Clone FI02878 Report

Search the DGRC for FI02878

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:28
Well:78
Vector:pFlc-1
Associated Gene/TranscriptSu(P)-RA
Protein status:FI02878.pep: gold
Sequenced Size:1427

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Su(P) 2008-08-15 Release 5.9 accounting
Su(P) 2008-12-18 5.12 accounting

Clone Sequence Records

FI02878.complete Sequence

1427 bp assembled on 2008-08-06

GenBank Submission: BT044124.1

> FI02878.complete
GACACTGGTCTCATAGTCGCGGCTGATAAGTCGCTAATTTTTGCATAATA
TTAAGTATAAGTCAAAACAAACGTGCGAATTATGTCATGTATTCGGCTAG
CGTCTGCCACCGTTCTGGCAGGGGTCCGTCCCCCGCCGGCAGCAAGCGGA
GGTGGAGCCTTGCGCCTGTTGACTAAACGGAATCCGGATGCTGCATTCGC
ACGCCGCCAGTTTGCTGTAGCGGTTGAAAACGGCGGAGGCAGAAAGAAGC
CGAATGGAACTTTCAAGCTCGCAGTTTTGGGGGCCACCGTAGGCGCGGCC
ACCGGATCGGTGTATACGATGTACCAGCGGTGGACAGACGGCAGCTCGCA
CAAAGAGCACGAGGAGACGAAGCCGACGCGGCTGGACGGGATTCCGGCTG
GAGTGCGGATAACCAAGCGCTATGTCAACCCCAAGGACACGTCCGGTTTG
GACATTGTGCTGTTCCAGTTCCAGACGTGTCCCTTCTGTTGCAAGGTGCG
CGCTTTCCTCGACTACATGGGCATATCCTATGCGGTGGTCGAAGTGGATG
CCGTCCTACGGCAGGACATCCGCTGGTCGTCGGTGAAGAAGGTGCCGATG
GTGCTCATCCGACAGCAGGACGGCAAATACGTCCAGATGGTGGACTCAAG
TGCCATCATATCCCTTATAGCCACCCACCTGCAGGACAAGCGCACCGACA
TCGGCGAGCTGGCACAGTTCTATCCGCACACCTCCTTCTTCGACGATGAT
GGCAAAAAGAAGAACGACATATTGAATAAATACTTCCTCATGTACCGCGA
GCATACGCCCAAGGGAGTATCCAAGGAAACGGATGAAACCGATCGCAAGT
GGAGAAGCTGGGCCGACAGCCACTTGGTGCATCTAATATCGCCCAACTGT
TATCAGACCATGGGCGAGTCCCTAGAGACTTTTGAGTGGTTCTCGCAAGC
TGGCGAGTGGGACGTTCACTTCCCCAAATGGGAGCGCGACCTGATGGTTT
ACTGTGGTGCCACCGCCATGTGGGCCATAGCCAAGATGCTGAAGCGCCGT
CACGCCCTCAGCGACGACGTCAGGTCGCACATGTACGATGCCCTTGACCA
GTGGACCACTGAGCTGAAAAAGAGGAACACGAAATTCATGGGCGGAAAAC
AGCCAAGTCTGGCTGATCTATCGGTTTTCGGCGTGCTTTCAAGCATGGAG
GGGTGTCAGACGTTCAAGGATTGTCTGCAAAACACCAGCATCGGTAAATG
GTTTTATGACGTCAAGGCGTTGGTGGAGAAGAATCGTGGGCAGTTGCAAA
GAGAACGTATTGAAAACATGGCCGCTATAGCTTAAAACAAATATTTGCCC
TTATTTTATCCAAAGATTGTTGAAAATAACCGAAATGTTCATTAAAATAT
ACATTTTAATCAAAAAAAAAAAAAAAA

FI02878.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
Su(P)-RA 1655 Su(P)-RA 96..1508 2..1414 7065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16601106..16601940 836..2 4175 100 Minus
chr3L 24539361 chr3L 16600629..16601041 1249..837 2065 100 Minus
chr3L 24539361 chr3L 16600436..16600513 1411..1334 390 100 Minus
chr3L 24539361 chr3L 16600514..16600573 1302..1243 300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:09:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16611363..16612197 836..2 4175 100 Minus
3L 28110227 3L 16610886..16611298 1249..837 2065 100 Minus
3L 28110227 3L 16610659..16610830 1414..1243 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16604463..16605297 836..2 4175 100 Minus
3L 28103327 3L 16603986..16604398 1249..837 2065 100 Minus
3L 28103327 3L 16603759..16603930 1414..1243 860 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:17:33 has no hits.

