 1..547 1..527 2779 96.3 Plus
Ada2a-PB 562 CG43663-PB 1..562 1..527 2753 93.8 Plus
Ada2b-PC 418 CG9638-PC 13..305 81..379 245 26.3 Plus
Ada2b-PA 418 CG9638-PA 13..305 81..379 245 26.3 Plus
Ada2b-PB 555 CG9638-PB 13..305 81..379 245 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22841-PA 528 GI22841-PA 1..528 1..527 1843 64.4 Plus
Dmoj\GI24281-PA 417 GI24281-PA 13..303 81..378 208 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22027-PA 629 GL22027-PA 1..512 1..508 1902 70.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30250-PA 531 GA30250-PA 1..531 1..527 2018 72 Plus
Dpse\GA21933-PB 418 GA21933-PB 13..192 81..254 203 28.1 Plus
Dpse\GA21933-PA 573 GA21933-PA 13..192 81..254 202 28.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15312-PA 527 GM15312-PA 1..527 1..527 2716 95.1 Plus
Dsec\GM26364-PA 555 GM26364-PA 13..192 81..254 194 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20190-PA 782 GD20190-PA 1..508 1..508 2655 95.5 Plus
Dsim\GD20190-PA 782 GD20190-PA 570..665 413..508 500 97.9 Plus
Dsim\GD20886-PA 421 GD20886-PA 13..192 81..254 191 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24700-PA 527 GJ24700-PA 1..527 1..527 1942 67.5 Plus
Dvir\GJ23060-PA 579 GJ23060-PA 13..394 81..476 213 26.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22782-PA 529 GK22782-PA 1..529 1..527 1864 64.4 Plus
Dwil\GK14452-PA 561 GK14452-PA 13..192 81..254 192 27.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25222-PA 543 GE25222-PA 1..543 1..527 2544 88.8 Plus
Dyak\GE24869-PA 557 GE24869-PA 13..192 81..254 200 29.3 Plus

FI01109.hyp Sequence

Translation from 78 to 1661

> FI01109.hyp
MSFMNPVDMVDEDAADLQFPKVEPLGPQVKRFIHAHQNEHTRNSMVLYNP
HTLHRYLEEMEEKTRDQNSSVPSATKDANRCATCRCSLTEPYIKCSECLD
TLLCLQCFSRGKEAFSHRNNHAYIIVRDNIQVFADEPHWTARDERILLKT
LRTHGYGNWEAVSQALDQRHEPAEVRRHYHDCYFGGIFERLLNLKHARDS
YVPERMPYVFKMRSLDPPRHDDIASMQFRLSAGYRCARGDFDTPYDTSAE
SLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNNRLRERQRRY
KIMRQHGLIMPNRTVSWISKYVHAFGSDASCMRFLGFMQICPDPIKFDML
LESLRYYRELHSQLHKLYDLREHGVRTLSGAKLYARLSKERQQAQRDYSR
LKQTDAFDWQQLVQHYESNRSGDPGPLAINSKLYVMNTRRKASPIEIGDL
PGYSKLDDGERKLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLI
KIDVNKTRQIYDFLLEHGHISRPPSYG*

FI01109.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ada2a-PG 527 CG43663-PG 1..527 1..527 2810 100 Plus
Ada2a-PC 527 CG43663-PC 1..527 1..527 2810 100 Plus
Ada2a-PE 542 CG43663-PE 1..542 1..527 2784 97.2 Plus
Ada2a-PA 547 CG43663-PA 1..547 1..527 2779 96.3 Plus
Ada2a-PB 562 CG43663-PB 1..562 1..527 2753 93.8 Plus