![]() | BDGP Sequence Production Resources |
Search the DGRC for FI02888
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 28 |
Well: | 88 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Lig4-RA |
Protein status: | FI02888.pep: gold |
Sequenced Size: | 3053 |
3053 bp assembled on 2009-01-14
GenBank Submission: BT057979.1
> FI02888.complete GACATTGCTTGAACAGATGTTCACAGTGATGAAATTGTTTACAACAGTAT ATTGTTTTTAAACAACAAAATGAGCGTAGATATAGCCAGCACGATCAAGT TCCGGGATATTTGCAGCCTGTTCGAGAAGATTAAGGCCACGCAAAAGGTG GCTAACAAGGAGGAGGTCCTCAAGAGCTACTACGAGTCCTTCTGTCGCCA CCGCGAATCCTTTCGCCGGCAAACCGGATTAAACAACGACCAGCCGGAGG ACGGTGCCAGTAGCTTCTATTCCGTGCTGCGACTGCTGCTTCCGGGTGCG GACACTGGTCGGGATACCTATGGATTGCAGATCACCGCGCTGGGCAGGCT CTACATCAGGGTGCTCCAGCTACCCACGGACTCCAGCGATGCCATCAGGC TGCAGCACCGCAACGGAAACATGTACCGGGACTACGGTGATGTTGTTTAT TCCGTGCTTAAGCCAAGGTGCTTTAATCCGCCCAGCAATTTGAGACTGAA AGAAATCCATCAGATGCTGGACACCATTGCCAACGAGGACACAGAAGTTA AGCAGCAGCAACTCATCCGGTTTACGGAGCAGGCCTCGCCTGAGGAACAG AAGTGGCTAATTCGGTTGCTGCTTAAGAGCCTCGGGCTGGGGATCGGTGA GCAAAAGATTTTCGGTGTGCTGCACCCCAAGGCGCAGGATATCTACCAGC GCTGCTCCGATCTGGGACATGTGTGCAATCTGCTGGCAGACCGAACCACC GACCTAGACGCCAGCAGCAGCAAGGACAGCAAGGCGGCGGTCAAGTTTGT AAACCTGAATTCCGTCATACGGCCATTCCACCAGATACGTCCCATGCTGT GCGAACGATTCCCCGGTGACATCCAGGAGCTGATGCAGTCGGATGTGCTC TATCTGGAGACCAAAATGGATGGCGAACGCTTTCAGCTGCACATCGATCG GGGTCGTTTCATGTACATTTCCCGCAATGGAGTGGACTACACCAGAAACT TTGGTCACAGCTACGATCACGGCACCTTAACGCCAAAGCTGAGGGGACTT CTGCCGCTGGGTCTGGAGTCTATCATACTCGACGGCGAGATGATGGTGTG GGATACCAACAAACTGCGCTTTCGGGAAAAAGGCGAGAATACGGACGTGA AGAGCCTGAAGCCGGAGGGCAGCTGGCAGCCATGTTTCGTGGTGTACGAT CTGCTATATTTTAATGGCCAGAGTCTGCTGGACCATACCTACATTCAGCG GGCGTACAAATTGCAGAAACTCATAGTTGAACAGTCGGGTGTGCTGCAGT TGATGCGTGCACGCAAAATCGGTTCCGTTCAAGAGTTCAACGAGCTGTTC CAGCAGGCACTCGACTCCCACGCCGAGGGCATTGTGCTAAAGAAGCAGGG ATCAAGATATCAGCCTGGCGTTAGACTGGGCGGTGGGTGGTACAAGGACA AGGCTGATTACATCAAAGGGCTGATCACCGAGTTCGATGTGCTGATCATC GGGGCATTCTACAATCGCAAGCGCACCTTTGTGGACTCATTTTTACTGGG CGTTCTCCAGCCGGCGCCGCCAGGCAGCTCTAATCGTCCCGAAGTCTTCA GTATTGGAGTGGTTGCCAACAATACGAAACAGCGCGGAGTGCTAAATCAC ACACTGAAACCACATTGGCATGATGTAGTCAATGAGCCACCGCCATTGTG GTTTCACTACAAGCCCAAGGAGAGGTCCGGATGCCCCGATCTGTGGATTG AACCGCAGAACTCGGTAATTTTGCAGGTGAAAGCTGCTGATCTGGCGCCC AATGGAGCATTTTTCACCCGAAAATCGTTGCACTTTCCGCGCACTGAGAT GAAACGGGATGATAAGACCTGGAGCGAGTGTATGACACTTAAGGAGTTTA ACGATCTCTGCGGAGGTCCTTTGGCCATCAAGAAGTTAAACAAGCGGCAA CTGCGACTAGAGGATGTGACCACCAAGCGGAAACAGATGCGTATGACGCC CTCGGAGCGAAGCCGACTGGGATTGGCCGTCTATGAGAAGCGCTATGACG CTAGCACCTCCGCTAGCACTTCCAAACTTTTCGACGGTCTGAGCTTTTGC ATTCTGAGCGGATCTGCCGGACGACACAGCAAGCATCAGCTGCAGGAGCT GGCTGTTAAAAACGGTGGCTGCATCGTGGAAAATCCCCTGCCCAATGATC CAAAGTGTTTTTGCATCGCAGGCGATGAGACGTTTTTAGTTAAGCGGCTC ATCCTTCAACAGCCACGCACCTGTGACATTGTGCGCATGGAGTGGCTACT TAGGGTCTGTCAGAAGCAGGAGCTTGAACTAAAGCCTAGAGATCTTATTG CGGCCACTGAACCACTGCAGCAGGATCTGGCTGAATGTTTTGATCGGCAC