Clone FI02185 Report

Search the DGRC for FI02185

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:21
Well:85
Vector:pFlc-1
Associated Gene/TranscriptRh4-RA
Protein status:FI02185.pep: gold
Sequenced Size:1366

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Rh4 2008-12-18 5.12 accounting

Clone Sequence Records

FI02185.complete Sequence

1366 bp assembled on 2008-09-15

GenBank Submission: BT044485.1

> FI02185.complete
GTTAAGGCGTATCGGTTGGGAATCGGTTCGGTATCGGGTTGACCGATATG
GAGCCGTTGTGCAACGCCAGTGAACCGCCACTTCGCCCGGAAGCGCGGAG
CTCTGGCAACGGAGACTTACAGTTCCTCGGATGGAATGTGCCGCCGGATC
AGATTCAATACATTCCGGAGCACTGGCTGACCCAGCTGGAACCGCCCGCG
TCCATGCACTACATGCTGGGCGTCTTCTACATATTTCTCTTCTGCGCCTC
GACAGTGGGTAATGGCATGGTCATCTGGATCTTCAGCACATCCAAGTCGC
TGAGGACACCATCCAATATGTTCGTGCTGAATCTGGCCGTCTTCGATCTG
ATCATGTGCCTCAAGGCGCCGATCTTCATCTACAACAGCTTCCATCGAGG
ATTCGCCCTGGGCAATACCTGGTGCCAGATATTCGCCTCCATTGGCTCCT
ATTCGGGTATTGGTGCTGGTATGACGAACGCGGCCATAGGATACGATCGA
TACAATGTGATCACCAAGCCCATGAACCGCAACATGACCTTCACCAAGGC
GGTGATAATGAATATAATCATCTGGTTGTACTGCACACCGTGGGTTGTCC
TGCCGCTAACCCAGTTCTGGGATCGATTCGTGCCAGAGGGCTACCTCACG
TCCTGCTCCTTCGACTATCTTTCGGACAACTTTGACACCCGGTTGTTTGT
GGGCACCATCTTCTTTTTCAGCTTCGTGTGTCCCACGCTGATGATCCTTT
ACTACTACTCGCAGATCGTGGGCCATGTCTTCAGCCACGAAAAGGCCCTA
CGGGAGCAGGCCAAGAAAATGAACGTGGAGTCGCTGCGCTCCAATGTGGA
CAAGAGCAAGGAGACGGCGGAGATACGGATTGCGAAGGCGGCTATCACCA
TCTGCTTCCTGTTCTTCGTGTCGTGGACGCCCTACGGCGTAATGTCGCTG
ATCGGGGCATTCGGGGATAAGAGTCTGCTTACACCAGGAGCCACGATGAT
CCCGGCCTGCACCTGCAAACTGGTGGCGTGCATAGACCCATTCGTCTATG
CCATAAGTCACCCCAGATACCGCTTGGAGCTGCAGAAGCGCTGTCCCTGG
CTGGGAGTCAACGAAAAGTCTGGGGAGATCTCTTCGGCGCAGTCCACGAC
CACCCAGGAGCAGCAACAGACTACCGCTGCATAGAACCAAGGACAACTCT
ACTCTAAGACAACTGACCATGTAACATGAAATCCAAGGAAAAAGTATAAA
ATGCCGACAACGAAACTGTATAACATTAATTTTATAATTTGTAGTGTGAC
ATTCTTGAGTTTGAAATAAATAAATAGTAACTTATTGCAAACGAAGTAGA
AAAAAAAAAAAAAAAA

FI02185.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Rh4-RA 1862 Rh4-RA 508..1860 1..1353 6750 99.9 Plus
sina.b 3862 sina.b 1..499 1131..633 2495 100 Minus
sina.a 4364 sina.a 1..499 1131..633 2495 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16842029..16842745 1349..633 3570 99.9 Minus
chr3L 24539361 chr3L 16851374..16852009 636..1 3135 99.5 Minus
chr3R 27901430 chr3R 15905294..15906280 1118..132 1320 76 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:08:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16852523..16853243 1353..633 3590 99.9 Minus
3L 28110227 3L 16861882..16862517 636..1 3180 100 Minus
3R 32079331 3R 20081344..20082330 1118..132 1320 76 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16845623..16846343 1353..633 3590 99.8 Minus
3L 28103327 3L 16854982..16855617 636..1 3180 100 Minus
3R 31820162 3R 19822175..19822663 1118..630 1185 82.8 Minus
3R 31820162 3R 19822899..19823037 394..256 170 74.8 Minus
3R 31820162 3R 19823072..19823161 221..132 165 78.8 Minus
Blast to na_te.dros performed on 2019-03-16 21:15:33 has no hits.

