BDGP Sequence Production Resources |
Search the DGRC for FI01109
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 11 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | Ada2a-RC |
Protein status: | FI01109.pep: gold |
Sequenced Size: | 2146 |
Gene | Date | Evidence |
---|---|---|
Rpb4 | 2008-04-29 | Release 5.5 accounting |
Rpb4 | 2008-08-15 | Release 5.9 accounting |
Rpb4 | 2008-12-18 | 5.12 accounting |
2146 bp (2146 high quality bases) assembled on 2006-09-22
GenBank Submission: BT025205
> FI01109.complete AAAAACAGCGGCATTTTATTGTGCAAATTAGAATTTCTTAATATAAACTT TAACAAACTGAGCAGTTCTTAGCTCACTATGTCTTTTATGAACCCCGTGG ATATGGTGGATGAGGACGCCGCCGACCTGCAGTTTCCCAAAGTTGAGCCA CTGGGGCCACAGGTTAAGCGGTTCATCCATGCACATCAGAATGAACACAC CAGGAACTCCATGGTTTTGTATAATCCGCACACGTTGCACAGGTACTTGG AGGAGATGGAGGAAAAGACGCGGGACCAGAATAGCAGTGTTCCATCGGCT ACAAAGGATGCCAATCGATGTGCCACATGTCGCTGCAGTCTCACAGAGCC GTACATTAAGTGCTCCGAGTGCCTCGACACCCTGCTCTGCCTGCAATGTT TCTCACGTGGAAAGGAGGCCTTTTCTCACCGCAATAACCACGCTTACATC ATAGTCCGCGACAACATACAGGTGTTCGCCGATGAGCCACACTGGACGGC ACGGGACGAGCGCATACTGCTGAAAACACTTCGCACCCACGGCTATGGCA ACTGGGAGGCGGTCTCCCAGGCTCTGGACCAGCGCCACGAACCCGCAGAA GTGCGACGTCACTACCACGATTGCTACTTTGGCGGGATATTCGAGCGGCT CCTTAATCTGAAGCATGCGAGGGACAGCTATGTGCCCGAACGAATGCCGT ATGTCTTCAAAATGCGCAGCTTGGATCCACCACGTCATGACGACATCGCC TCCATGCAGTTCAGACTGAGCGCAGGCTACCGCTGTGCAAGAGGAGACTT CGATACTCCGTACGACACCTCAGCAGAGAGTCTGCTATCTATTATGGTGG ATCATAGGGGCAGGGATGACGACAACGAGGCGTCTGAGAGTGAGTTTGAG CGCGAAGTGACAGAGGAATTGCAACTCGGACTAGTTCGGGCATACAACAA TCGCCTCAGAGAGCGCCAGCGTCGTTACAAGATAATGAGGCAACACGGTC TCATAATGCCCAATCGCACCGTCAGCTGGATTTCCAAGTACGTGCACGCC TTTGGCAGCGATGCGAGTTGCATGCGTTTCTTGGGCTTCATGCAGATCTG TCCTGACCCCATTAAGTTCGATATGCTGTTGGAGTCTCTGCGTTATTATC GGGAGCTGCATAGCCAGCTGCACAAGCTATACGATCTGCGGGAGCACGGC GTTCGCACTCTTTCCGGAGCAAAACTATATGCCCGCTTGAGCAAAGAACG TCAGCAGGCTCAGCGAGATTACAGCAGGCTGAAGCAAACAGATGCTTTCG ACTGGCAGCAATTGGTGCAGCATTACGAGAGCAACAGGAGCGGTGATCCT GGTCCCCTGGCCATTAACTCAAAGTTATATGTGATGAACACGCGTCGAAA GGCTAGTCCCATTGAGATTGGAGATCTGCCTGGTTACTCCAAACTGGATG ATGGCGAGCGAAAGTTGTGCAGTGTGGCTCGTCTGGTTCCGCAGTCGTAC TTGGACTACAAGAATCAACTCGTTACGGAGCAAGCAAAGCTCGGATATCT ACGGCTAGCCGATGCGCGACGTCTCATCAAAATTGACGTGAACAAAACGC GTCAGATTTACGATTTTCTGCTGGAACATGGCCATATCAGCAGACCACCG TCCTATGGCTAGGGCTAATTTTTTCTCCAATGTTTCACTTAGTTCGAAAA TGCCGAGACGCTGCTGATATCGGAGGTGCACATGCTTCTCGATCACCGAA AGCGACAAAACGAATCCGCCGACGAGGAGCAAGAGTTCTCCGAGGTCTTC ATGAAGACCTACGCCTACACAGATAGTTTTCGAAAGTTCAAAAACAAGGA GACGATAATGTCTGCGCGAAGCTTGCTGATGCAGAAAAAGCTGCACAAAT TCGAACTGGCCGCACTGGGTAATTTGTGTCCGGAGGCGCCCGAGGAGGCC AAGGCGCTGATTCCTTCACTAGAGGGTCGCTTCGAGGATGAGGAGCTGCG CCAAATACTCGACGATATCGGCACTAAACGCAGCTTACAATACTAATTAC TACTACGTATAAATATAGTTTAGATATAAAGTCATGGTCCACTTACACAA TAAAGTGAAGAACAGCAAGAATTTTAAGTAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rpb4-RE | 2367 | Rpb4-RE | 197..1746 | 141..1690 | 7540 | 99 | Plus |
Rpb4-RA | 2395 | Rpb4-RA | 25..1447 | 1..1423 | 6950 | 99.2 | Plus |
Rpb4-RB | 2427 | Rpb4-RB | 197..1479 | 141..1423 | 6265 | 99.2 | Plus |
Rpb4-RB | 2427 | Rpb4-RB | 1877..2318 | 1691..2132 | 2150 | 99 | Plus |
Rpb4-RE | 2367 | Rpb4-RE | 1817..2258 | 1691..2132 | 2150 | 99 | Plus |
