Clone FI01811 Report

Search the DGRC for FI01811

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:18
Well:11
Vector:pFlc-1
Associated Gene/TranscriptCD98hc-RA
Protein status:FI01811.pep: gold
Sequenced Size:2156

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2791 2008-08-15 Release 5.9 accounting
CG2791 2008-12-18 5.12 accounting

Clone Sequence Records

FI01811.complete Sequence

2156 bp assembled on 2008-08-11

GenBank Submission: BT044083.1

> FI01811.complete
ATAAAATATTTTACATACCACACAAACGAGGCATTTGTAAGGAATTCTTC
ACCGCGTTCATTTCGCTAATTCTTGCTGCGGTCTATTTTAGGCGTATGTG
ATAGTACAATCAACGCAGCTGCTGAATACCCACCCGATTCCACGGAGGTC
TACAAAACTATAGCCGAAGATACTTTTGTGGCAGCCAGTTCGAACCCCGA
AAAAGTCGACATGGTCCAGGATGAGAAGGCGGCCCACGCCGATGGCGCCG
ACGAACAGATGCTGGGCTCCAACGGAGTGGAGGATAAGCTGGCCGAGCGT
CGGGATGAGGTTAAGTTCATCAAGGGCGATCACCAGAACGGAGATGCCAA
GATCGACATCGGAACCGTAAACGGAGGCAAGCCCGCCTTCACTGGTATGA
GCAAGGAGGAGCTCATGAAGTACGCCAACGACCCTTTCTGGGTGCGACTC
CGCTGGATCTTCTTCGTGTGCTTCTGGGCCATTTGGGTGGGCATGCTGGT
GGGCGCCATCCTAATCATCATCGGAGCCCCCAAGTGCGCTGCTCCGCAGC
CACTTCCATGGTACAAGCGTGGACCACATGCCAAGTTCGCCAGCGTTGAG
ACCTGTAGGCCAGAGGATGTTCAGGTCGCCAAAAAACTGGTTTCCGCTGG
CGCGATTTATGAGCTTCCAGCTGCTCTGACCTACGACGTGAAGAAGCCGG
AGGTGGAGGAGAAGATCAAGCATTTGGTGGCTCTGTACCAGGGCAGCGAT
ACCAGGGTTATACTTGACCTGACGCCCAACTACGCGGCAAAGAACTCGCA
GCTTGTGCAGGATGCCATTGCAAACCCGGAGAAGAGATCGGCCTTTGTCT
GGGTGAGCGGCGGTAAAGCTCTTCCCAACAACTGGCTCAAGGTGGGCGGC
AATCGCAGCGCCTGGGAAAAGGTTGGAGACAACTATGTGCTCTCCCAGTT
CGAAGACGGGTACTACGACCTCAAGATGAACAGTACCATCATTAGGAACG
AGTTCGGAGCAGTCCTAAAGCATCTGGTGGCATTGGGCGTTCGAGGCTTC
CGCCTGAAGAATACCAAGTTCTTTGCGCTATTCGATAGCCTCGAGGATGA
GCAGATCTCGTCATCGCCGAAGGACTTCAGCCTGGGACCCAATGAATATG
GCTTCTACTCCCACAGACAAACAACTTTCCTATCCGGCCTGGGCGATGTG
CTCTATGATTACCTGAGCATCGTGAAGAATGCCTCCGACGAGGCTTTCTT
CTCGGTTGCCGAAGATGTCATGGAACCACAGGTGTACCAGTTGAGCGGGG
ATTCTGGAGCATACGGCATCGATCTGCCTATGTACGGAAACTTTGTAAAG
GTGCTCAGCAAATCTAAGCCAGACACGTCGCTACAGAAGGAACTGGATAA
CACACTCGCCCAATCGGGCACGGACAGCTGGCTGCAGTGGAACTTAGCGG
ACGTCTATGTCGACACCCCACAGGATCCATCTGCTCTGGCCATGTTCCTA
TCCCTGCTGCCCGGTGTTCCCGTGGTGGCTGTGGATGCTGTGGCTTATCA
AAACGTTACCGAGGAGACCTACAGGCAGATCACCTCTCTGCGCAAGACTG
CATCCTACATGCATGGAAATCTTAATCTCTACCAGGCCGATCCACTGGTC
GCCTTCTCCAGGATCAAGTCTGGAAACCCTGGCTACTTTGTCATCTTCAA
TCCCACCGAACTGCCGCAGGCGAGCAACTTTACTATCCCAGACAATCTGC
CGGACAAGATGACGGTGTCCTATTTCAGCGAGCAGTACAACAATAACATG
GATAACTCCGGAAAGGTTGCTCATGCTGGACGCGTGAATCTCAAGGATCT
CAAGGTGGCCCCGCACTCCAGCATTATCCTGACCTATGTGCCAGTGAAGG
CGGAGTAATGTGGTAGTACCTGTAACTATCCACCAAAATAAACAATATCG
CATAATGGCATATATACAGAAATTGTATAAAAAAGTAACTCGCTTTGTTA
ACCGTTGAGATTTAAAGCCGCCAAACAAAATTAAAAACTTATTCGCTGAG
AACTTTTTAGACTTGCTTGCTTGTTAAATGCGCTTGCTAAGAAATAAATA
CAATATTTGCTTGCATTTAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAA
AAAAAA

