Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
FI01801.complete Sequence
1083 bp assembled on 2007-09-04
GenBank Submission: BT030800
> FI01801.complete
ACTTTCTTATTAGCGCTAAAATATTCCGCGACTGGGATAATTCAATTTCA
ATTGTAACAAATTTACGCCTCTTGGCCAATTATATACAGGACGGGCAGTT
TGAAGAGCCAGACCCTGAGTCGAGCCATATTGGGTCAAAGAGTTGGCGGA
CAGCGCTTAGATATACGCGTCCACAACACCAACACCGACGACTCCGATCA
ACAGCGCCACCCCCACAAACCCGTGGTCACCAATTGGAACTCCACTGCCA
CTGCCGCCGAGCCCTGGTCCTGATCGTTCACTGTTAAGTCCCGCCAACAG
CAGCTACCTGTCCACATCCACATCACCACACCCGCCACCGGACTACGACG
ACATCTTCGTTGGGTAATAAGGACTCGGATCTGGACTCCAGACCCACGAT
ACGGATGGTGGAACCGTTATATCGGCTTGGTCGTAAAGGAGGAGCAGGCA
CCAGTGCAGGAAGTGCACCTTGATGTTAAGGTCCATTAACCAAGCAAACA
TCACCATGCTGAAGTGCGCTGTTTCGAAGTGGCAGCCGATTTGATGACTA
AGATTCATCCCAATTAAACGACCTATTAAACTCAACTGTGGTGCACGGAA
CTTAAAAAATCTTAAGGAATATGATGAGGAGACGGTGTACCGTGAAAACG
GGAACTGCTGTGCCATTTAGACCAAACTGGCAACCTGTTACATATTTCAG
CCACGTTAGCCAGGCGACACCTGAAGGTAATAACGGCAGGCCACCTGTTG
CTGATCACAAAGACTACAGGAATTTGAAATTACTGACACAGTACCCAATA
CTATGCCCTTATTTATTCTTAGAACATATGTACATAAATACATTAATCGG
CATTTAATGGTATCATCAGTGTTTAAGTCCATGTTTTTGTTGATCTATTA
CATATGTATTTCTTTAATGACATAAAGAAAAAGCTAAACAATTAGAAACT
AAGCCAGAAAGTAGTTGTACAATAGTTAATTAAGGATCGTACCTTATGTT
CAGACATACTTTACTTTAATGAAATTTAATCATTCATTTTCCATATAAGT
ATAATGACTTAAGCATCAAAAAAAAAAAAAAAA
FI01801.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32027-RA | 1065 | CG32027-RA | 1..1065 | 1..1068 | 5270 | 99.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 18831234..18831803 | 1..570 | 2835 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 18832000..18832441 | 626..1067 | 2135 | 98.9 | Plus |
chr3L | 24539361 | chr3L | 18831868..18831921 | 570..623 | 270 | 100 | Plus |
chr2L | 23010047 | chr2L | 19517142..19517206 | 103..39 | 235 | 90.8 | Minus |
chrX | 22417052 | chrX | 6587475..6587518 | 35..78 | 190 | 95.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:06:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18841579..18842148 | 1..570 | 2850 | 100 | Plus |
3L | 28110227 | 3L | 18842345..18842787 | 626..1068 | 2215 | 100 | Plus |
3L | 28110227 | 3L | 18842213..18842266 | 570..623 | 270 | 100 | Plus |
X | 23542271 | X | 6695296..6695339 | 35..78 | 190 | 95.5 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 18834679..18835248 | 1..570 | 2850 | 100 | Plus |
3L | 28103327 | 3L | 18835445..18835887 | 626..1068 | 2215 | 100 | Plus |
3L | 28103327 | 3L | 18835313..18835366 | 570..623 | 270 | 100 | Plus |
X | 23527363 | X | 6703394..6703437 | 35..78 | 190 | 95.4 | Plus |
2L | 23513712 | 2L | 19518607..19518642 | 74..39 | 165 | 97.2 | Minus |
2L | 23513712 | 2L | 19518377..19518410 | 364..331 | 155 | 97 | Minus |
2L | 23513712 | 2L | 19518425..19518467 | 272..230 | 155 | 90.6 | Minus |
Blast to na_te.dros performed 2019-03-15 23:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 6826..6959 | 920..1053 | 137 | 60.6 | Plus |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3172..3311 | 767..907 | 135 | 56 | Plus |
FI01801.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:37:34 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 18831234..18831803 | 1..570 | 99 | -> | Plus |
chr3L | 18831869..18831921 | 571..623 | 100 | -> | Plus |
chr3L | 18832001..18832441 | 624..1067 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:38:26 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32027-RA | 1..234 | 624..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:22:45 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32027-RA | 1..234 | 624..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:43:12 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32027-RA | 1..234 | 624..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:38:19 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32027-RA | 1..1064 | 1..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:22:45 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32027-RA | 1..1064 | 1..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:43:12 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32027-RA | 1..1064 | 1..1067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:34 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18841579..18842148 | 1..570 | 100 | -> | Plus |
3L | 18842214..18842266 | 571..623 | 100 | -> | Plus |
3L | 18842346..18842786 | 624..1067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:34 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18841579..18842148 | 1..570 | 100 | -> | Plus |
3L | 18842214..18842266 | 571..623 | 100 | -> | Plus |
3L | 18842346..18842786 | 624..1067 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:34 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18841579..18842148 | 1..570 | 100 | -> | Plus |
3L | 18842214..18842266 | 571..623 | 100 | -> | Plus |
3L | 18842346..18842786 | 624..1067 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:47 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18834679..18835248 | 1..570 | 100 | -> | Plus |
arm_3L | 18835314..18835366 | 571..623 | 100 | -> | Plus |
arm_3L | 18835446..18835886 | 624..1067 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:47 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18834679..18835248 | 1..570 | 100 | -> | Plus |
arm_3L | 18835314..18835366 | 571..623 | 100 | -> | Plus |
arm_3L | 18835446..18835886 | 624..1067 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:47 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18834679..18835248 | 1..570 | 100 | -> | Plus |
arm_3L | 18835314..18835366 | 571..623 | 100 | -> | Plus |
arm_3L | 18835446..18835886 | 624..1067 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:54:32 Download gff for
FI01801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18834679..18835248 | 1..570 | 100 | -> | Plus |
3L | 18835314..18835366 | 571..623 | 100 | -> | Plus |
3L | 18835446..18835886 | 624..1067 | 99 | | Plus |
FI01801.hyp Sequence
Translation from 2 to 286
> FI01801.hyp
FLISAKIFRDWDNSISIVTNLRLLANYIQDGQFEEPDPESSHIGSKSWRT
ALRYTRPQHQHRRLRSTAPPPQTRGHQLELHCHCRRALVLIVHC*
Sequence FI01801.hyp has no blast hits.
FI01801.pep Sequence
Translation from 620 to 856
> FI01801.pep
MMRRRCTVKTGTAVPFRPNWQPVTYFSHVSQATPEGNNGRPPVADHKDYR
NLKLLTQYPILCPYLFLEHMYINTLIGI*
FI01801.pep Blast Records
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14771-PA | 60 | GD14771-PA | 7..43 | 12..48 | 165 | 83.8 | Plus |