Rpb4-RA | 2395 | Rpb4-RA | 1845..2286 | 1691..2132 | 2150 | 99 | Plus |
Rpb4-RB | 2427 | Rpb4-RB | 1538..1806 | 1422..1690 | 1285 | 98.5 | Plus |
Rpb4-RA | 2395 | Rpb4-RA | 1506..1774 | 1422..1690 | 1285 | 98.5 | Plus |
Rpb4-RB | 2427 | Rpb4-RB | 12..154 | 1..143 | 700 | 99.3 | Plus |
Rpb4-RE | 2367 | Rpb4-RE | 12..154 | 1..143 | 700 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14078669..14079487 | 959..141 | 4005 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 14078147..14078613 | 1423..957 | 2275 | 99.1 | Minus |
chr3R | 27901430 | chr3R | 14077249..14077508 | 2129..1870 | 1285 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 14077820..14078088 | 1690..1422 | 1285 | 98.5 | Minus |
chr3R | 27901430 | chr3R | 14077569..14077749 | 1871..1691 | 860 | 98.3 | Minus |
chr3R | 27901430 | chr3R | 14079611..14079752 | 142..1 | 695 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18254375..18255193 | 959..141 | 4005 | 99.3 | Minus |
3R | 32079331 | 3R | 18253853..18254319 | 1423..957 | 2275 | 99.1 | Minus |
3R | 32079331 | 3R | 18252952..18253214 | 2132..1870 | 1300 | 99.6 | Minus |
3R | 32079331 | 3R | 18253526..18253794 | 1690..1422 | 1285 | 98.5 | Minus |
3R | 32079331 | 3R | 18253275..18253455 | 1871..1691 | 860 | 98.3 | Minus |
3R | 32079331 | 3R | 18255317..18255458 | 142..1 | 695 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17995206..17996024 | 959..141 | 4005 | 99.2 | Minus |
3R | 31820162 | 3R | 17994684..17995150 | 1423..957 | 2275 | 99.1 | Minus |
3R | 31820162 | 3R | 17993783..17994045 | 2132..1870 | 1300 | 99.6 | Minus |
3R | 31820162 | 3R | 17994357..17994625 | 1690..1422 | 1285 | 98.5 | Minus |
3R | 31820162 | 3R | 17994106..17994286 | 1871..1691 | 860 | 98.3 | Minus |
3R | 31820162 | 3R | 17996148..17996289 | 142..1 | 695 | 99.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14077249..14077506 | 1872..2129 | 99 | <- | Minus |
chr3R | 14077569..14077749 | 1691..1871 | 98 | <- | Minus |
chr3R | 14077820..14078086 | 1424..1690 | 98 | <- | Minus |
chr3R | 14078147..14078610 | 960..1423 | 99 | <- | Minus |
chr3R | 14078669..14079485 | 143..959 | 99 | <- | Minus |
chr3R | 14079611..14079752 | 1..142 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpb4-RE | 1..63 | 79..142 | 98 | -> | Plus |
Rpb4-RE | 110..1629 | 143..1662 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpb4-RE | 1..63 | 79..142 | 98 | -> | Plus |
Rpb4-RE | 110..1629 | 143..1662 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada2a-RC | 1..1584 | 79..1662 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpb4-RE | 1..63 | 79..142 | 98 | -> | Plus |
Rpb4-RE | 110..1629 | 143..1662 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada2a-RC | 1..1584 | 79..1662 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpb4-RE | 7..147 | 1..142 | 98 | -> | Plus |
Rpb4-RE | 194..1741 | 143..1690 | 99 | -> | Plus |
Rpb4-RE | 1812..2250 | 1691..2129 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpb4-RE | 12..152 | 1..142 | 98 | -> | Plus |
Rpb4-RE | 199..1746 | 143..1690 | 99 | -> | Plus |
