Clone FI01820 Report

Search the DGRC for FI01820

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:18
Well:20
Vector:pFlc-1
Associated Gene/TranscriptCG13895-RA
Protein status:FI01820.pep: gold
Sequenced Size:1942

Clone Sequence Records

FI01820.complete Sequence

1942 bp assembled on 2009-01-05

GenBank Submission: BT056233.1

> FI01820.complete
AGTCATTGAGTTGCACTCGCTCTGGCAACTTTAAACACGTGCGACCGCAC
ATATTTTCTGTTTAATGTGCCTAAAAAACTGCTGTATATTTTCAACAAAG
TGTACTTTATGCTCTAAGCTTTCCGACTGAGGAACAGAATTATATTGGTC
ACGTGAGGAGGGGGGGCCAGACTGGGAGTGCGAGCACGCTAAGAGAGAGT
GGAGAACCTGAAAGTGTGAGAGCGGGAGTGGAAATGTACTCTGACAATGA
TGACACCCACAAAAACTCGAATGGATCGCATCGCATACGGAACGTGCTGA
CTTTGGAGGAGCGTGTGGCTGCCATCCGACAGTACGACATTGTGCCCATG
TACAGTAAGATTGCGAGGAACTTTAATTGCAGCTGGGAGCAAATCAAGAG
CATAGTCTCCAATCGGGAAGCCATCCTGGAGTTCCACAAGGCCACCAATC
GGCTCAGCCAGCCGGCCAATAAGGATGCCGAGCTGCGCCGGCGCAAGCTG
AACTTTCTGGGCCACTGCCTGTACGAGTACATCCAGAGGGCCCAGTTTTA
CCTCCACAGCGATGTGAACGAGGAGATGATCCGCAACCGTGCGATCGAGT
TCCGGGATCTCATGCAACTCGATGGTTTTGTGCCGAACAAACCGTGGATC
AATCACTTCAAGGCCGCCTATAATATAACACTGTCGAATCGTCAGATCAC
GATAGTCCGCCGACCACCACGATCTATGGACTTGAGGGACATTATGTCGT
ACTGTGGACGACACACCTCGATGTCTTGTAGCTTAGCGCCTAGATCGCCG
GAACCTGCGCTCACTAGCAGTGATCGACCTCTTTATCGTACAAAGACATT
GGTCACCACCTCTAGCCAAAATCAAGCCACCTCGGATGAAGTGCACCTGC
GTAGAAAGCGAAAGTTAGCGTTCCTGGAGAAATGCGTTTATGAATACATC
CAGCGATCACAGTTGGTTCGCCAGGGTCGTCTTGACCTAGACAATTTGCG
CTTTGTGGCCATTAGTTTAAGGGACATCCTCAAAATCGACTCCTTCTTTC
CCGACAAAGTGTGGTTGAAGCACTTTAAGAGTCGCTATAACTTTAATTTC
ACGGTGGGAGTTCAGGTGACGAACCGCCGCTTGCCGCTTTCCCTGGACCT
AAGAGATATAGTTAGTTATTGCGGCCGGAATGAACATAAGATCACGCTGG
ACCACAAGAAGTCGCAGGAAGAACTGAGCCAGAGCGACAAGCCAGAGGTG
GACCAATGCCCACAGGTGGAACCAAAACCCGAAGAATTTGAGCACGAAGA
AGACGATGATTGCGTGGCCATTGAAGTGCCACCTGAGCTCATAGAAATAA
AGGATGATGAGGATAATGACGATGAGCATAATGATAATGAGGATTTGCCA
GAAAGGGCTACTAAACGAAAATCAGACGAGAACGGCGGCCCAATACCATG
TGGCTTGAAGATTCAGAAGATTCAATCGCTCAATGAGTCATTGCCTGAGG
ATACGGAACTACTTCCAGCCAATAGTCCCGGTCATTATTCAGAGACCAGC
GATGAGGCACATCTGCCGCGCTGCGTAGAAAGCTACAAGGACGCACTGCG
TCTACTGAAGCCCCTGGAGGAATTCGTCCTAATGGAGGAGAACTATCGAG
CCATTGGCCTGCTCACGCAGCTGGAGAAGATCTTTGAGTCCGCTGCGAAA
AAGAGTGAGGAAATGGACAAATCCTTAGAATAAGTACCAAACCAAAAACA
TGTGCCTTAGGTTATAAGTATGTTTAGATCTTTGAGTACCCTCTGCAGGG
TATAAGATAGGCTTTATGAAAACTGCGTTATTTCACTGAAAATGTGTATT
TAATTTAAAACAAACAAGCAAGCGTAAACTAACTATTTGTAAATCAAATA
CAAGCTTCAAACACGCATATAAAACGAAAAAAAAAAAAAAAA