FI02185.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:16:28 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16842029..16842741 637..1349 99 <- Minus
chr3L 16851374..16852009 1..636 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:40:10 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 1..1137 48..1184 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:09:17 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 1..1137 48..1184 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:44 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 1..1137 48..1184 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:01 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 1..1137 48..1184 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:48:24 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 508..1856 1..1349 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:09:17 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 508..1856 1..1349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:44 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 1..1349 1..1349 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 12:13:14 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 508..1856 1..1349 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:01 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
Rh4-RA 1..1349 1..1349 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:28 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16852527..16853239 637..1349 99 <- Minus
3L 16861882..16862517 1..636 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:28 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16852527..16853239 637..1349 99 <- Minus
3L 16861882..16862517 1..636 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:28 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16852527..16853239 637..1349 99 <- Minus
3L 16861882..16862517 1..636 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:44 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16845627..16846339 637..1349 99 <- Minus
arm_3L 16854982..16855617 1..636 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:05 Download gff for FI02185.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16845627..16846339 637..1349 99 <- Minus
3L 16854982..16855617 1..636 100   Minus

FI02185.pep Sequence

Translation from 47 to 1183

> FI02185.pep
MEPLCNASEPPLRPEARSSGNGDLQFLGWNVPPDQIQYIPEHWLTQLEPP
ASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFD
LIMCLKAPIFIYNSFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYD
RYNVITKPMNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYL
TSCSFDYLSDNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA
LREQAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMS
LIGAFGDKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCP
WLGVNEKSGEISSAQSTTTQEQQQTTAA*

