Clone FI01404 Report

Search the DGRC for FI01404

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:14
Well:4
Vector:pFlc-1
Associated Gene/Transcriptphr6-4-RA
Protein status:FI01404.pep: gold
Sequenced Size:2174

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
phr6-4 2008-08-15 Release 5.9 accounting
phr6-4 2008-12-18 5.12 accounting

Clone Sequence Records

FI01404.complete Sequence

2174 bp assembled on 2008-08-11

GenBank Submission: BT044074.1

> FI01404.complete
ACTTCGGTATTTTCGAATCGCAAAACAGCTGTTTACACTCGACGGACGAC
TTGAAACATAAATTCTTGAAAGATTTAAAAAAATGTATATACAATATCTT
GCTCAAAACATGTAAAAAGAGCGCAGTGTAAATAAGTTCAGAAAACGTGT
TGGCAGGTTCGTTAGAACGCTCTTGCTTTTGAAATATATTTTCTACGATA
AATCCGCATAGGTACCGTTTGAAATCGGGGACACGTGCCAAAATGGATTC
ACAAAGGTCCACGTTGGTCCACTGGTTCCGTAAAGGACTCCGGTTGCACG
ACAATCCGGCATTATCGCACATTTTTACCGCCGCTAACGCTGCTCCAGGA
AAATACTTTGTTCGCCCGATTTTCATTTTGGATCCAGGAATCCTCGATTG
GATGCAAGTGGGTGCCAATCGATGGCGATTCCTGCAGCAAACGCTGGAGG
ACTTGGATAACCAGCTTCGGAAACTTAATTCCCGTCTGTTTGTGGTGCGC
GGGAAGCCCGCAGAGGTTTTTCCCCGTATTTTTAAGAGTTGGCGCGTGGA
AATGCTAACTTTTGAGACAGATATCGAGCCGTACTCCGTGACCCGGGATG
CTGCCGTGCAGAAGTTGGCCAAGGCAGAGGGTGTGAGAGTGGAAACTCAT
TGCTCCCACACGATTTATAATCCGGAATTAGTAATAGCGAAGAATCTTGG
CAAGGCTCCAATTACCTATCAAAAGTTCCTGGGCATTGTGGAGCAACTAA
AGGTACCTAAAGTTCTAGGGGTTCCTGAAAAGCTTAAAAACATGCCTACA
CCACCCAAAGATGAGGTGGAGCAAAAGGATTCGGCGGCCTATGATTGTCC
TACGATGAAGCAATTAGTAAAACGCCCGGAGGAACTGGGCCCTAATAAGT
TTCCGGGAGGCGAAACAGAGGCACTGCGCCGCATGGAGGAATCCCTAAAG
GATGAAATTTGGGTTGCCCGCTTTGAGAAGCCCAACACGGCACCCAACTC
GCTGGAGCCTAGCACTACCGTACTAAGCCCTTACCTCAAATTTGGATGCC
TTAGTGCCCGACTGTTCAATCAAAAGCTCAAGGAAATTATCAAACGCCAG
CCGAAGCACTCGCAGCCGCCCGTTTCGCTCATTGGACAACTCATGTGGAG
GGAATTTTACTACACAGTGGCGGCTGCGGAACCCAATTTCGATCGAATGT
TGGGCAATGTATACTGCATGCAAATTCCGTGGCAGGAGCATCCAGATCAC
TTGGAGGCCTGGACACACGGACGCACAGGATATCCTTTCATCGACGCCAT
CATGCGTCAGCTGCGCCAGGAGGGTTGGATCCATCATCTGGCCCGGCATG
CAGTGGCATGTTTCTTAACGCGCGGAGACCTCTGGATCAGTTGGGAGGAG
GGACAGCGGGTGTTCGAGCAGCTGCTGCTGGATCAGGACTGGGCACTAAA
CGCTGGCAACTGGATGTGGCTATCTGCGTCCGCTTTCTTTCACCAGTATT
TTCGCGTCTACAGTCCGGTGGCGTTTGGCAAGAAAACGGATCCCCAAGGG
CACTATATCAGGAAGTATGTGCCGGAACTCTCAAAATATCCTGCTGGCTG
TATTTATGAGCCCTGGAAGGCGTCGCTGGTGGATCAGCGGGCATACGGCT
GCGTCCTCGGCACGGATTATCCCCACCGGATTGTTAAACACGAAGTGGTG
CACAAGGAGAACATTAAGAGAATGGGCGCCGCCTACAAAGTAAATCGGGA
GGTGCGCACTGGCAAGGAGGAGGAGTCGTCTTTCGAGGAGAAATCAGAAA
CCTCCACGTCTGGCAAGCGGAAGGTGCGAAGGGCAACCGGAAGTGCCCCT
AAGCGAAAACGTTAAAACCTAAAATTTGTTCGCTACCTTATGTAAAAGGT
AGTTAGATCTACGGAGTGAGCTAATATGAATTAAGGATGGAAGAATTGTT
TTATGTACTATTTTAGGTATAAATCTATAAACTTCTTGATTGTTACCCTA
CCGAAATTTAGGTATAAAACGAGTATGTAGTATTTGTTGGAATTGGAATT
GGAATTGGAATGTTCGAGTTGTCAATAGGTATAAGAGGGTGACAAAAGAA
TATGTTTAAACGCTTGTGTACTTCACATAAAATGCACCAATAAAGATATT
GATACGGCGAAAAAAAAAAAAAAA