FI01820.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13895-RA 2289 CG13895-RA 310..2237 1..1928 9610 99.8 Plus
CG13895.a 2472 CG13895.a 310..2237 1..1928 9610 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 705764..707442 1924..246 8260 99.5 Minus
chr3L 24539361 chr3L 707890..708021 132..1 660 100 Minus
chr3L 24539361 chr3L 707710..707825 245..130 580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:06:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 705940..707622 1928..246 8385 99.9 Minus
3L 28110227 3L 708070..708201 132..1 660 100 Minus
3L 28110227 3L 707890..708005 245..130 580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 705940..707622 1928..246 8385 99.8 Minus
3L 28103327 3L 708070..708201 132..1 660 100 Minus
3L 28103327 3L 707890..708005 245..130 580 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:44:32 has no hits.

FI01820.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:45:33 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 705762..707442 246..1926 96 <- Minus
chr3L 707710..707823 132..245 100 <- Minus
chr3L 707891..708021 1..131 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:50:05 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 1..1500 234..1733 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:22:05 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 1..1500 234..1733 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:54:52 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 1..1500 234..1733 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:57 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 1..1500 234..1733 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-05 17:18:38 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 1..1923 1..1923 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:22:05 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 1..1923 1..1923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:52 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 5..1924 1..1920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:57 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
CG13895-RA 5..1924 1..1920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:33 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
3L 705942..707622 246..1926 99 <- Minus
3L 707890..708003 132..245 100 <- Minus
3L 708071..708201 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:33 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
3L 705942..707622 246..1926 99 <- Minus
3L 707890..708003 132..245 100 <- Minus
3L 708071..708201 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:45:33 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
3L 705942..707622 246..1926 99 <- Minus
3L 707890..708003 132..245 100 <- Minus
3L 708071..708201 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:52 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 705942..707622 246..1926 99 <- Minus
arm_3L 707890..708003 132..245 100 <- Minus
arm_3L 708071..708201 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:10:05 Download gff for FI01820.complete
Subject Subject Range Query Range Percent Splice Strand
3L 705942..707622 246..1926 99 <- Minus
3L 707890..708003 132..245 100 <- Minus
3L 708071..708201 1..131 100   Minus

FI01820.pep Sequence

Translation from 233 to 1732

> FI01820.pep
MYSDNDDTHKNSNGSHRIRNVLTLEERVAAIRQYDIVPMYSKIARNFNCS
WEQIKSIVSNREAILEFHKATNRLSQPANKDAELRRRKLNFLGHCLYEYI
QRAQFYLHSDVNEEMIRNRAIEFRDLMQLDGFVPNKPWINHFKAAYNITL
SNRQITIVRRPPRSMDLRDIMSYCGRHTSMSCSLAPRSPEPALTSSDRPL
YRTKTLVTTSSQNQATSDEVHLRRKRKLAFLEKCVYEYIQRSQLVRQGRL
DLDNLRFVAISLRDILKIDSFFPDKVWLKHFKSRYNFNFTVGVQVTNRRL
PLSLDLRDIVSYCGRNEHKITLDHKKSQEELSQSDKPEVDQCPQVEPKPE
EFEHEEDDDCVAIEVPPELIEIKDDEDNDDEHNDNEDLPERATKRKSDEN
GGPIPCGLKIQKIQSLNESLPEDTELLPANSPGHYSETSDEAHLPRCVES
YKDALRLLKPLEEFVLMEENYRAIGLLTQLEKIFESAAKKSEEMDKSLE*