FI02185.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10499-PA 380 GF10499-PA 1..380 1..378 1967 96.6 Plus
Dana\GF17335-PA 385 GF17335-PA 20..369 12..363 1432 74.1 Plus
Dana\GF14411-PA 382 GF14411-PA 6..373 11..378 884 45.6 Plus
Dana\GF23219-PA 381 GF23219-PA 10..379 3..374 634 39.5 Plus
Dana\GF17352-PA 373 GF17352-PA 26..373 30..377 580 39.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Rh4-PA 378 GG15846-PA 1..378 1..378 2032 99.5 Plus
Dere\Rh3-PA 383 GG15608-PA 18..383 12..378 1482 74.7 Plus
Dere\GG23755-PA 382 GG23755-PA 6..355 11..357 887 48 Plus
Dere\Rh2-PA 381 GG23078-PA 19..381 13..377 628 39.8 Plus
Dere\ninaE-PA 373 GG15786-PA 26..373 30..377 580 39.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17066-PA 383 GH17066-PA 8..365 4..360 1815 93 Plus
Dgri\GH23919-PA 382 GH23919-PA 17..382 12..378 1431 72.8 Plus
Dgri\GH13098-PA 391 GH13098-PA 21..375 15..371 876 46.8 Plus
Dgri\GH14493-PA 383 GH14493-PA 22..382 13..374 625 39.5 Plus
Dgri\GH23312-PA 373 GH23312-PA 26..373 30..377 587 39.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rh4-PA 378 CG9668-PA 1..378 1..378 2024 100 Plus
Rh3-PA 383 CG10888-PA 18..383 12..378 1459 74.2 Plus
Rh5-PB 382 CG5279-PB 16..355 18..357 879 48.2 Plus
Rh5-PA 382 CG5279-PA 16..355 18..357 879 48.2 Plus
Rh2-PA 381 CG16740-PA 19..376 13..371 630 39.8 Plus
ninaE-PA 373 CG4550-PA 27..373 31..377 586 39.7 Plus
Rh7-PA 483 CG5638-PA 105..420 43..370 547 35.5 Plus
Rh6-PC 362 CG5192-PC 20..362 27..377 523 36.1 Plus
TkR86C-PA 504 CG6515-PA 89..409 59..378 194 23 Plus
AkhR-PD 443 CG11325-PD 38..355 54..374 193 24.3 Plus
AkhR-PB 443 CG11325-PB 38..355 54..374 193 24.3 Plus
AkhR-PA 443 CG11325-PA 38..355 54..374 193 24.3 Plus
AkhR-PC 455 CG11325-PC 38..355 54..374 193 24.3 Plus
TkR86C-PB 555 CG6515-PB 89..376 59..347 193 23.9 Plus
PK2-R2-PB 599 CG8795-PB 50..352 40..342 183 22.5 Plus
PK2-R2-PA 599 CG8795-PA 50..352 40..342 183 22.5 Plus
Lkr-PA 542 CG10626-PA 31..332 50..348 176 23.3 Plus
RYa-R-PA 464 CG5811-PA 49..404 6..352 173 22.3 Plus
RYa-R-PC 467 CG5811-PC 49..404 6..352 173 22.3 Plus
RYa-R-PB 518 CG5811-PB 49..404 6..352 173 22.3 Plus
Octbeta1R-PB 421 CG6919-PB 116..417 63..347 162 23.2 Plus
Octbeta1R-PC 428 CG6919-PC 116..417 63..347 162 23.2 Plus
NPFR-PC 462 CG1147-PC 73..403 41..361 162 23.3 Plus
NPFR-PB 466 CG1147-PB 73..403 41..361 162 23.3 Plus
Octbeta1R-PE 508 CG6919-PE 116..417 63..347 162 23.2 Plus
Octbeta1R-PA 508 CG6919-PA 116..417 63..347 162 23.2 Plus
NPFR-PA 485 CG1147-PA 73..386 41..347 161 23.3 Plus
NPFR-PD 489 CG1147-PD 73..386 41..347 161 23.3 Plus
CCHa2-R-PB 477 CG14593-PB 70..355 55..337 160 22 Plus
CCHa2-R-PA 489 CG14593-PA 70..355 55..337 160 22 Plus
Dop1R2-PA 537 CG18741-PA 114..314 61..262 160 26.3 Plus
Dop1R2-PB 539 CG18741-PB 114..314 61..262 160 26.3 Plus
SIFaR-PC 758 CG10823-PC 206..502 52..342 160 23.1 Plus
SIFaR-PA 758 CG10823-PA 206..502 52..342 160 23.1 Plus
Dop1R2-PC 807 CG18741-PC 114..314 61..262 160 26.3 Plus
AstA-R2-PB 350 CG10001-PB 25..326 38..347 159 19.9 Plus
AstA-R2-PC 357 CG10001-PC 25..326 38..347 159 19.9 Plus
AstA-R2-PA 357 CG10001-PA 25..326 38..347 159 19.9 Plus
Octbeta3R-PJ 445 CG42244-PJ 118..420 28..342 159 22.6 Plus
TkR99D-PB 517 CG7887-PB 115..340 68..296 158 25.3 Plus
TkR99D-PA 519 CG7887-PA 115..340 68..296 158 25.3 Plus
TkR99D-PC 564 CG7887-PC 115..340 68..296 158 25.3 Plus
Octalpha2R-PC 670 CG18208-PC 120..331 59..273 158 25.1 Plus
Octalpha2R-PA 699 CG18208-PA 120..331 59..273 158 25.1 Plus
Octalpha2R-PB 740 CG18208-PB 120..331 59..273 158 25.1 Plus
AstC-R1-PA 483 CG7285-PA 82..390 59..371 157 20.4 Plus
AstC-R2-PE 549 CG13702-PE 150..432 59..349 155 17.7 Plus
AstC-R2-PB 549 CG13702-PB 150..432 59..349 155 17.7 Plus