Rpb4-RE | 1817..2255 | 1691..2129 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada2a-RG | 30..2158 | 1..2129 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rpb4-RE | 7..147 | 1..142 | 98 | -> | Plus |
Rpb4-RE | 194..1741 | 143..1690 | 99 | -> | Plus |
Rpb4-RE | 1812..2250 | 1691..2129 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ada2a-RG | 30..2158 | 1..2129 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18252955..18253212 | 1872..2129 | 99 | <- | Minus |
3R | 18253275..18253455 | 1691..1871 | 98 | <- | Minus |
3R | 18253526..18253792 | 1424..1690 | 98 | <- | Minus |
3R | 18253853..18254316 | 960..1423 | 99 | <- | Minus |
3R | 18254375..18255191 | 143..959 | 99 | <- | Minus |
3R | 18255317..18255458 | 1..142 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18252955..18253212 | 1872..2129 | 99 | <- | Minus |
3R | 18253275..18253455 | 1691..1871 | 98 | <- | Minus |
3R | 18253526..18253792 | 1424..1690 | 98 | <- | Minus |
3R | 18253853..18254316 | 960..1423 | 99 | <- | Minus |
3R | 18254375..18255191 | 143..959 | 99 | <- | Minus |
3R | 18255317..18255458 | 1..142 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18252955..18253212 | 1872..2129 | 99 | <- | Minus |
3R | 18253275..18253455 | 1691..1871 | 98 | <- | Minus |
3R | 18253526..18253792 | 1424..1690 | 98 | <- | Minus |
3R | 18253853..18254316 | 960..1423 | 99 | <- | Minus |
3R | 18254375..18255191 | 143..959 | 99 | <- | Minus |
3R | 18255317..18255458 | 1..142 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14078997..14079177 | 1691..1871 | 98 | <- | Minus |
arm_3R | 14078677..14078934 | 1872..2129 | 99 | <- | Minus |
arm_3R | 14079248..14079514 | 1424..1690 | 98 | <- | Minus |
arm_3R | 14079575..14080038 | 960..1423 | 99 | <- | Minus |
arm_3R | 14080097..14080913 | 143..959 | 99 | <- | Minus |
arm_3R | 14081039..14081180 | 1..142 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17993786..17994043 | 1872..2129 | 99 | <- | Minus |
3R | 17994106..17994286 | 1691..1871 | 98 | <- | Minus |
3R | 17994357..17994623 | 1424..1690 | 98 | <- | Minus |
3R | 17994684..17995147 | 960..1423 | 99 | <- | Minus |
3R | 17995206..17996022 | 143..959 | 99 | <- | Minus |
3R | 17996148..17996289 | 1..142 | 99 | Minus |
Translation from 78 to 1661
> FI01109.pep MSFMNPVDMVDEDAADLQFPKVEPLGPQVKRFIHAHQNEHTRNSMVLYNP HTLHRYLEEMEEKTRDQNSSVPSATKDANRCATCRCSLTEPYIKCSECLD TLLCLQCFSRGKEAFSHRNNHAYIIVRDNIQVFADEPHWTARDERILLKT LRTHGYGNWEAVSQALDQRHEPAEVRRHYHDCYFGGIFERLLNLKHARDS YVPERMPYVFKMRSLDPPRHDDIASMQFRLSAGYRCARGDFDTPYDTSAE SLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNNRLRERQRRY KIMRQHGLIMPNRTVSWISKYVHAFGSDASCMRFLGFMQICPDPIKFDML LESLRYYRELHSQLHKLYDLREHGVRTLSGAKLYARLSKERQQAQRDYSR LKQTDAFDWQQLVQHYESNRSGDPGPLAINSKLYVMNTRRKASPIEIGDL PGYSKLDDGERKLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLI KIDVNKTRQIYDFLLEHGHISRPPSYG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23150-PA | 624 | GF23150-PA | 1..507 | 1..508 | 1995 | 75 | Plus |
Dana\GF16168-PA | 563 | GF16168-PA | 13..192 | 81..254 | 197 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16585-PA | 527 | GG16585-PA | 1..527 | 1..527 | 2665 | 93.4 | Plus |
