Clone FI01403 Report

Search the DGRC for FI01403

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:14
Well:3
Vector:pFlc-1
Associated Gene/TranscriptLcp65Ag3-RA
Protein status:FI01403.pep: gold
Sequenced Size:556

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Lcp65Ag3 2008-04-29 Release 5.5 accounting
Lcp65Ag3 2008-08-15 Release 5.9 accounting
Lcp65Ag3 2008-12-18 5.12 accounting

Clone Sequence Records

FI01403.complete Sequence

556 bp assembled on 2007-09-04

GenBank Submission: BT030765

> FI01403.complete
ACCATTCGACTTGAACTGTTCGATAGCCGCAGATCTAAGCACCAAACAAC
AATCACCATGAAATTCCTGATTGTCTTCGTCGCCCTCTTCGCCGTGGCTC
TGGCTGCTCCTGCCGCTGAGGAACCCACAATCGTGCGCTCTGAATCCGAC
GTTGGACCCGAAAGCTTCAAATACGACTGGGAAACCTCCGATGGACAGGC
TGCTCAAGCTGTAGGTCAGCTGAACGACATTGGAACTGAGAACGAGGCTA
TCTCTGTGAGTGGATCCTACCGCTTCATTGCTGATGATGGCCAGACCTAC
CAAGTCAACTACATCGCCGATAAGAACGGATTCCAGCCCGAGGGTGCTCA
TCTGCCCGTTGCCCCCGTGGCATAAGTGAAGTTGCTTTCACTGTAAGCAG
CTTTAAACCCACCAATTCTGCAACACTCTTTGTTATCTTCCCCAACACTT
ACCTACTTTCGGTTTTCCCTTTTAAAAGGGAAAGAATCCTAAGTTACAGA
ACGCAGTTTGTTGAATATTAAAAAATGTAGATTTTATACGAAAAAAAAAA
AAAAAA

FI01403.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag3-RA 798 Lcp65Ag3-RA 60..601 1..542 2695 99.8 Plus
Lcp65Ag1-RA 783 Lcp65Ag1-RA 141..515 3..377 1815 98.9 Plus
Lcp65Ag2-RA 757 Lcp65Ag2-RA 80..488 3..411 1790 95.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6122946..6123307 538..177 1810 100 Minus
chr3L 24539361 chr3L 6125675..6125909 411..177 1025 95.7 Minus
chr3L 24539361 chr3L 6127388..6127588 377..177 930 97.5 Minus
chr3L 24539361 chr3L 6123369..6123544 176..1 880 100 Minus
chr3L 24539361 chr3L 6127650..6127823 176..3 825 98.3 Minus
chr3L 24539361 chr3L 6125971..6126144 176..3 765 96 Minus
chr3L 24539361 chr3L 6130276..6130377 363..262 390 92.2 Minus
chr3L 24539361 chr3L 6140106..6140202 381..285 320 88.7 Minus
chr3L 24539361 chr3L 6142977..6143073 381..285 320 88.7 Minus
chr3L 24539361 chr3L 6137743..6137838 262..357 300 87.5 Plus
chr3L 24539361 chr3L 6128928..6129015 370..283 230 84.1 Minus
chr3L 24539361 chr3L 6129242..6129294 99..47 205 92.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:05:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6130384..6130749 542..177 1815 99.7 Minus
3L 28110227 3L 6133118..6133352 411..177 1025 95.7 Minus
3L 28110227 3L 6134833..6135033 377..177 990 99.5 Minus
3L 28110227 3L 6130811..6130986 176..1 880 100 Minus
3L 28110227 3L 6135095..6135268 176..3 825 98.3 Minus
3L 28110227 3L 6133414..6133587 176..3 765 96 Minus
3L 28110227 3L 6137725..6137826 363..262 390 92.2 Minus
3L 28110227 3L 6150428..6150524 381..285 320 88.7 Minus
3L 28110227 3L 6147557..6147653 381..285 320 88.7 Minus
3L 28110227 3L 6145194..6145289 262..357 300 87.5 Plus
3L 28110227 3L 6136385..6136555 370..200 255 76.6 Minus
3L 28110227 3L 6136699..6136751 99..47 205 92.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6123484..6123849 542..177 1815 99.7 Minus
3L 28103327 3L 6126218..6126452 411..177 1025 95.7 Minus
3L 28103327 3L 6127933..6128133 377..177 990 99.5 Minus
3L 28103327 3L 6123911..6124086 176..1 880 100 Minus
3L 28103327 3L 6128195..6128368 176..3 825 98.2 Minus
3L 28103327 3L 6126514..6126687 176..3 765 95.9 Minus
3L 28103327 3L 6130825..6130926 363..262 390 92.1 Minus
3L 28103327 3L 6143528..6143624 381..285 320 88.6 Minus
3L 28103327 3L 6140657..6140753 381..285 320 88.6 Minus
3L 28103327 3L 6138294..6138389 262..357 300 87.5 Plus
3L 28103327 3L 6129485..6129572 370..283 245 85.2 Minus
3L 28103327 3L 6129799..6129851 99..47 205 92.4 Minus
3L 28103327 3L 6142692..6142733 57..98 165 92.8 Plus
3L 28103327 3L 6139821..6139862 57..98 165 92.8 Plus
3L 28103327 3L 6142951..6143008 319..376 140 82.7 Plus
3L 28103327 3L 6140080..6140137 319..376 140 82.7 Plus
Blast to na_te.dros performed on 2019-03-16 00:06:35 has no hits.

