Clone FI02012 Report

Search the DGRC for FI02012

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:20
Well:12
Vector:pFlc-1
Associated Gene/TranscriptHPS4-RB
Protein status:FI02012.pep: gold
Sequenced Size:3421

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4966 2008-12-18 5.12 accounting

Clone Sequence Records

FI02012.complete Sequence

3421 bp assembled on 2008-10-24

GenBank Submission: BT050428.1

> FI02012.complete
ACTGAGGTATGGCAGCGCCGTAAGTTCCTCTGCAAAGAAAAATAAAAACT
AATGAATAAAATGAAGCAGAAATAAAGTGCAATAATCTTCCGACAACGAG
AGGTTACAAGTGCAATACACAATGGCTGCAAAGGAGACGATGATTGTGTT
TGTCTACGACACAGAGTGTCTCACAGACGAGGCGGATGATCCCATATCGG
CGGTGCTCTACTTCCATCCAAGCTGGGTGTCCGACTCCCAGAAGGTGGCT
CTGTGTGGTCAGCTTATGGGCACGTCGTATTTCCTCAAGGATTGCTTCTT
TAATCCCCGCATCCTGGCGCTGCAGAATGGAAAATTTGTGCTGAAGGAAT
TCGGTCGTTTTATTCTGGCAATTGGCACTGATCGAAATATTGGAGATCAA
CTGTTGGAACATCGTGCTGATCTGCTGAGTTCCCTGCTCAAGTTTTTCCA
CCGTGACGTCCAGACATTGTATGCCCAGTATGCTGCACCGCCCGCCCTGA
ACCGCCGGAATCTCAGCGAGAAACTGTACCACATCTTTGAAACATATCTG
CCGATGCTGCAGCGCAACGGAAATACATTTCAAAATGTGCCGAGGCTGCG
AATGCCAAAGACGGCCAGTCATATATTCCTGGAGGCTATACAAACGTTGC
AAAGTTGCCAGCAGACAAAGGGAATACTTGGCGGAGCGATTCTGTACCAC
AACAAGGTGGTTGCCTCGCAACTGAGCGATATGGTGACCAAGCATCTTGT
ACTCACCGATCCTCTGCACATCCGCACTGCGGCCGAGCAAGTGACCAACC
ATCCTGAGTTCCACATACCCAACGGCGTTCAGATGCTGGTGGTTTATTTG
GAGCATATGCAGTACCGCCAGTTAGCTGGCGAGGCACAGCGCGCCCAGAA
CCTGCAGATGAACACAGCTCAGCTCACCCAAAATGGTATGCCGTTTCAGT
ATGCCAAGCGTAAGATAAAGCGGGACAAGTCGCTCATTTTTACCCATATA
CCCGAGGAGGAGCACGCCCCGGAGCAGCAGGGAGCAGTTGAACAGCTACC
ACCAGCCAGGCCCAAATCTATGCGACCCACCCACCTGCCGTTGCGTATAA
AAAGCATGCAGAGCAAAGAGCTACCGGAGTCTGGCATTGCATCAATAAAT
TTCGACGAAACCGATTCCTATCCGCAGTTCATTGGACGAACCAGCGTTTG
CAATACTCCAATGACCGAGAACAAGGTACTGCCGGTGGCCAATGTTATGT
CCATTTGCGCAAATCCCGAAGATGAGGGCAAAGAGGAGGATATTCACAAT
TCCAATGGCAAGACACATTCGCGTCGAAATTCTCTAAAAGTGGATGTGGA
GAAATTCTTTCAAAACTTCATTAGCAATCCAAACAAACAGCTCACACGAC
GCAAATCATCTGCAGACCTGCAGGATGCACTTCGCGCCATCTCCAAGAAA
CTGAATAATTTTACGCATGGCCTCAAAACCGATGTGAATCGAAATGGAAG
CGGTAATGGTGATGTCTCTTCGGATTCGCCAGATTTCATAGAGGACGATG
ATAAGATTACTTCGCGGACCATCAGCGATCCCACCTATCCGGTATTCAAC
ACTAACGGCCAGCAGATCTCGCGCAGTTTGTTTCAGCAATTTCTGGATCA
GTATCGTAAATTGTGGGGTGTTGCTAGTGAGCAGGCGCACGAGGATGCCG
AGCTAGCCGCTCTGGTAGCCGAGTTCCAGGAGTTCAACGCCGAGATCCAA
AAGCTCGACGAGCACATGAGACAGCAAGCAGCGGAAGCATCGTCTGCCGA
TAGGAATCTCAACGTTTCCGCAGCCAAAACTCCGCTGGACAAGCGATCCA
TGACGCTGCCATTGAAATCAGCAGGAGAATCTACTTTCGGAGAGCGTGCG
TCCGGACGCAGTGGAGCTGGTGGAGTACCACTAACACCCCTGATGGCCAA
ACTATCTGTTCTGGCTCTAAGCGAAACAACGCCCATCGAGATACAAACTC
CGCTGACAACCAGTAAGGTTTTCCCACGGCGAAGTTCACTGAAGTGCGAG
GATGCAGTGGATGCATTGGCTGCCTTGACCACAGCCCCTGCTCAACCTCC
GGGTCCAATTCAACCAGATGGCTTGCAAAGAACTGAACTCTATATATGCG
GACAGCAGAATATGACCTTATTATTGCTCATGGAGGAGGGTACTTGTCAA
CAACAGCAGGTTGTGCAGAAGATGTTCGACATTTGTGTGGCCAAGTTCCC
GCACATGGAATCTCAACTGAATCAAACCTTAAATGTAAATGTGGAGGGCG
ACAATCGCGACGGGAGCAACTATAGCTTCATGTGCGTGGACTCCAAGTGG
GATGTTCTGCAGCGGAATGGCCCTTGGAATCCCCTAGAGCTTAATATCCT
CGAGAGCATGCACTCGATACATTCCAGTGGTCATCATCTTACAGATTTGA
TCTTGAGATCCAACGACTCCGTTTATTATGGCCATAAGAATGGAAGGACC
GAGTTCTTCTACAAGGAACCTACCCATCAGATCAATGGCATACCACCGCC
CTCGGATCCGATTGGCAATATACAATCCCGCGCCAAGTCGCGACTGGAAC
GTGATCATTCCTACATGCTGTTCTAGGCTGTGCAATGGATCGTATATTAT
AAACATATTTAAATACTCGCATGCTTAGCCAAAAACAGATAATGTAATCG
GGGACACCAGATAGTCTGGGTCCCCGAAGAATAGCCAACTTAATGCCATC
CACTGTTATTTCATTTGCGATCTCTGGCTGATTCCTTCGTGAGTCTTTTC
TTTTGTATAGTGGTTAGATAATGATTCCATATCATATACAATGCAAACCA
AGGGAACTCAATTTTAAACGATCTAAATTTTACTTCGACTTTTATACAAC
AAATTTATAAGAAACATTGCCGACCTTTTTTACCGCCATTCAATGGACTC
ACGAAGGAAACCAAAAGAATTTTAGATATGCCGCTTACAGCCAGCGAAAT
ATTAAGCCTTGTTTGAATTTTCACTTGATTGATGTAAAGTACAAAAATGT
TTTAAGCTTTGTTTACAATGTCCAGCACTGTTGTTTAATTTATAAGCTTG
TATCCTATACAATTATTTTAATCATTTTGCATTTGCTTTGACCGAAAAGA
TGCGACATTTTGCACTGATTTCGAGAGCCAAAGAATTTAAATCAAGGTTT
TTAATTGTAAATATACATTATACAAAATTAGATTCATTTAAATGGAATAA
TGTGTAACTAACCTAAAATTCACACAGATTCCGTTCTGTCCAGTTGCAAA
CATAAACCTATCTTAGCTGTTTCTCATTATCAAAGATTAAGCGCTTTGTG
CCAATTTAAATGCAGGATAAATGCTTAAAATAAACCGTCAAATATGTAGG
AACGTGAAAAAAAAAAAAAAA

