Clone FI02885 Report

Search the DGRC for FI02885

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:28
Well:85
Vector:pFlc-1
Associated Gene/TranscriptT3dh-RA
Protein status:FI02885.pep: gold
Sequenced Size:1961

Clone Sequence Records

FI02885.complete Sequence

1961 bp assembled on 2009-03-09

GenBank Submission: BT072927.1

> FI02885.complete
GCTTTATATACAGAATGTCGCGGAAGAATGTCTTAGGTTTGATCAACACG
ATCGTGGCCAACTCCTGCAAGTGCCCCGCCCATTCGCATAACTATGGCTC
AGCAGCTCCAACCGCCTCCCAAACGGGTCGCATGGAATACGCCTTCGAGA
TGTCAGCCTCGACTGTTCGATTTGGACCGGGAGTAAGTGCCGAAGTGGGA
GCCGATCTTCGCAACTTGGGAGCTCGGAAGGTTTGTTTGGTCACGGATAA
AAATGTCGTGCAATTGCCCTCCGTGAAAGTGGCCTTGGATTCACTGGCTC
GTAATGGCATCAACTACGAAGTCTATGATGAAACCCGGGTGGAGCCCACG
GATGGGAGCATGTGGCATGCCGTGGAGTTTGCGCGCGGCAAGGAGTTCGA
TGCATTTCTGGCCATCGGAGGAGGATCTGCCATGGATACAGCCAAGGCAG
CTAATCTTTTTAGCAGTGATGCAAATGCAGAGTTTTTGGATTATGTAAAC
TGCCCAATTGGCAGAGGCAAGGAGATATCCGTAAAACTGAAGCCCCTGAT
TGCGATGCCCACCACTTCGGGAACAGGTTCCGAAACCACTGGAGTAGCTA
TATTTGATTACAAGAAGTTGCATGCCAAAACTGGGATTTCCAGCAAGTTC
CTCAAACCTACTTTGGCTGTGATTGATCCTCTGCACACCCTATCCCAGCC
GCAACGCGTGATGGCTTTCGCTGGCTTTGATGTGTTCTGCCATGCCCTGG
AGAGTTTCACGGCGGTGGATTACAGGGAACGCGGTTTGGCGCCCAGTGAT
CCCAGCTTGAGACCCACCTACCAGGGCAGGAACCCAGTGTCGGATGTGTG
GGCACGATTCGCATTGGAGACGATAAGGAAAAACTTTGTGAACGCCATTT
ACCAGCCCGATAACCTAGAAGCCCGATCCCAGATGCACCTGGCTTCCACA
ATGGCTGGCGTGGGATTTGGTAATGCCGGAGTGCACCTGTGTCATGGCCT
TTCCTATCCTATTTCTGGAAATGTGAGGGATTACAAGCCAAAGGGCTACT
CCGCGGATCACGCTCTTATTCCACACGGCCTATCCGTGGTGATCAGTGCT
CCGGCGGTCTTTGAGTTCACTGCTCCAGCTTGTCCGGATCGGCATTTGGA
GGCTGCCCAGTTGCTGGGCGCAGAAGTGCGAGGTGTCGAAAAAGCAGACG
CCGGTCGTCTTTTGGCGGACACTGTACGCGGTTTTATGCAACGCGCGGGC
ATAGAAAATGGCCTCCGAGAGCTGGGATTCTCCAGCAGCGATATACCCGC
CTTGGTGGAGGGAACCCTGCCCCAGGAAAGGATCACTAAGCTAGCACCCA
GGGCGCAGACGCAGGAAAACCTGTCGCAACTCTTTGAGAAGTCCATGGAG
GTCTATTAATTTGGAGCCAAAACTTACCCACGCTCAACTTGTTCTCTTGA
AGAAAAAAAAATGTTAAACTAACGGATCTTCGTTTAAGATCTGACCATAC
TTGAGCTTTCAAAATTCTATTTTTTTTAAGCGTATAAAAAGCTTAGAGTG
AACCATTTAATTTTGGTTGGACTTGTGTATATACGAAAAATACCATTAAA
AACCCTATACAGAATCACAGGAAATTTGATGCCCTGCTTGATTTTTGTTT
ACTTTATGTTCTTTGTCGCAATGGATCTTATGTACATTCAGCATTATTTT
GTGGCCTCTTTTTTGGTCTGCACTTCGTTTGAGAATCCTCTACTCAGTTT
GCTTTCCTAAGCTGCAGGAAGAAGACCGACGCTGGGACCAAAAATACTAT
GATATAAGATATTAATATTAATATAATATCATACAAATCATACATGATAT
CATATCATTAAAACAAAAAAAAAAGGATTAAATCCTACAAATTAGTTGCT
CCAAAAAAAGCTTGTAATTTTTGTAATTATAATATATTTTAGACCAAAAA
AAAAAAAAAAA