FI01403.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:07:50 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6123369..6123544 1..176 100   Minus
chr3L 6122944..6123307 177..540 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:36:53 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..318 58..375 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:22:25 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..318 58..375 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:33:48 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..318 58..375 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:42:51 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..318 58..375 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:52 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..318 58..375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:37:07 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..540 1..540 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:22:25 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..540 1..540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:33:48 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 4..543 1..540 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:42:51 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 1..540 1..540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:52 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 4..543 1..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:07:50 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6130811..6130986 1..176 100   Minus
3L 6130386..6130749 177..540 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:07:50 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6130811..6130986 1..176 100   Minus
3L 6130386..6130749 177..540 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:07:50 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6130811..6130986 1..176 100   Minus
3L 6130386..6130749 177..540 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:33:48 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6123911..6124086 1..176 100   Minus
arm_3L 6123486..6123849 177..540 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:54:09 Download gff for FI01403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6123486..6123849 177..540 99 <- Minus
3L 6123911..6124086 1..176 100   Minus

FI01403.hyp Sequence

Translation from 1 to 374

> FI01403.hyp
TIRLELFDSRRSKHQTTITMKFLIVFVALFAVALAAPAAEEPTIVRSESD
VGPESFKYDWETSDGQAAQAVGQLNDIGTENEAISVSGSYRFIADDGQTY
QVNYIADKNGFQPEGAHLPVAPVA*

FI01403.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag3-PA 105 CG18779-PA 1..105 20..124 535 100 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..105 20..124 532 99 Plus
Lcp65Ag2-PA 105 CG10534-PA 1..105 20..124 532 99 Plus
Lcp65Af-PA 100 CG10533-PA 1..99 20..123 348 63.5 Plus
Lcp65Ae-PA 99 CG10529-PA 1..98 20..121 346 66.7 Plus

FI01403.pep Sequence

Translation from 57 to 374

> FI01403.pep
MKFLIVFVALFAVALAAPAAEEPTIVRSESDVGPESFKYDWETSDGQAAQ
AVGQLNDIGTENEAISVSGSYRFIADDGQTYQVNYIADKNGFQPEGAHLP
VAPVA*