FI01404.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
phr6-4-RB 2168 phr6-4-RB 1..2160 1..2160 10785 99.9 Plus
phr6-4-RA 2185 phr6-4-RA 155..2105 210..2160 9740 99.9 Plus
phr6-4-RA 2185 phr6-4-RA 1..158 1..158 790 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20641797..20643039 2159..908 6045 99 Minus
chr2L 23010047 chr2L 20643100..20643890 910..120 3925 99.7 Minus
chr2L 23010047 chr2L 20644106..20644226 121..1 590 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:05:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20643350..20644602 2160..908 6250 99.9 Minus
2L 23513712 2L 20644663..20645453 910..120 3955 100 Minus
2L 23513712 2L 20645669..20645789 121..1 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20643350..20644602 2160..908 6250 99.9 Minus
2L 23513712 2L 20644663..20645453 910..120 3955 100 Minus
2L 23513712 2L 20645669..20645789 121..1 605 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:33:39 has no hits.

FI01404.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:34:52 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20641797..20643037 910..2159 97 <- Minus
chr2L 20643101..20643888 122..909 99 <- Minus
chr2L 20644106..20644226 1..121 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:36:56 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 1..1623 243..1865 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:09:35 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 1..1623 243..1865 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:42 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 1..1623 243..1865 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:11 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RA 1..1623 243..1865 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:39 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 1..1623 243..1865 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:48:52 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 1..2159 1..2159 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:09:35 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 1..2159 1..2159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:42 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 3..2161 1..2159 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:29:35 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 1..2159 1..2159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:39 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
phr6-4-RB 3..2161 1..2159 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:52 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20643351..20644600 910..2159 99 <- Minus
2L 20644664..20645451 122..909 100 <- Minus
2L 20645669..20645789 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:52 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20643351..20644600 910..2159 99 <- Minus
2L 20644664..20645451 122..909 100 <- Minus
2L 20645669..20645789 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:34:52 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20643351..20644600 910..2159 99 <- Minus
2L 20644664..20645451 122..909 100 <- Minus
2L 20645669..20645789 1..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:42 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20643351..20644600 910..2159 99 <- Minus
arm_2L 20644664..20645451 122..909 100 <- Minus
arm_2L 20645669..20645789 1..121 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:29 Download gff for FI01404.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20645669..20645789 1..121 100   Minus
2L 20643351..20644600 910..2159 99 <- Minus
2L 20644664..20645451 122..909 100 <- Minus