FI02885.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
T3dh-RA 1950 T3dh-RA 8..1949 3..1944 9710 100 Plus
pgc-RA 1173 pgc-RA 1..523 1425..903 2615 100 Minus
pgc-RC 741 pgc-RC 1..91 1518..1428 455 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18216296..18217569 1944..666 6045 98.7 Minus
chr2R 21145070 chr2R 18217822..18218198 524..148 1840 99.2 Minus
chr2R 21145070 chr2R 18217626..18217769 666..523 720 100 Minus
chr2R 21145070 chr2R 18218414..18218498 149..65 410 98.8 Minus
chr2R 21145070 chr2R 18218561..18218622 64..3 310 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:09:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22329727..22331005 1944..666 6395 100 Minus
2R 25286936 2R 22331258..22331634 524..148 1885 100 Minus
2R 25286936 2R 22331062..22331205 666..523 720 100 Minus
2R 25286936 2R 22331848..22331932 149..65 425 100 Minus
2R 25286936 2R 22331995..22332056 64..3 310 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22330926..22332204 1944..666 6395 100 Minus
2R 25260384 2R 22332457..22332833 524..148 1885 100 Minus
2R 25260384 2R 22332261..22332404 666..523 720 100 Minus
2R 25260384 2R 22333047..22333131 149..65 425 100 Minus
2R 25260384 2R 22333194..22333255 64..3 310 100 Minus
Blast to na_te.dros performed 2019-03-16 00:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2496..2622 1813..1943 122 59.1 Plus

FI02885.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:00:20 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18216295..18217568 667..1945 97 <- Minus
chr2R 18217626..18217767 525..666 100 <- Minus
chr2R 18217822..18218196 150..524 99 <- Minus
chr2R 18218414..18218498 65..149 98 <- Minus
chr2R 18218561..18218622 1..64 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:07:20 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 1..1395 15..1409 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:38:46 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 1..1395 15..1409 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:59:57 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 1..1395 15..1409 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:18:53 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 1..1395 15..1409 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-18 11:19:37 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 2..1943 3..1945 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:38:46 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 2..1943 3..1945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:59:57 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 14..1958 1..1945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:18:53 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
T3dh-RA 14..1958 1..1945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:20 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22331062..22331203 525..666 100 <- Minus
2R 22329726..22331004 667..1945 99 <- Minus
2R 22331258..22331632 150..524 100 <- Minus
2R 22331848..22331932 65..149 100 <- Minus
2R 22331995..22332056 1..64 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:20 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22331062..22331203 525..666 100 <- Minus
2R 22329726..22331004 667..1945 99 <- Minus
2R 22331258..22331632 150..524 100 <- Minus
2R 22331848..22331932 65..149 100 <- Minus
2R 22331995..22332056 1..64 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:20 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22331062..22331203 525..666 100 <- Minus
2R 22329726..22331004 667..1945 99 <- Minus
2R 22331258..22331632 150..524 100 <- Minus
2R 22331848..22331932 65..149 100 <- Minus
2R 22331995..22332056 1..64 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:59:57 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18217231..18218509 667..1945 99 <- Minus
arm_2R 18218567..18218708 525..666 100 <- Minus
arm_2R 18218763..18219137 150..524 100 <- Minus
arm_2R 18219353..18219437 65..149 100 <- Minus
arm_2R 18219500..18219561 1..64 96   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:12:44 Download gff for FI02885.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22330925..22332203 667..1945 99 <- Minus
2R 22332261..22332402 525..666 100 <- Minus
2R 22332457..22332831 150..524 100 <- Minus
2R 22333047..22333131 65..149 100 <- Minus
2R 22333194..22333255 1..64 96   Minus