AstC-R2-PD 567 CG13702-PD 150..432 59..349 155 17.7 Plus
AstC-R2-PF 593 CG13702-P2-RF 150..432 59..349 155 17.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11660-PA 384 GI11660-PA 8..384 3..378 1840 92.6 Plus
Dmoj\GI10051-PA 380 GI10051-PA 15..361 12..360 1426 74.8 Plus
Dmoj\GI14181-PA 389 GI14181-PA 20..384 15..377 877 45 Plus
Dmoj\GI22968-PA 384 GI22968-PA 22..382 13..374 634 39.5 Plus
Dmoj\GI10328-PA 373 GI10328-PA 26..373 30..377 588 39.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20699-PA 380 GL20699-PA 1..379 1..378 1958 96 Plus
Dper\GL12515-PA 382 GL12515-PA 17..367 12..364 1432 73.9 Plus
Dper\GL16118-PA 384 GL16118-PA 6..375 11..378 871 46.1 Plus
Dper\GL23439-PA 381 GL23439-PA 8..379 9..374 621 38.6 Plus
Dper\ninaE-PA 373 GL12414-PA 26..373 30..377 584 39.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Rh4-PA 380 GA28288-PA 1..379 1..378 1963 96.3 Plus
Dpse\Rh3-PA 398 GA10619-PA 33..383 12..364 1430 73.9 Plus
Dpse\GA18781-PA 384 GA18781-PA 6..375 11..378 869 46.1 Plus
Dpse\Rh2-PA 381 GA14120-PA 8..379 9..374 620 38.6 Plus
Dpse\ninaE-PA 373 GA18249-PA 26..373 30..377 584 39.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24362-PA 378 GM24362-PA 1..378 1..378 2039 100 Plus
Dsec\GM17694-PA 383 GM17694-PA 18..383 12..378 1484 74.7 Plus
Dsec\GM17893-PA 381 GM17893-PA 19..381 13..377 621 39.6 Plus
Dsec\GM26888-PA 373 GM26888-PA 26..373 30..377 577 39.4 Plus
Dsec\GM24238-PA 369 GM24238-PA 20..369 27..377 544 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12438-PA 378 GD12438-PA 1..378 1..378 2039 100 Plus
Dsim\GD23807-PA 382 GD23807-PA 6..370 11..377 887 45.9 Plus
Dsim\GD20079-PA 236 GD20079-PA 18..232 12..228 752 63.6 Plus
Dsim\GD19254-PA 381 GD19254-PA 19..381 13..377 622 39.6 Plus
Dsim\GD20080-PA 136 GD20080-PA 10..136 253..378 588 87.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Rh4-PA 383 GJ11339-PA 7..364 4..360 1839 94.1 Plus
Dvir\Rh3-PA 381 GJ23441-PA 15..361 12..360 1429 75.1 Plus
Dvir\GJ23786-PA 380 GJ23786-PA 15..361 12..360 1427 75.1 Plus
Dvir\GJ17505-PA 391 GJ17505-PA 23..382 18..378 855 45.2 Plus
Dvir\Rh2-PA 379 GJ14545-PA 17..379 13..377 617 38.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Rh4-PA 380 GK13877-PA 5..380 4..378 1961 96.3 Plus
Dwil\Rh3-PA 388 GK22792-PA 23..372 12..363 1442 75 Plus
Dwil\GK23748-PA 397 GK23748-PA 28..385 16..369 871 46.1 Plus
Dwil\Rh2-PA 375 GK22745-PA 4..373 3..374 633 40.3 Plus
Dwil\ninaE-PA 373 GK22808-PA 26..373 30..377 574 39.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22185-PA 378 GE22185-PA 1..378 1..378 2034 99.5 Plus
Dyak\GE25087-PA 383 GE25087-PA 18..383 12..378 1484 74.7 Plus
Dyak\GE18562-PA 382 GE18562-PA 6..370 11..377 889 46.2 Plus
Dyak\GE25563-PA 381 GE25563-PA 19..381 13..377 624 39.8 Plus
Dyak\GE25107-PA 373 GE25107-PA 26..373 30..377 580 39.7 Plus

FI02185.hyp Sequence

Translation from 47 to 1183

> FI02185.hyp
MEPLCNASEPPLRPEARSSGNGDLQFLGWNVPPDQIQYIPEHWLTQLEPP
ASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFD
LIMCLKAPIFIYNSFHRGFALGNTWCQIFASIGSYSGIGAGMTNAAIGYD
RYNVITKPMNRNMTFTKAVIMNIIIWLYCTPWVVLPLTQFWDRFVPEGYL
TSCSFDYLSDNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA
LREQAKKMNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMS
LIGAFGDKSLLTPGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCP
WLGVNEKSGEISSAQSTTTQEQQQTTAA*

FI02185.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rh4-PA 378 CG9668-PA 1..378 1..378 2024 100 Plus
Rh3-PA 383 CG10888-PA 18..383 12..378 1459 74.2 Plus
Rh5-PB 382 CG5279-PB 16..355 18..357 879 48.2 Plus
Rh5-PA 382 CG5279-PA 16..355 18..357 879 48.2 Plus
Rh2-PA 381 CG16740-PA 19..376 13..371 630 39.8 Plus