FI02012.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4966-RB 3588 CG4966-RB 84..3490 1..3407 17020 99.9 Plus
CG4966-RA 3627 CG4966-RA 230..3504 133..3407 16375 100 Plus
CG4966-RC 3383 CG4966-RC 110..3383 133..3406 16370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13575109..13576627 706..2224 7565 99.9 Plus
chr2R 21145070 chr2R 13576974..13577924 2456..3406 4710 99.7 Plus
chr2R 21145070 chr2R 13574657..13574900 367..610 1190 99.2 Plus
chr2R 21145070 chr2R 13574360..13574595 133..368 1180 100 Plus
chr2R 21145070 chr2R 13576684..13576917 2224..2457 1170 100 Plus
chr2R 21145070 chr2R 13570699..13570831 1..133 650 99.2 Plus
chr2R 21145070 chr2R 13574954..13575051 609..706 490 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:07:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17688007..17689525 706..2224 7595 100 Plus
2R 25286936 2R 17689872..17690823 2456..3407 4760 100 Plus
2R 25286936 2R 17687555..17687798 367..610 1220 100 Plus
2R 25286936 2R 17687258..17687493 133..368 1180 100 Plus
2R 25286936 2R 17689582..17689815 2224..2457 1170 100 Plus
2R 25286936 2R 17683597..17683729 1..133 650 99.2 Plus
2R 25286936 2R 17687852..17687949 609..706 490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17689206..17690724 706..2224 7595 100 Plus
2R 25260384 2R 17691071..17692022 2456..3407 4760 100 Plus
2R 25260384 2R 17688754..17688997 367..610 1220 100 Plus
2R 25260384 2R 17688457..17688692 133..368 1180 100 Plus
2R 25260384 2R 17690781..17691014 2224..2457 1170 100 Plus
2R 25260384 2R 17684796..17684928 1..133 650 99.2 Plus
2R 25260384 2R 17689051..17689148 609..706 490 100 Plus
Blast to na_te.dros performed 2019-03-16 05:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1321..1580 3259..3012 128 54.2 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 925..1054 3134..3000 123 57 Minus