GGTGATAGCTACACCAAAGACATTGCCAACGTGGAGGAGCTGCAGGATCT GCTTCAAGGCATTGAGTTGACAGCTGATAATGTGGCTGGCATAACCGCAT CTAATCTCAATGCTCTGGAGGATCAGCTTCTGGATGGGAAAAAGAATCTG AACATGTTCCGCAACCTTAATGCGTTCTTCTACAGTCCGCATGGTGATGA AGTGGCTAAGCTTCTGTTTCTTCAAAACGGCGGCCGGATAGTCGACGATT CCGATCCGCAACTAAATCTGGGATTTATCTGTATGTCTTCTGACATCGAT AACGACCACTTCGAGCACTGGCTGCACAATCATTCCAAGTTGACCACTGA CAAGGTCTTAAACTCGGCGTGGATACATCAGTGCCATCGCGAAGGCATCC TACTTCCTATGCATTCTTTCGTCTAACTCAATGAGTTTTTCACGCTTTAT AGTTTTGTACAAAAATTACCTGTTATCCTTGTTATAAAATTGTTGTTTCA TTGACATTTTTCTTACCATAAAAAGCTTTAAACAGAAGTCATTCCGAATT TAATGTTATATCAAAAAGATTTTCATGGATAATTTGCTTCAATAAAGTGA AACATAGAATAACAATAGTAGAATGACAATAAGTACGCAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 13555313..13556892 | 3038..1459 | 7900 | 100 | Minus |
chrX | 22417052 | chrX | 13556955..13557867 | 1458..546 | 4565 | 100 | Minus |
chrX | 22417052 | chrX | 13558157..13558537 | 382..2 | 1905 | 100 | Minus |
chrX | 22417052 | chrX | 13557925..13558089 | 547..383 | 825 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 13664578..13666163 | 3044..1459 | 7930 | 100 | Minus |
X | 23542271 | X | 13666226..13667138 | 1458..546 | 4565 | 100 | Minus |
X | 23542271 | X | 13667428..13667808 | 382..2 | 1905 | 100 | Minus |
X | 23542271 | X | 13667196..13667360 | 547..383 | 825 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 13672676..13674261 | 3044..1459 | 7930 | 100 | Minus |
X | 23527363 | X | 13674324..13675236 | 1458..546 | 4565 | 100 | Minus |
X | 23527363 | X | 13675526..13675906 | 382..2 | 1905 | 100 | Minus |
X | 23527363 | X | 13675294..13675458 | 547..383 | 825 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 203..241 | 2909..2871 | 132 | 82.1 | Minus |
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 2983..3021 | 2909..2871 | 132 | 82.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 13555313..13556892 | 1459..3038 | 100 | <- | Minus |
chrX | 13556955..13557865 | 548..1458 | 100 | <- | Minus |
chrX | 13557925..13558089 | 383..547 | 100 | <- | Minus |
chrX | 13558157..13558537 | 1..382 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 1..2757 | 70..2826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 1..2757 | 70..2826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 1..2757 | 70..2826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 1..2757 | 70..2826 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 1..3037 | 2..3038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 1..3037 | 2..3038 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 3..3040 | 1..3038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Lig4-RA | 3..3040 | 1..3038 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13664584..13666163 | 1459..3038 | 100 | <- | Minus |
X | 13666226..13667136 | 548..1458 | 100 | <- | Minus |