FI01404.pep Sequence

Translation from 242 to 1864

> FI01404.pep
MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGI
LDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSW
RVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAK
NLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAY
DCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTA
PNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQL
MWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFI
DAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDW
ALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYP
AGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKV
NREVRTGKEEESSFEEKSETSTSGKRKVRRATGSAPKRKR*

FI01404.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14557-PA 539 GF14557-PA 1..539 1..540 2628 88.3 Plus
Dana\GF16541-PA 542 GF16541-PA 2..509 3..494 870 38.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21562-PA 540 GG21562-PA 1..540 1..540 2718 94.4 Plus
Dere\GG23184-PA 542 GG23184-PA 2..511 3..496 867 38.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10854-PA 538 GH10854-PA 1..535 1..539 2287 78.2 Plus
Dgri\GH17366-PA 539 GH17366-PA 4..511 5..496 839 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
phr6-4-PD 540 CG2488-PD 1..540 1..540 2901 100 Plus
phr6-4-PC 540 CG2488-PC 1..540 1..540 2901 100 Plus
phr6-4-PB 540 CG2488-PB 1..540 1..540 2901 100 Plus
phr6-4-PA 540 CG2488-PA 1..540 1..540 2901 100 Plus
cry-PA 542 CG3772-PA 4..509 5..494 850 37.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19664-PA 532 GI19664-PA 1..532 1..532 2269 75.9 Plus
Dmoj\GI23904-PA 539 GI23904-PA 2..511 3..496 830 38 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19603-PA 303 GL19603-PA 1..303 231..540 1483 86.8 Plus
Dper\GL19602-PA 204 GL19602-PA 1..202 1..202 903 80.7 Plus
Dper\GL12637-PA 540 GL12637-PA 4..511 5..496 851 38.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15376-PA 533 GA15376-PA 1..533 1..540 2543 85.2 Plus
Dpse\GA17677-PA 540 GA17677-PA 4..511 5..496 851 38.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23319-PA 540 GM23319-PA 1..540 1..540 2871 97.8 Plus
Dsec\GM26830-PA 542 GM26830-PA 2..509 3..494 866 38.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21692-PA 540 GD21692-PA 1..540 1..540 2866 97.8 Plus
Dsim\GD19278-PA 542 GD19278-PA 2..509 3..494 858 37.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17431-PA 541 GJ17431-PA 1..541 1..540 2358 78.2 Plus
Dvir\GJ24000-PA 539 GJ24000-PA 4..511 5..496 842 38.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15094-PA 546 GK15094-PA 6..546 5..540 2387 79.1 Plus
Dwil\GK13802-PA 543 GK13802-PA 10..511 9..494 854 38.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12583-PA 540 GE12583-PA 1..540 1..540 2713 94.1 Plus
Dyak\GE25590-PA 542 GE25590-PA 2..509 3..494 865 38.2 Plus

FI01404.hyp Sequence

Translation from 242 to 1864

> FI01404.hyp
MDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGI
LDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSW
RVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAK
NLGKAPITYQKFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAY
DCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTA
PNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQL
MWREFYYTVAAAEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFI
DAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDW
ALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYP
AGCIYEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYKV
NREVRTGKEEESSFEEKSETSTSGKRKVRRATGSAPKRKR*

FI01404.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
phr6-4-PD 540 CG2488-PD 1..540 1..540 2901 100 Plus
phr6-4-PC 540 CG2488-PC 1..540 1..540 2901 100 Plus
phr6-4-PB 540 CG2488-PB 1..540 1..540 2901 100 Plus
phr6-4-PA 540 CG2488-PA 1..540 1..540 2901 100 Plus
cry-PA 542 CG3772-PA 4..509 5..494 850 37.9 Plus