FI01403.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10918-PA 105 GF10918-PA 1..105 1..105 375 74.3 Plus
Dana\GF10921-PA 101 GF10921-PA 1..101 1..105 364 66.7 Plus
Dana\GF10923-PA 105 GF10923-PA 1..105 1..105 358 78.1 Plus
Dana\GF23526-PA 115 GF23526-PA 11..115 1..105 332 66.7 Plus
Dana\GF10925-PA 107 GF10925-PA 1..101 1..104 329 71.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14083-PA 105 GG14083-PA 1..105 1..105 361 78.1 Plus
Dere\GG14086-PA 102 GG14086-PA 1..102 1..103 330 74.8 Plus
Dere\GG15327-PA 104 GG15327-PA 1..104 1..105 302 59.4 Plus
Dere\GG15325-PA 108 GG15325-PA 1..104 1..100 292 54.8 Plus
Dere\GG15326-PA 109 GG15326-PA 21..108 17..105 284 62.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15650-PA 101 GH15650-PA 1..97 1..100 347 69 Plus
Dgri\GH15651-PA 99 GH15651-PA 1..99 1..102 329 62.7 Plus
Dgri\GH15836-PA 110 GH15836-PA 1..104 1..100 308 58.7 Plus
Dgri\GH13967-PA 99 GH13967-PA 1..99 1..102 303 58.8 Plus
Dgri\GH15846-PA 106 GH15846-PA 1..104 1..103 299 66.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag3-PA 105 CG18779-PA 1..105 1..105 535 100 Plus
Lcp65Ag2-PA 105 CG10534-PA 1..105 1..105 532 99 Plus
Lcp65Ag1-PA 105 CG10530-PA 1..105 1..105 532 99 Plus
Lcp65Af-PA 100 CG10533-PA 1..99 1..104 348 63.5 Plus
Lcp65Ae-PA 99 CG10529-PA 1..98 1..102 346 66.7 Plus
Lcp65Ac-PA 109 CG6956-PA 7..107 5..104 328 65.3 Plus
Cpr65Ax2-PB 102 CG18777-PB 1..102 1..105 306 59 Plus
Cpr65Ax2-PA 102 CG18777-PA 1..102 1..105 306 59 Plus
Cpr65Ax1-PA 102 CG34270-PA 1..102 1..105 306 59 Plus
Lcp65Ad-PB 108 CG6955-PB 1..104 1..100 290 54.8 Plus
Lcp65Ad-PA 108 CG6955-PA 1..104 1..100 290 54.8 Plus
Lcp65Ab1-PA 104 CG32400-PA 1..104 1..105 273 54.7 Plus
Lcp65Ab2-PA 104 CG18773-PA 1..104 1..105 273 54.7 Plus
Lcp65Aa-PA 102 CG7287-PA 1..100 1..100 235 43 Plus
Acp65Aa-PA 105 CG10297-PA 2..104 1..100 223 41.7 Plus
Cpr65Av-PA 111 CG32405-PA 15..109 9..100 217 45.3 Plus
Cpr49Af-PB 126 CG8510-PB 1..101 1..103 187 40.4 Plus
Cpr49Af-PA 126 CG8510-PA 1..101 1..103 187 40.4 Plus
Cpr47Ea-PA 135 CG9079-PA 43..122 25..103 176 41.2 Plus
Cpr49Aa-PB 144 CG30045-PB 1..112 1..103 176 35.4 Plus
Cpr49Ab-PA 259 CG30042-PA 161..238 25..103 174 41.8 Plus
Cpr65Az-PA 239 CG12330-PA 112..196 21..103 171 41.2 Plus
Cpr65Aw-PA 117 CG32404-PA 17..104 14..100 165 36.4 Plus
Cpr47Eb-PA 214 CG13224-PA 3..111 2..100 158 35.8 Plus
Cpr11B-PB 195 CG2555-PB 66..150 21..103 157 38.4 Plus
Cpr11B-PA 197 CG2555-PA 66..150 21..103 157 38.4 Plus
Cpr65Aw-PB 86 CG32404-PB 14..73 41..100 152 46.7 Plus
Cpr67Fa1-PA 134 CG7941-PA 3..100 2..103 150 34.9 Plus
Cpr47Ef-PD 601 CG13214-PD 126..215 16..103 150 37.4 Plus
Cpr47Ef-PC 612 CG13214-PC 126..215 16..103 150 37.4 Plus
Cpr78Cc-PA 119 CG7658-PA 6..99 4..103 148 35.6 Plus
Cpr67Fa2-PA 134 CG18349-PA 3..100 2..103 147 34 Plus
Lcp9-PA 92 CG16914-PA 1..88 1..95 142 37.9 Plus