FI02878.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:23 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16600635..16601041 837..1243 100 <- Minus
chr3L 16600436..16600513 1334..1411 100 == Minus
chr3L 16600514..16600572 1244..1302 100 <- Minus
chr3L 16601106..16601940 1..836 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:41:43 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1254 82..1335 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:26:54 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1254 82..1335 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:58 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1254 82..1335 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:17:58 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1254 82..1335 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:56 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1254 82..1335 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:55:36 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1410 2..1411 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:26:54 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1410 2..1411 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:58 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 2..1412 1..1411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-06 16:49:16 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 1..1410 2..1411 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:56 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
Su(P)-RA 2..1412 1..1411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:23 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16610662..16610829 1244..1411 100 <- Minus
3L 16610892..16611298 837..1243 100 <- Minus
3L 16611363..16612197 1..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:23 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16610662..16610829 1244..1411 100 <- Minus
3L 16610892..16611298 837..1243 100 <- Minus
3L 16611363..16612197 1..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:23 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16610662..16610829 1244..1411 100 <- Minus
3L 16610892..16611298 837..1243 100 <- Minus
3L 16611363..16612197 1..836 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:58 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16603762..16603929 1244..1411 100 <- Minus
arm_3L 16603992..16604398 837..1243 100 <- Minus
arm_3L 16604463..16605297 1..836 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:53:37 Download gff for FI02878.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16603762..16603929 1244..1411 100 <- Minus
3L 16603992..16604398 837..1243 100 <- Minus
3L 16604463..16605297 1..836 99   Minus

FI02878.hyp Sequence

Translation from 81 to 1334

> FI02878.hyp
MSCIRLASATVLAGVRPPPAASGGGALRLLTKRNPDAAFARRQFAVAVEN
GGGRKKPNGTFKLAVLGATVGAATGSVYTMYQRWTDGSSHKEHEETKPTR
LDGIPAGVRITKRYVNPKDTSGLDIVLFQFQTCPFCCKVRAFLDYMGISY
AVVEVDAVLRQDIRWSSVKKVPMVLIRQQDGKYVQMVDSSAIISLIATHL
QDKRTDIGELAQFYPHTSFFDDDGKKKNDILNKYFLMYREHTPKGVSKET
DETDRKWRSWADSHLVHLISPNCYQTMGESLETFEWFSQAGEWDVHFPKW
ERDLMVYCGATAMWAIAKMLKRRHALSDDVRSHMYDALDQWTTELKKRNT
KFMGGKQPSLADLSVFGVLSSMEGCQTFKDCLQNTSIGKWFYDVKALVEK
NRGQLQRERIENMAAIA*

FI02878.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Su(P)-PA 417 CG4086-PA 1..417 1..417 2209 100 Plus

FI02878.pep Sequence

Translation from 81 to 1334

> FI02878.pep
MSCIRLASATVLAGVRPPPAASGGGALRLLTKRNPDAAFARRQFAVAVEN
GGGRKKPNGTFKLAVLGATVGAATGSVYTMYQRWTDGSSHKEHEETKPTR
LDGIPAGVRITKRYVNPKDTSGLDIVLFQFQTCPFCCKVRAFLDYMGISY
AVVEVDAVLRQDIRWSSVKKVPMVLIRQQDGKYVQMVDSSAIISLIATHL
QDKRTDIGELAQFYPHTSFFDDDGKKKNDILNKYFLMYREHTPKGVSKET
DETDRKWRSWADSHLVHLISPNCYQTMGESLETFEWFSQAGEWDVHFPKW
ERDLMVYCGATAMWAIAKMLKRRHALSDDVRSHMYDALDQWTTELKKRNT
KFMGGKQPSLADLSVFGVLSSMEGCQTFKDCLQNTSIGKWFYDVKALVEK
NRGQLQRERIENMAAIA*

FI02878.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10514-PA 415 GF10514-PA 1..415 1..416 1918 85.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Su(P)-PA 418 GG15865-PA 1..418 1..417 2156 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16457-PA 412 GH16457-PA 1..405 1..410 1729 75.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
Su(P)-PA 417 CG4086-PA 1..417 1..417 2209 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16712-PA 413 GI16712-PA 11..412 20..417 1620 72.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12723-PA 245 GL12723-PA 1..242 173..414 1163 85.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17946-PA 419 GA17946-PA 1..416 1..414 1752 77.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24381-PA 418 GM24381-PA 1..418 1..417 2222 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Su(P)-PA 418 GD12454-PA 1..418 1..417 2216 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12456-PA 415 GJ12456-PA 1..415 1..417 1712 74 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20317-PA 418 GK20317-PA 1..408 1..411 1676 74 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22204-PA 418 GE22204-PA 1..418 1..417 2144 95 Plus