FI02012.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:04:33 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13570699..13570830 1..132 99 -> Plus
chr2R 13574360..13574594 133..367 100 -> Plus
chr2R 13574658..13574900 368..610 99 -> Plus
chr2R 13574956..13575050 611..705 100 -> Plus
chr2R 13575109..13576627 706..2224 99 -> Plus
chr2R 13576685..13576917 2225..2457 100 -> Plus
chr2R 13576976..13577924 2458..3406 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:39:03 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
CG4966-RB 1..2505 122..2626 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:16:44 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
HPS4-RB 1..2505 122..2626 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:02 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
HPS4-RB 1..2505 122..2626 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:55:17 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
HPS4-RB 1..2505 122..2626 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:56:23 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
CG4966-RB 1..3406 1..3406 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:16:44 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
HPS4-RB 1..3406 1..3406 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:02 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
HPS4-RB 24..3429 1..3406 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-10-24 15:50:38 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
CG4966-RB 1..3406 1..3406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:55:17 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
HPS4-RB 24..3429 1..3406 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:04:33 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17687258..17687492 133..367 100 -> Plus
2R 17683597..17683728 1..132 99 -> Plus
2R 17687556..17687798 368..610 100 -> Plus
2R 17687854..17687948 611..705 100 -> Plus
2R 17688007..17689525 706..2224 100 -> Plus
2R 17689583..17689815 2225..2457 100 -> Plus
2R 17689874..17690822 2458..3406 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:04:33 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17687258..17687492 133..367 100 -> Plus
2R 17683597..17683728 1..132 99 -> Plus
2R 17687556..17687798 368..610 100 -> Plus
2R 17687854..17687948 611..705 100 -> Plus
2R 17688007..17689525 706..2224 100 -> Plus
2R 17689583..17689815 2225..2457 100 -> Plus
2R 17689874..17690822 2458..3406 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:04:33 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17687258..17687492 133..367 100 -> Plus
2R 17683597..17683728 1..132 99 -> Plus
2R 17687556..17687798 368..610 100 -> Plus
2R 17687854..17687948 611..705 100 -> Plus
2R 17688007..17689525 706..2224 100 -> Plus
2R 17689583..17689815 2225..2457 100 -> Plus
2R 17689874..17690822 2458..3406 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:02 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13571102..13571233 1..132 99 -> Plus
arm_2R 13577088..13577320 2225..2457 100 -> Plus
arm_2R 13574763..13574997 133..367 100 -> Plus
arm_2R 13575061..13575303 368..610 100 -> Plus
arm_2R 13575359..13575453 611..705 100 -> Plus
arm_2R 13575512..13577030 706..2224 100 -> Plus
arm_2R 13577379..13578327 2458..3406 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:47:44 Download gff for FI02012.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17688457..17688691 133..367 100 -> Plus
2R 17688755..17688997 368..610 100 -> Plus
2R 17689053..17689147 611..705 100 -> Plus
2R 17689206..17690724 706..2224 100 -> Plus
2R 17690782..17691014 2225..2457 100 -> Plus
2R 17691073..17692021 2458..3406 100   Plus
2R 17684796..17684927 1..132 99 -> Plus