Cpr47Ec-PA 131 CG9077-PA 10..103 4..97 140 37.2 Plus
Cpr49Ag-PA 134 CG8511-PA 31..133 16..103 137 35 Plus
Cpr65Ec-PA 127 CG8634-PA 3..99 2..103 134 36.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12628-PA 104 GI12628-PA 1..104 1..102 374 71.2 Plus
Dmoj\GI12627-PA 112 GI12627-PA 1..112 1..105 365 66.1 Plus
Dmoj\GI12618-PA 110 GI12618-PA 24..109 20..105 282 60.5 Plus
Dmoj\GI12696-PA 100 GI12696-PA 1..100 1..102 273 64.7 Plus
Dmoj\GI12620-PA 104 GI12620-PA 1..102 1..100 259 51 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15521-PA 102 GL15521-PA 1..101 1..102 355 67.6 Plus
Dper\GL15520-PA 104 GL15520-PA 1..104 1..105 314 72.4 Plus
Dper\GL15517-PA 104 GL15517-PA 1..104 1..105 314 72.4 Plus
Dper\GL15516-PA 102 GL15516-PA 1..101 1..102 294 68.6 Plus
Dper\GL15557-PA 109 GL15557-PA 28..108 25..105 282 64.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23852-PA 104 GA23852-PA 1..104 1..105 321 74.3 Plus
Dpse\GA23851-PA 104 GA23851-PA 1..104 1..105 318 73.3 Plus
Dpse\GA23853-PA 102 GA23853-PA 1..101 1..102 291 67.6 Plus
Dpse\GA23850-PA 102 GA23850-PA 1..101 1..102 291 67.6 Plus
Dpse\GA19982-PA 109 GA19982-PA 28..108 25..105 282 64.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13865-PA 101 GM13865-PA 1..101 1..105 361 66.7 Plus
Dsec\GM13866-PA 105 GM13866-PA 1..105 1..105 342 79 Plus
Dsec\GM13868-PA 105 GM13868-PA 1..105 1..105 342 79 Plus
Dsec\GM14760-PA 109 GM14760-PA 21..108 17..105 277 61.8 Plus
Dsec\GM19678-PA 109 GM19678-PA 21..108 17..105 277 61.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13153-PA 105 GD13153-PA 1..105 1..105 361 80 Plus
Dsim\GD14953-PA 101 GD14953-PA 1..101 1..105 357 66.7 Plus
Dsim\GD13150-PA 105 GD13150-PA 1..105 1..105 344 78.1 Plus
Dsim\GD13151-PA 105 GD13151-PA 1..105 1..105 344 78.1 Plus
Dsim\GD13149-PA 67 GD13149-PA 3..67 41..105 284 76.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12749-PA 105 GJ12749-PA 1..105 1..105 334 70.5 Plus
Dvir\GJ12752-PA 103 GJ12752-PA 1..103 1..105 331 73.3 Plus
Dvir\GJ12680-PA 105 GJ12680-PA 1..105 1..105 329 72.4 Plus
Dvir\GJ12681-PA 105 GJ12681-PA 1..105 1..105 329 72.4 Plus
Dvir\GJ12738-PA 110 GJ12738-PA 11..108 4..102 283 54.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16914-PA 104 GK16914-PA 1..102 1..103 400 72.8 Plus
Dwil\GK16916-PA 101 GK16916-PA 1..101 1..102 392 72.5 Plus
Dwil\GK16921-PA 105 GK16921-PA 1..103 1..103 369 66 Plus
Dwil\GK17269-PA 108 GK17269-PA 1..107 1..105 350 64.5 Plus
Dwil\GK16913-PA 102 GK16913-PA 1..102 1..102 329 58.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21545-PA 104 GE21545-PA 1..104 1..105 281 52.8 Plus
Dyak\GE21544-PA 118 GE21544-PA 15..118 1..105 279 52.8 Plus
Dyak\GE20504-PA 104 GE20504-PA 1..104 1..105 273 51.9 Plus
Dyak\GE20505-PA 118 GE20505-PA 15..118 1..105 273 51.9 Plus
Dyak\GE21543-PA 108 GE21543-PA 25..104 21..100 252 55 Plus