Clone FI02818 Report

Search the DGRC for FI02818

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:28
Well:18
Vector:pFlc-1
Associated Gene/Transcriptskl-RA
Protein status:FI02818.pep: gold
Sequenced Size:1391

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
skl 2008-08-15 Release 5.9 accounting
skl 2008-12-18 5.12 accounting

Clone Sequence Records

FI02818.complete Sequence

1391 bp assembled on 2008-08-11

GenBank Submission: BT044109.1

> FI02818.complete
AGTCGTACGACAACTCGCCAAGAGTTCAGATCTGGAAAATCAGGAAATAC
CTTGCCACACATCGAAGTTAACAAGTGCCATTTTTACGTAACATTTTGAG
CGACTCAAATATGGCCATTCCATTTTTCGAAGAAGAGCACGCCCCGAAAT
CGGAACCCAGTGGCGATCAAGTCGATAGCCCCATGGCTTTCTCCATAGAC
CCCGGACATGATCAAGTGGACTTTGAAGGACCTCCGTCTGCAGCAGAGGA
ACTCCCGCCACCAGGAGCAACAAGTGAGCCAGTTGCGCCTCCGAGTGCCG
AGGAGCAACTGCTGGCCTGGAAATTCCTGGCCATCACCATGTGCAAGGTC
CTGAAGCAATTTTACCAACAGCACAAGTCGTCCGGAAAATCCAGCAAACT
AAAGGCCACCGTTCAAATACAACCGCAGGCGCAGTAAAAATTTCGAAAAC
CAACTTAAGCACCAACTAAGGCTCCTAAAAGCGCAACTTGTGATTACTTT
ACGTTGGTGAGAACTAGCGCAGCCCGAAAATTTCGAGAGAGAATGAGCGA
GACAGTGACAGAGAAATGTGAATCAATTTCCCAAGGAAAACCCTAAAACA
AGATTAACTTTTGATACATGTATTTTCTTTGCTGGAAATTAAGCACATAG
TTTCTTATCCGTCGGGATACAACAAAATTTTAAAACTTTGGATAAGCGCA
AATGTGATAAATAATTTTGCTAAAAAAATTTACAGTCCAAGTATTTGTTT
AGTAAACTTATTTAAGTTAGTTTTACTTGTTTAACTGAATAAGTTAGATT
CTCGTAGGTGGTCGGCCCAGTGCAAGAATAAGTGAACGAAAAATCCAAAC
ATTCATATATTGGAAAATTGTCTCAAGAGATAAAAGCAAAATTTTGTAAG
CAGTCGCTAGTTTTCAAATCGAAACCAACTTAGTTGATAAGTCAAACTAT
TCTACATGCTATAACTACAAATAGTTACAACTTTTTTACCAACAACTCTC
TTGGTGTCTATTTATGGGGAAATTTAAATGATTCAACTTCCTAGGTAGAG
TGCTTCTTAAACTTAGCAAATATATATGGAAATATATTTTTTAAAATTGA
AACATATTTTTATATTTACTTTGCCGTCGATATATAAGCTGTGTACGTGT
CAATCTAGTTTATAGATCTATTCTTATAAGCAATATGTGGCTAAGATTCC
ATGCGAAATAAATCGATGAAAAGGCGTTCTTCGCGTAACGAGCATAAACA
TAGTACAAGTTCAAAAGTAGAAATATTTACACACATAAATACTCCAAACT
ACACATTCTTTTAAGCAATTTAATGTAACTTACGCTAAGTAAAGCAAATG
GCATGAAATAAAAATATTATTGAATGGAAAAAAAAAAAAAA

FI02818.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
skl-RA 1382 skl-RA 1..1382 1..1382 6895 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18428110..18429486 1377..1 6870 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:08:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18438556..18439937 1382..1 6895 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18431656..18433037 1382..1 6895 99.9 Minus
Blast to na_te.dros performed 2019-03-16 05:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 389..514 1244..1371 111 60.3 Plus

FI02818.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:04:59 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18428110..18429486 1..1377 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:40:36 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..327 111..437 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:09:25 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..327 111..437 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:05:32 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..327 111..437 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:07 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..327 111..437 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:56:13 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..327 111..437 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:48:36 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..1377 1..1377 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:09:25 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..1377 1..1377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:05:32 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 6..1382 1..1377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:29:13 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 1..1377 1..1377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:56:13 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
skl-RA 6..1382 1..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:04:59 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18438561..18439937 1..1377 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:04:59 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18438561..18439937 1..1377 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:04:59 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18438561..18439937 1..1377 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:05:32 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18431661..18433037 1..1377 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:15 Download gff for FI02818.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18431661..18433037 1..1377 99   Minus

FI02818.hyp Sequence

Translation from 110 to 436

> FI02818.hyp
MAIPFFEEEHAPKSEPSGDQVDSPMAFSIDPGHDQVDFEGPPSAAEELPP
PGATSEPVAPPSAEEQLLAWKFLAITMCKVLKQFYQQHKSSGKSSKLKAT
VQIQPQAQ*

FI02818.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
skl-PA 108 CG13701-PA 1..108 1..108 567 100 Plus

FI02818.pep Sequence

Translation from 110 to 436

> FI02818.pep
MAIPFFEEEHAPKSEPSGDQVDSPMAFSIDPGHDQVDFEGPPSAAEELPP
PGATSEPVAPPSAEEQLLAWKFLAITMCKVLKQFYQQHKSSGKSSKLKAT
VQIQPQAQ*

FI02818.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10820-PA 115 GF10820-PA 1..115 1..108 371 74.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15744-PA 108 GG15744-PA 1..108 1..108 400 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17113-PA 116 GH17113-PA 1..116 1..108 222 54.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
skl-PA 108 CG13701-PA 1..108 1..108 567 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11718-PA 129 GI11718-PA 1..129 1..108 221 47.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22705-PA 115 GL22705-PA 1..115 1..108 255 57.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12469-PB 123 GA12469-PB 1..123 1..108 226 51.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14942-PA 108 GM14942-PA 1..108 1..108 531 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11392-PA 120 GJ11392-PA 1..120 1..108 282 52.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11549-PA 144 GK11549-PA 1..144 1..108 203 44.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22076-PA 110 GE22076-PA 1..110 1..108 428 87.3 Plus