Clone FI01538 Report

Search the DGRC for FI01538

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:15
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCed-12-RA
Protein status:FI01538.pep: gold
Sequenced Size:2597

Clone Sequence Records

FI01538.complete Sequence

2597 bp assembled on 2009-10-19

GenBank Submission: BT100121.1

> FI01538.complete
ACTCCTTGTCAATTGGTCACACTGCACTGAATTAAAAAAAAAAAAGAATA
TAAGTTTACGCAGAAAAACAATAATAATTGCAATTATCGCTAATTGAAAG
AGTGCCAAAATGATACCAAAAAAGACGACGGTTAAGGATTCACACATTGT
GAAAATAGCCGTGGAGCGAGAGGACCATATAGCGCAGTTGATAAATCTGG
ATCAAAGGCATCCGCTGGCAAGTAAAATCCAGGAAATTTGCAATGGTTGG
TCCATCAGCGATCACCAGAACTATGCACTCCAGTTCTACGAGCCCACTAA
CCGAAAGTACGTGACCGAAAAGAATCGCAATGAGATCAAGAATGGCTCCG
TACTGCAGCTGCAGTATTCGCCATCCAAGACTGCCTGCGATGCCATGGAG
GTGCTGCTCAATGGCAGTCCACAGGAGAAGGCGCTGCGTCTAAAGGAGCT
CACTTCCCTAAGCACCGATCACACATTTGCCCTGGAGTTCATCAAGGAGA
AGGGTCTCGACACACTCATTAAGATGATTGAGGATGGCGGCCAGACCAAC
GAAGACATTCTGAAATACAGCCTGGCCAGCTTTGTGGAGCTGATGGAGCA
CGGCACGGTGTCCTGGGAGGTGCCGGAAAACTCATTCGTGGCCCGCAACA
TTGAGATCGTGCGAAACTTTCAGAAATATCCTACGAACTGTGGTGAGAGC
GCCCTGTCCAACTTGGAGAACATTGTTATGTGCAGCAATAAACATGTGCT
TGTTGCCGAGGACATCAAGCTGCAGGATATTCTCCGATTGCTTCAGGATG
TCAATTCGCCGGTGATGCGACAAAATGCCATAGCCCTGCTGAACGCTCTG
TTCGTCAAAGCAGACGAGGGCCGCCGCAGGACCATTGCTCAAACTATTAG
TGCCAAGCAGTTCCGCCTGGCCCTTATCGGCAATGGACTGGGCACAGAGA
TGACCCACCAGCTGTACGTGCTGCAAACGTTGACTCTCGGCCTGTTGGAG
AAGCGCATGCGTATGAAGATGAACGCGCAGGACCAGGACGCGCACGAGAA
GATCAAGGAGCTGCGGCGCATTGCCTTCGACGATAATACCAACGCTTTGA
ATCAAAACGACGATCACATCCGTCGTGGCGGTGGCTCCGGAGCTGGCAAT
GTCAACTTCTCGCAGTACTACAAAAAGCTGGGCTTCAAGTGCGATATTAA
CCCTGCCCAGGATTTCATTGAGACGCCGCCGGGTATATTAGCGTTGGATT
GCATGGTGTATTTTGCACGCAACTACACGCAACAGTATGCGAAGATCGTC
AGGGAGAACTCCTGCCGTGCGGATGAGCACGAGTGTCCCTTCGGACGCAC
CTCCATCGAATTGGTCAAGGTGCTATGTGACATCCTTCGCATCGGCGAGC
CACCAGCCGAGCAATCCGGTGACTTTCAGCCCATGTTCTTTACGCACGAT
TCGCCGTTCGAGGAATTCTTTTGCATATGCGTCATTACGCTGAATCGCAC
ATGGAAGGATATGCGTGCCACTGCCGAGGACTTCAGCACAACCTTCAGCG
TGGTGCGGGAGCAGATCCAGCGCACTCTAAAGGGCAGACCCGAGAACCTG
GACGATTTCCGAAACAAGATCGCTTTGTTGACCTATCAGCAGATCACAAC
ACTGCGCCAGCAGGAGCGCACTTCGAAGGAGGAGTGTGATTCCACAGCTT
CGGCGATTGTTAAGCTCAAAGAGAAGATATCACCGCAAATTCTTGAGCTA
ATCAAGCAGCAACGGCTCTCTTTTCTGGTGGAAGGTACACATTTTGCAAA
ATACTTGCGAGGCACTCGAACAAAGGACAAGTTCTGGTACGCTCGTCTTT
CGCCGAATCACAAGGTGATTCATTACGGAGATTGCGACGAGAAGACAATA
CCCACCATGGAGGAGTTGCCCAAGAAACTGCCCATCAGTGAGATTAAGCA
ATTGCTAGAGGGCAAGGAATGCCCGCATATGAAGGAAACTCGCATTCGGA
AATCGGCGGTAAACCTGGCCTTTTCCATCACCTTCGAAAACATGGAGCAC
TCTACGTTGGACTTTGTGGCACCCGACGAAAGCATATTCAACTACTGGAC
GGATGGAATAAACGCGCTGCTGGGTCAACCGATGGTCAGCAAGCAAAAGA
ACGAGGACTTCGACACTCTGCTGTCGATGGAGATCAAATTGCGCCTGCTG
GACACGGAAGGTGTGGACATCAGCAAGGACCCACCGCCAATACCGGAGGA
TCCCGAAAACTATGATTTTTGCTTTGAGAGCTAAGCATAACGAGCACAAT
TACTTCACGAATTATTCGATTCATTCTAGACTCCCCCATCACCCAAGATA
CATGCCAAAGTGTACACACAACATAATCGTATTCTCCGATCTGATCTTCT
ACTAGTATTACTTGTGCAATTCCCCGAACACAAAATGAACAAACTGGTGG
CGGTCACGTCCAAGTGACTAACCGCTGCCTAGCCATTTAGTGAACTTTAC
ACCATTTATGATTATAATAGGTATATAATATATAGAGATCATTAAATAAC
ACATTTTATACATAACAATTTTGTACAAAAACAAAAAAAAAAAAAAA