FI02885.pep Sequence

Translation from 2 to 1408

> FI02885.pep
FIYRMSRKNVLGLINTIVANSCKCPAHSHNYGSAAPTASQTGRMEYAFEM
SASTVRFGPGVSAEVGADLRNLGARKVCLVTDKNVVQLPSVKVALDSLAR
NGINYEVYDETRVEPTDGSMWHAVEFARGKEFDAFLAIGGGSAMDTAKAA
NLFSSDANAEFLDYVNCPIGRGKEISVKLKPLIAMPTTSGTGSETTGVAI
FDYKKLHAKTGISSKFLKPTLAVIDPLHTLSQPQRVMAFAGFDVFCHALE
SFTAVDYRERGLAPSDPSLRPTYQGRNPVSDVWARFALETIRKNFVNAIY
QPDNLEARSQMHLASTMAGVGFGNAGVHLCHGLSYPISGNVRDYKPKGYS
ADHALIPHGLSVVISAPAVFEFTAPACPDRHLEAAQLLGAEVRGVEKADA
GRLLADTVRGFMQRAGIENGLRELGFSSSDIPALVEGTLPQERITKLAPR
AQTQENLSQLFEKSMEVY*

FI02885.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13025-PA 464 GF13025-PA 1..464 5..468 2265 92.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20700-PA 464 GG20700-PA 1..464 5..468 2319 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20091-PA 464 GH20091-PA 1..464 5..468 2048 82.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
T3dh-PA 464 CG3425-PA 1..464 5..468 2389 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18989-PA 464 GI18989-PA 1..464 5..468 2075 84.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16930-PA 464 GL16930-PA 1..464 5..468 2205 89.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17444-PA 464 GA17444-PA 1..464 5..468 2205 89.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15646-PA 464 GM15646-PA 1..464 5..468 2418 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25134-PA 464 GD25134-PA 1..464 5..468 2431 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19950-PA 464 GJ19950-PA 1..464 5..468 2082 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20828-PA 463 GK20828-PA 1..463 5..468 2089 85.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11684-PA 464 GE11684-PA 1..464 5..468 2412 96.8 Plus

FI02885.hyp Sequence

Translation from 2 to 1408

> FI02885.hyp
FIYRMSRKNVLGLINTIVANSCKCPAHSHNYGSAAPTASQTGRMEYAFEM
SASTVRFGPGVSAEVGADLRNLGARKVCLVTDKNVVQLPSVKVALDSLAR
NGINYEVYDETRVEPTDGSMWHAVEFARGKEFDAFLAIGGGSAMDTAKAA
NLFSSDANAEFLDYVNCPIGRGKEISVKLKPLIAMPTTSGTGSETTGVAI
FDYKKLHAKTGISSKFLKPTLAVIDPLHTLSQPQRVMAFAGFDVFCHALE
SFTAVDYRERGLAPSDPSLRPTYQGRNPVSDVWARFALETIRKNFVNAIY
QPDNLEARSQMHLASTMAGVGFGNAGVHLCHGLSYPISGNVRDYKPKGYS
ADHALIPHGLSVVISAPAVFEFTAPACPDRHLEAAQLLGAEVRGVEKADA
GRLLADTVRGFMQRAGIENGLRELGFSSSDIPALVEGTLPQERITKLAPR
AQTQENLSQLFEKSMEVY*

FI02885.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
T3dh-PA 464 CG3425-PA 1..464 5..468 2389 100 Plus