FI01811.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CD98hc-RA 2176 CD98hc-RA 22..2141 1..2120 10585 99.9 Plus
CD98hc.a 2106 CD98hc.a 69..2098 91..2120 10135 99.9 Plus
CD98hc.d 2105 CD98hc.d 69..1640 91..1662 7845 99.9 Plus
CD98hc.d 2105 CD98hc.d 1644..2104 1660..2120 2305 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3801183..3802460 1662..385 6360 99.8 Minus
chr3R 27901430 chr3R 3800454..3800915 2120..1659 2310 100 Minus
chr3R 27901430 chr3R 3803609..3803813 205..1 1010 99.5 Minus
chr3R 27901430 chr3R 3802936..3803117 385..204 910 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:06:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7975136..7976413 1662..385 6375 99.9 Minus
3R 32079331 3R 7974407..7974868 2120..1659 2310 100 Minus
3R 32079331 3R 7977562..7977766 205..1 1025 100 Minus
3R 32079331 3R 7976889..7977070 385..204 910 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7715967..7717244 1662..385 6375 99.9 Minus
3R 31820162 3R 7715238..7715699 2120..1659 2310 100 Minus
3R 31820162 3R 7718393..7718597 205..1 1025 100 Minus
3R 31820162 3R 7717720..7717901 385..204 910 100 Minus
Blast to na_te.dros performed 2019-03-16 00:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 1970..2047 2050..2133 126 66.7 Plus

FI01811.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:31:34 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3800456..3800912 1662..2118 100 <- Minus
chr3R 3801184..3802460 385..1661 99 <- Minus
chr3R 3802937..3803115 206..384 100 <- Minus
chr3R 3803609..3803813 1..205 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:38:30 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2791-RA 1..1698 211..1908 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:09:53 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CD98hc-RA 1..1698 211..1908 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:36:54 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CD98hc-RA 1..1698 211..1908 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:18 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2791-RA 1..1698 211..1908 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:04:30 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CD98hc-RA 1..1698 211..1908 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:49:18 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2791-RA 1..2118 1..2118 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:09:53 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CD98hc-RA 1..2118 1..2118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:36:54 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CD98hc-RA 4..2121 1..2118 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:29:38 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2791-RA 1..2118 1..2118 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:04:30 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
CD98hc-RA 4..2121 1..2118 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:34 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7974409..7974865 1662..2118 100 <- Minus
3R 7975137..7976413 385..1661 99 <- Minus
3R 7976890..7977068 206..384 100 <- Minus
3R 7977562..7977766 1..205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:34 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7974409..7974865 1662..2118 100 <- Minus
3R 7975137..7976413 385..1661 99 <- Minus
3R 7976890..7977068 206..384 100 <- Minus
3R 7977562..7977766 1..205 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:31:34 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7974409..7974865 1662..2118 100 <- Minus
3R 7975137..7976413 385..1661 99 <- Minus
3R 7976890..7977068 206..384 100 <- Minus
3R 7977562..7977766 1..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:36:54 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3800131..3800587 1662..2118 100 <- Minus
arm_3R 3800859..3802135 385..1661 99 <- Minus
arm_3R 3802612..3802790 206..384 100 <- Minus
arm_3R 3803284..3803488 1..205 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:49 Download gff for FI01811.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7715240..7715696 1662..2118 100 <- Minus
3R 7715968..7717244 385..1661 99 <- Minus
3R 7717721..7717899 206..384 100 <- Minus
3R 7718393..7718597 1..205 100   Minus