FI01538.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ced-12-RA 2605 Ced-12-RA 20..2600 1..2582 12840 99.8 Plus
Patsas-RA 2527 Patsas-RA 2452..2527 2582..2507 380 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12097011..12098033 213..1235 5070 99.7 Plus
chr2L 23010047 chr2L 12098704..12099503 1783..2582 3880 99 Plus
chr2L 23010047 chr2L 12098090..12098647 1232..1789 2775 99.8 Plus
chr2L 23010047 chr2L 12096507..12096728 1..223 1050 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:06:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12098347..12099369 213..1235 5085 99.8 Plus
2L 23513712 2L 12100040..12100839 1783..2582 3985 99.9 Plus
2L 23513712 2L 12099426..12099983 1232..1789 2790 100 Plus
2L 23513712 2L 12097843..12098064 1..223 1050 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12098347..12099369 213..1235 5085 99.8 Plus
2L 23513712 2L 12100040..12100839 1783..2582 3985 99.8 Plus
2L 23513712 2L 12099426..12099983 1232..1789 2790 100 Plus
2L 23513712 2L 12097843..12098064 1..223 1060 99.1 Plus
Blast to na_te.dros performed on 2019-03-15 18:44:17 has no hits.

FI01538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:45:27 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12096507..12096726 1..221 99 -> Plus
chr2L 12097020..12098030 222..1232 99 -> Plus
chr2L 12098091..12098642 1233..1784 99 -> Plus
chr2L 12098706..12099503 1785..2582 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:58:41 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 1..2175 110..2284 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:45:37 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 1..2175 110..2284 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:28:26 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 1..2175 110..2284 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:01 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 1..2175 110..2284 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-19 12:27:00 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 1..2581 1..2582 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:45:36 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 1..2581 1..2582 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:28:26 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 6..2586 1..2582 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:01 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
Ced-12-RA 6..2586 1..2582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:45:27 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12097843..12098062 1..221 99 -> Plus
2L 12098356..12099366 222..1232 100 -> Plus
2L 12099427..12099978 1233..1784 100 -> Plus
2L 12100042..12100839 1785..2582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:45:27 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12097843..12098062 1..221 99 -> Plus
2L 12098356..12099366 222..1232 100 -> Plus
2L 12099427..12099978 1233..1784 100 -> Plus
2L 12100042..12100839 1785..2582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:45:27 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12097843..12098062 1..221 99 -> Plus
2L 12098356..12099366 222..1232 100 -> Plus
2L 12099427..12099978 1233..1784 100 -> Plus
2L 12100042..12100839 1785..2582 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:26 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12097843..12098062 1..221 99 -> Plus
arm_2L 12098356..12099366 222..1232 100 -> Plus
arm_2L 12099427..12099978 1233..1784 100 -> Plus
arm_2L 12100042..12100839 1785..2582 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:25:58 Download gff for FI01538.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12097843..12098062 1..221 99 -> Plus
2L 12098356..12099366 222..1232 100 -> Plus
2L 12099427..12099978 1233..1784 100 -> Plus
2L 12100042..12100839 1785..2582 99   Plus