Dere\GG17470-PA | 418 | GG17470-PA | 13..192 | 81..254 | 196 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19029-PA | 531 | GH19029-PA | 1..531 | 1..527 | 1867 | 65.5 | Plus |
Dgri\GH19246-PA | 601 | GH19246-PA | 13..194 | 81..257 | 210 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ada2a-PG | 527 | CG43663-PG | 1..527 | 1..527 | 2810 | 100 | Plus |
Ada2a-PC | 527 | CG43663-PC | 1..527 | 1..527 | 2810 | 100 | Plus |
Ada2a-PE | 542 | CG43663-PE | 1..542 | 1..527 | 2784 | 97.2 | Plus |
Ada2a-PA | 547 | CG43663-PA | 1..547 | 1..527 | 2779 | 96.3 | Plus |
Ada2a-PB | 562 | CG43663-PB | 1..562 | 1..527 | 2753 | 93.8 | Plus |
Ada2b-PC | 418 | CG9638-PC | 13..305 | 81..379 | 245 | 26.3 | Plus |
Ada2b-PA | 418 | CG9638-PA | 13..305 | 81..379 | 245 | 26.3 | Plus |
Ada2b-PB | 555 | CG9638-PB | 13..305 | 81..379 | 245 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22841-PA | 528 | GI22841-PA | 1..528 | 1..527 | 1843 | 64.4 | Plus |
Dmoj\GI24281-PA | 417 | GI24281-PA | 13..303 | 81..378 | 208 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22027-PA | 629 | GL22027-PA | 1..512 | 1..508 | 1902 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30250-PA | 531 | GA30250-PA | 1..531 | 1..527 | 2018 | 72 | Plus |
Dpse\GA21933-PB | 418 | GA21933-PB | 13..192 | 81..254 | 203 | 28.1 | Plus |
Dpse\GA21933-PA | 573 | GA21933-PA | 13..192 | 81..254 | 202 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15312-PA | 527 | GM15312-PA | 1..527 | 1..527 | 2716 | 95.1 | Plus |
Dsec\GM26364-PA | 555 | GM26364-PA | 13..192 | 81..254 | 194 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20190-PA | 782 | GD20190-PA | 1..508 | 1..508 | 2655 | 95.5 | Plus |
Dsim\GD20190-PA | 782 | GD20190-PA | 570..665 | 413..508 | 500 | 97.9 | Plus |
Dsim\GD20886-PA | 421 | GD20886-PA | 13..192 | 81..254 | 191 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24700-PA | 527 | GJ24700-PA | 1..527 | 1..527 | 1942 | 67.5 | Plus |
Dvir\GJ23060-PA | 579 | GJ23060-PA | 13..394 | 81..476 | 213 | 26.1 | Plus |
Translation from 78 to 1661
> FI01109.hyp MSFMNPVDMVDEDAADLQFPKVEPLGPQVKRFIHAHQNEHTRNSMVLYNP HTLHRYLEEMEEKTRDQNSSVPSATKDANRCATCRCSLTEPYIKCSECLD TLLCLQCFSRGKEAFSHRNNHAYIIVRDNIQVFADEPHWTARDERILLKT LRTHGYGNWEAVSQALDQRHEPAEVRRHYHDCYFGGIFERLLNLKHARDS YVPERMPYVFKMRSLDPPRHDDIASMQFRLSAGYRCARGDFDTPYDTSAE SLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNNRLRERQRRY KIMRQHGLIMPNRTVSWISKYVHAFGSDASCMRFLGFMQICPDPIKFDML LESLRYYRELHSQLHKLYDLREHGVRTLSGAKLYARLSKERQQAQRDYSR LKQTDAFDWQQLVQHYESNRSGDPGPLAINSKLYVMNTRRKASPIEIGDL PGYSKLDDGERKLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLI KIDVNKTRQIYDFLLEHGHISRPPSYG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ada2a-PG | 527 | CG43663-PG | 1..527 | 1..527 | 2810 | 100 | Plus |
Ada2a-PC | 527 | CG43663-PC | 1..527 | 1..527 | 2810 | 100 | Plus |
Ada2a-PE | 542 | CG43663-PE | 1..542 | 1..527 | 2784 | 97.2 | Plus |
Ada2a-PA | 547 | CG43663-PA | 1..547 | 1..527 | 2779 | 96.3 | Plus |
Ada2a-PB | 562 | CG43663-PB | 1..562 | 1..527 | 2753 | 93.8 | Plus |