FI02012.pep Sequence

Translation from 121 to 2625

> FI02012.pep
MAAKETMIVFVYDTECLTDEADDPISAVLYFHPSWVSDSQKVALCGQLMG
TSYFLKDCFFNPRILALQNGKFVLKEFGRFILAIGTDRNIGDQLLEHRAD
LLSSLLKFFHRDVQTLYAQYAAPPALNRRNLSEKLYHIFETYLPMLQRNG
NTFQNVPRLRMPKTASHIFLEAIQTLQSCQQTKGILGGAILYHNKVVASQ
LSDMVTKHLVLTDPLHIRTAAEQVTNHPEFHIPNGVQMLVVYLEHMQYRQ
LAGEAQRAQNLQMNTAQLTQNGMPFQYAKRKIKRDKSLIFTHIPEEEHAP
EQQGAVEQLPPARPKSMRPTHLPLRIKSMQSKELPESGIASINFDETDSY
PQFIGRTSVCNTPMTENKVLPVANVMSICANPEDEGKEEDIHNSNGKTHS
RRNSLKVDVEKFFQNFISNPNKQLTRRKSSADLQDALRAISKKLNNFTHG
LKTDVNRNGSGNGDVSSDSPDFIEDDDKITSRTISDPTYPVFNTNGQQIS
RSLFQQFLDQYRKLWGVASEQAHEDAELAALVAEFQEFNAEIQKLDEHMR
QQAAEASSADRNLNVSAAKTPLDKRSMTLPLKSAGESTFGERASGRSGAG
GVPLTPLMAKLSVLALSETTPIEIQTPLTTSKVFPRRSSLKCEDAVDALA
ALTTAPAQPPGPIQPDGLQRTELYICGQQNMTLLLLMEEGTCQQQQVVQK
MFDICVAKFPHMESQLNQTLNVNVEGDNRDGSNYSFMCVDSKWDVLQRNG
PWNPLELNILESMHSIHSSGHHLTDLILRSNDSVYYGHKNGRTEFFYKEP
THQINGIPPPSDPIGNIQSRAKSRLERDHSYMLF*

FI02012.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11663-PA 862 GF11663-PA 24..862 1..834 4011 87.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21810-PA 857 GG21810-PA 28..857 4..834 4392 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20764-PA 874 GH20764-PA 31..874 1..834 3591 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
HPS4-PB 834 CG4966-PB 1..834 1..834 4339 100 Plus
HPS4-PA 858 CG4966-PA 25..858 1..834 4324 99.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20844-PA 875 GI20844-PA 32..875 1..834 3556 79.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16791-PA 874 GL16791-PA 30..874 4..834 3280 73.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18559-PA 874 GA18559-PA 27..874 1..834 3282 73.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21812-PA 858 GM21812-PA 25..858 1..834 4461 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11303-PA 857 GD11303-PA 25..857 1..834 4470 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20582-PA 869 GJ20582-PA 30..869 1..834 3550 79.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15664-PA 872 GK15664-PA 25..872 5..834 3645 81.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11887-PA 857 GE11887-PA 25..857 1..834 4403 97.5 Plus

FI02012.hyp Sequence

Translation from 121 to 2625

> FI02012.hyp
MAAKETMIVFVYDTECLTDEADDPISAVLYFHPSWVSDSQKVALCGQLMG
TSYFLKDCFFNPRILALQNGKFVLKEFGRFILAIGTDRNIGDQLLEHRAD
LLSSLLKFFHRDVQTLYAQYAAPPALNRRNLSEKLYHIFETYLPMLQRNG
NTFQNVPRLRMPKTASHIFLEAIQTLQSCQQTKGILGGAILYHNKVVASQ
LSDMVTKHLVLTDPLHIRTAAEQVTNHPEFHIPNGVQMLVVYLEHMQYRQ
LAGEAQRAQNLQMNTAQLTQNGMPFQYAKRKIKRDKSLIFTHIPEEEHAP
EQQGAVEQLPPARPKSMRPTHLPLRIKSMQSKELPESGIASINFDETDSY
PQFIGRTSVCNTPMTENKVLPVANVMSICANPEDEGKEEDIHNSNGKTHS
RRNSLKVDVEKFFQNFISNPNKQLTRRKSSADLQDALRAISKKLNNFTHG
LKTDVNRNGSGNGDVSSDSPDFIEDDDKITSRTISDPTYPVFNTNGQQIS
RSLFQQFLDQYRKLWGVASEQAHEDAELAALVAEFQEFNAEIQKLDEHMR
QQAAEASSADRNLNVSAAKTPLDKRSMTLPLKSAGESTFGERASGRSGAG
GVPLTPLMAKLSVLALSETTPIEIQTPLTTSKVFPRRSSLKCEDAVDALA
ALTTAPAQPPGPIQPDGLQRTELYICGQQNMTLLLLMEEGTCQQQQVVQK
MFDICVAKFPHMESQLNQTLNVNVEGDNRDGSNYSFMCVDSKWDVLQRNG
PWNPLELNILESMHSIHSSGHHLTDLILRSNDSVYYGHKNGRTEFFYKEP
THQINGIPPPSDPIGNIQSRAKSRLERDHSYMLF*

FI02012.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:16:03
Subject Length Description Subject Range Query Range Score Percent Strand
HPS4-PB 834 CG4966-PB 1..834 1..834 4339 100 Plus
HPS4-PA 858 CG4966-PA 25..858 1..834 4324 99.5 Plus