FI01538.hyp Sequence

Translation from 109 to 2283

> FI01538.hyp
MIPKKTTVKDSHIVKIAVEREDHIAQLINLDQRHPLASKIQEICNGWSIS
DHQNYALQFYEPTNRKYVTEKNRNEIKNGSVLQLQYSPSKTACDAMEVLL
NGSPQEKALRLKELTSLSTDHTFALEFIKEKGLDTLIKMIEDGGQTNEDI
LKYSLASFVELMEHGTVSWEVPENSFVARNIEIVRNFQKYPTNCGESALS
NLENIVMCSNKHVLVAEDIKLQDILRLLQDVNSPVMRQNAIALLNALFVK
ADEGRRRTIAQTISAKQFRLALIGNGLGTEMTHQLYVLQTLTLGLLEKRM
RMKMNAQDQDAHEKIKELRRIAFDDNTNALNQNDDHIRRGGGSGAGNVNF
SQYYKKLGFKCDINPAQDFIETPPGILALDCMVYFARNYTQQYAKIVREN
SCRADEHECPFGRTSIELVKVLCDILRIGEPPAEQSGDFQPMFFTHDSPF
EEFFCICVITLNRTWKDMRATAEDFSTTFSVVREQIQRTLKGRPENLDDF
RNKIALLTYQQITTLRQQERTSKEECDSTASAIVKLKEKISPQILELIKQ
QRLSFLVEGTHFAKYLRGTRTKDKFWYARLSPNHKVIHYGDCDEKTIPTM
EELPKKLPISEIKQLLEGKECPHMKETRIRKSAVNLAFSITFENMEHSTL
DFVAPDESIFNYWTDGINALLGQPMVSKQKNEDFDTLLSMEIKLRLLDTE
GVDISKDPPPIPEDPENYDFCFES*

FI01538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ced-12-PA 724 CG5336-PA 1..724 1..724 3766 100 Plus

FI01538.pep Sequence

Translation from 109 to 2283

> FI01538.pep
MIPKKTTVKDSHIVKIAVEREDHIAQLINLDQRHPLASKIQEICNGWSIS
DHQNYALQFYEPTNRKYVTEKNRNEIKNGSVLQLQYSPSKTACDAMEVLL
NGSPQEKALRLKELTSLSTDHTFALEFIKEKGLDTLIKMIEDGGQTNEDI
LKYSLASFVELMEHGTVSWEVPENSFVARNIEIVRNFQKYPTNCGESALS
NLENIVMCSNKHVLVAEDIKLQDILRLLQDVNSPVMRQNAIALLNALFVK
ADEGRRRTIAQTISAKQFRLALIGNGLGTEMTHQLYVLQTLTLGLLEKRM
RMKMNAQDQDAHEKIKELRRIAFDDNTNALNQNDDHIRRGGGSGAGNVNF
SQYYKKLGFKCDINPAQDFIETPPGILALDCMVYFARNYTQQYAKIVREN
SCRADEHECPFGRTSIELVKVLCDILRIGEPPAEQSGDFQPMFFTHDSPF
EEFFCICVITLNRTWKDMRATAEDFSTTFSVVREQIQRTLKGRPENLDDF
RNKIALLTYQQITTLRQQERTSKEECDSTASAIVKLKEKISPQILELIKQ
QRLSFLVEGTHFAKYLRGTRTKDKFWYARLSPNHKVIHYGDCDEKTIPTM
EELPKKLPISEIKQLLEGKECPHMKETRIRKSAVNLAFSITFENMEHSTL
DFVAPDESIFNYWTDGINALLGQPMVSKQKNEDFDTLLSMEIKLRLLDTE
GVDISKDPPPIPEDPENYDFCFES*

FI01538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21563-PA 723 GF21563-PA 1..723 1..724 3444 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23766-PA 724 GG23766-PA 1..724 1..724 3697 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11577-PA 733 GH11577-PA 1..733 1..724 3232 85 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ced-12-PA 724 CG5336-PA 1..724 1..724 3766 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17067-PA 730 GI17067-PA 1..730 1..724 3337 87.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19238-PA 444 GL19238-PA 1..444 281..724 2271 96.4 Plus
Dper\GL19237-PA 273 GL19237-PA 1..271 1..272 1279 89.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18811-PA 724 GA18811-PA 1..724 1..724 3630 94.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26729-PA 724 GM26729-PA 1..724 1..724 3841 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23817-PA 724 GD23817-PA 1..724 1..724 3829 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17651-PA 727 GJ17651-PA 1..727 1..724 3357 88.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21087-PA 728 GK21087-PA 1..728 1..724 3399 88.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18571-PA 724 GE18571-PA 1..724 1..724 3822 97.7 Plus