FI01811.pep Sequence

Translation from 210 to 1907

> FI01811.pep
MVQDEKAAHADGADEQMLGSNGVEDKLAERRDEVKFIKGDHQNGDAKIDI
GTVNGGKPAFTGMSKEELMKYANDPFWVRLRWIFFVCFWAIWVGMLVGAI
LIIIGAPKCAAPQPLPWYKRGPHAKFASVETCRPEDVQVAKKLVSAGAIY
ELPAALTYDVKKPEVEEKIKHLVALYQGSDTRVILDLTPNYAAKNSQLVQ
DAIANPEKRSAFVWVSGGKALPNNWLKVGGNRSAWEKVGDNYVLSQFEDG
YYDLKMNSTIIRNEFGAVLKHLVALGVRGFRLKNTKFFALFDSLEDEQIS
SSPKDFSLGPNEYGFYSHRQTTFLSGLGDVLYDYLSIVKNASDEAFFSVA
EDVMEPQVYQLSGDSGAYGIDLPMYGNFVKVLSKSKPDTSLQKELDNTLA
QSGTDSWLQWNLADVYVDTPQDPSALAMFLSLLPGVPVVAVDAVAYQNVT
EETYRQITSLRKTASYMHGNLNLYQADPLVAFSRIKSGNPGYFVIFNPTE
LPQASNFTIPDNLPDKMTVSYFSEQYNNNMDNSGKVAHAGRVNLKDLKVA
PHSSIILTYVPVKAE*

FI01811.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16561-PA 590 GF16561-PA 27..590 1..565 2421 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24807-PA 629 GG24807-PA 65..629 1..565 2748 90.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22842-PA 598 GH22842-PA 31..598 1..565 1949 64.2 Plus
Dgri\GH20813-PA 576 GH20813-PA 96..360 167..414 155 21.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CD98hc-PB 565 CG2791-PB 1..565 1..565 2955 100 Plus
CD98hc-PF 565 CG2791-PF 1..565 1..565 2955 100 Plus
CD98hc-PA 565 CG2791-PA 1..565 1..565 2955 100 Plus
CD98hc-PD 567 CG2791-PD 1..567 1..565 2942 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10226-PA 559 GI10226-PA 1..559 1..565 1993 65.5 Plus
Dmoj\Mal-A5-PA 626 GI18697-PA 119..405 169..439 160 23.8 Plus
Dmoj\Mal-A1-PA 577 GI20901-PA 96..391 167..439 157 20.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23548-PA 562 GL23548-PA 1..562 1..565 2281 75.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15464-PA 562 GA15464-PA 1..562 1..565 2273 75.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10442-PA 583 GM10442-PA 65..583 1..565 2315 81.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19444-PA 629 GD19444-PA 65..629 1..565 2632 90.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11031-PA 595 GJ11031-PA 31..595 1..565 1972 65.8 Plus
Dvir\Mal-A5-PA 636 GJ21715-PA 131..406 180..439 165 25.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14296-PA 596 GK14296-PA 37..596 5..562 1871 64.1 Plus
Dwil\GK12355-PA 113 GK12355-PA 1..111 152..265 273 50 Plus
Dwil\GK14277-PA 167 GK14277-PA 46..130 412..494 225 54.1 Plus
Dwil\GK12356-PA 134 GK12356-PA 1..128 426..553 178 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25755-PA 597 GE25755-PA 33..597 1..565 2702 91 Plus

FI01811.hyp Sequence

Translation from 210 to 1907

> FI01811.hyp
MVQDEKAAHADGADEQMLGSNGVEDKLAERRDEVKFIKGDHQNGDAKIDI
GTVNGGKPAFTGMSKEELMKYANDPFWVRLRWIFFVCFWAIWVGMLVGAI
LIIIGAPKCAAPQPLPWYKRGPHAKFASVETCRPEDVQVAKKLVSAGAIY
ELPAALTYDVKKPEVEEKIKHLVALYQGSDTRVILDLTPNYAAKNSQLVQ
DAIANPEKRSAFVWVSGGKALPNNWLKVGGNRSAWEKVGDNYVLSQFEDG
YYDLKMNSTIIRNEFGAVLKHLVALGVRGFRLKNTKFFALFDSLEDEQIS
SSPKDFSLGPNEYGFYSHRQTTFLSGLGDVLYDYLSIVKNASDEAFFSVA
EDVMEPQVYQLSGDSGAYGIDLPMYGNFVKVLSKSKPDTSLQKELDNTLA
QSGTDSWLQWNLADVYVDTPQDPSALAMFLSLLPGVPVVAVDAVAYQNVT
EETYRQITSLRKTASYMHGNLNLYQADPLVAFSRIKSGNPGYFVIFNPTE
LPQASNFTIPDNLPDKMTVSYFSEQYNNNMDNSGKVAHAGRVNLKDLKVA
PHSSIILTYVPVKAE*

FI01811.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CD98hc-PB 565 CG2791-PB 1..565 1..565 2955 100 Plus
CD98hc-PF 565 CG2791-PF 1..565 1..565 2955 100 Plus
CD98hc-PA 565 CG2791-PA 1..565 1..565 2955 100 Plus
CD98hc-PD 567 CG2791-PD 1..567 1..565 2942 99.6 Plus