FI01820.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24070-PA 485 GF24070-PA 1..483 1..490 1553 62.3 Plus
Dana\GF24076-PA 589 GF24076-PA 84..236 19..171 255 34.4 Plus
Dana\GF24071-PA 181 GF24071-PA 1..177 265..490 241 36.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14642-PA 498 GG14642-PA 1..498 1..499 2273 89.9 Plus
Dere\GG14647-PA 582 GG14647-PA 92..227 19..155 251 36.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16035-PA 551 GH16035-PA 17..547 16..489 1370 55.8 Plus
Dgri\GH16041-PA 604 GH16041-PA 74..202 19..148 251 36.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13895-PA 499 CG13895-PA 1..499 1..499 2611 100 Plus
CG13895-PB 506 CG13895-PB 1..506 1..499 2593 98.6 Plus
ebd1-PA 581 CG3371-PA 92..244 19..171 250 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12299-PA 523 GI12299-PA 3..520 5..492 1384 54.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20834-PA 294 GL20834-PA 84..292 301..486 361 44.7 Plus
Dper\GL20834-PA 294 GL20834-PA 1..75 1..74 294 73.3 Plus
Dper\GL20839-PA 576 GL20839-PA 72..200 19..148 246 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12609-PA 508 GA12609-PA 1..506 1..486 1553 61.3 Plus
Dpse\GA17411-PA 576 GA17411-PA 72..200 19..148 246 35.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14257-PA 469 GM14257-PA 1..469 1..499 2215 88.8 Plus
Dsec\GM14262-PA 581 GM14262-PA 92..227 19..155 255 37.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13514-PA 493 GD13514-PA 1..493 1..499 2423 94 Plus
Dsim\GD13519-PA 581 GD13519-PA 92..227 19..155 256 37.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13236-PA 532 GJ13236-PA 1..526 1..492 1412 57.3 Plus
Dvir\GJ13241-PA 557 GJ13241-PA 77..205 19..148 259 38.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16679-PA 504 GK16679-PA 1..500 1..491 1551 62.6 Plus
Dwil\GK16684-PA 620 GK16684-PA 103..231 19..148 253 37.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21000-PA 498 GE21000-PA 1..498 1..499 2344 89.9 Plus
Dyak\GE21007-PA 588 GE21007-PA 96..248 19..171 254 35.7 Plus

FI01820.hyp Sequence

Translation from 233 to 1732

> FI01820.hyp
MYSDNDDTHKNSNGSHRIRNVLTLEERVAAIRQYDIVPMYSKIARNFNCS
WEQIKSIVSNREAILEFHKATNRLSQPANKDAELRRRKLNFLGHCLYEYI
QRAQFYLHSDVNEEMIRNRAIEFRDLMQLDGFVPNKPWINHFKAAYNITL
SNRQITIVRRPPRSMDLRDIMSYCGRHTSMSCSLAPRSPEPALTSSDRPL
YRTKTLVTTSSQNQATSDEVHLRRKRKLAFLEKCVYEYIQRSQLVRQGRL
DLDNLRFVAISLRDILKIDSFFPDKVWLKHFKSRYNFNFTVGVQVTNRRL
PLSLDLRDIVSYCGRNEHKITLDHKKSQEELSQSDKPEVDQCPQVEPKPE
EFEHEEDDDCVAIEVPPELIEIKDDEDNDDEHNDNEDLPERATKRKSDEN
GGPIPCGLKIQKIQSLNESLPEDTELLPANSPGHYSETSDEAHLPRCVES
YKDALRLLKPLEEFVLMEENYRAIGLLTQLEKIFESAAKKSEEMDKSLE*

FI01820.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13895-PA 499 CG13895-PA 1..499 1..499 2611 100 Plus
CG13895-PB 506 CG13895-PB 1..506 1..499 2593 98.6 Plus
ebd1-PA 581 CG3371-PA 92..244 19..171 250 35.7 Plus