X | 13667196..13667360 | 383..547 | 100 | <- | Minus |
X | 13667428..13667808 | 1..382 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13664584..13666163 | 1459..3038 | 100 | <- | Minus |
X | 13666226..13667136 | 548..1458 | 100 | <- | Minus |
X | 13667196..13667360 | 383..547 | 100 | <- | Minus |
X | 13667428..13667808 | 1..382 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13664584..13666163 | 1459..3038 | 100 | <- | Minus |
X | 13666226..13667136 | 548..1458 | 100 | <- | Minus |
X | 13667196..13667360 | 383..547 | 100 | <- | Minus |
X | 13667428..13667808 | 1..382 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 13561229..13561393 | 383..547 | 100 | <- | Minus |
arm_X | 13561461..13561841 | 1..382 | 99 | Minus | |
arm_X | 13558617..13560196 | 1459..3038 | 100 | <- | Minus |
arm_X | 13560259..13561169 | 548..1458 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 13672682..13674261 | 1459..3038 | 100 | <- | Minus |
X | 13674324..13675234 | 548..1458 | 100 | <- | Minus |
X | 13675294..13675458 | 383..547 | 100 | <- | Minus |
X | 13675526..13675906 | 1..382 | 99 | Minus |
Translation from 69 to 2825
> FI02888.pep MSVDIASTIKFRDICSLFEKIKATQKVANKEEVLKSYYESFCRHRESFRR QTGLNNDQPEDGASSFYSVLRLLLPGADTGRDTYGLQITALGRLYIRVLQ LPTDSSDAIRLQHRNGNMYRDYGDVVYSVLKPRCFNPPSNLRLKEIHQML DTIANEDTEVKQQQLIRFTEQASPEEQKWLIRLLLKSLGLGIGEQKIFGV LHPKAQDIYQRCSDLGHVCNLLADRTTDLDASSSKDSKAAVKFVNLNSVI RPFHQIRPMLCERFPGDIQELMQSDVLYLETKMDGERFQLHIDRGRFMYI SRNGVDYTRNFGHSYDHGTLTPKLRGLLPLGLESIILDGEMMVWDTNKLR FREKGENTDVKSLKPEGSWQPCFVVYDLLYFNGQSLLDHTYIQRAYKLQK LIVEQSGVLQLMRARKIGSVQEFNELFQQALDSHAEGIVLKKQGSRYQPG VRLGGGWYKDKADYIKGLITEFDVLIIGAFYNRKRTFVDSFLLGVLQPAP PGSSNRPEVFSIGVVANNTKQRGVLNHTLKPHWHDVVNEPPPLWFHYKPK ERSGCPDLWIEPQNSVILQVKAADLAPNGAFFTRKSLHFPRTEMKRDDKT WSECMTLKEFNDLCGGPLAIKKLNKRQLRLEDVTTKRKQMRMTPSERSRL GLAVYEKRYDASTSASTSKLFDGLSFCILSGSAGRHSKHQLQELAVKNGG CIVENPLPNDPKCFCIAGDETFLVKRLILQQPRTCDIVRMEWLLRVCQKQ ELELKPRDLIAATEPLQQDLAECFDRHGDSYTKDIANVEELQDLLQGIEL TADNVAGITASNLNALEDQLLDGKKNLNMFRNLNAFFYSPHGDEVAKLLF LQNGGRIVDDSDPQLNLGFICMSSDIDNDHFEHWLHNHSKLTTDKVLNSA WIHQCHREGILLPMHSFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21760-PA | 924 | GF21760-PA | 1..920 | 1..914 | 3879 | 77.2 | Plus |
Dana\GF17047-PA | 788 | GF17047-PA | 72..597 | 70..613 | 256 | 24.8 | Plus |
Dana\GF12871-PA | 749 | GF12871-PA | 226..711 | 128..599 | 247 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19495-PA | 927 | GG19495-PA | 1..918 | 1..918 | 4686 | 94 | Plus |
Dere\GG17130-PA | 805 | GG17130-PA | 77..602 | 70..613 | 264 | 24.5 | Plus |
Dere\GG22898-PA | 747 | GG22898-PA | 162..709 | 59..599 | 250 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11911-PA | 922 | GH11911-PA | 1..918 | 3..917 | 3118 | 62.6 | Plus |
Dgri\GH20153-PA | 799 | GH20153-PA | 57..587 | 70..613 | 286 | 24.5 | Plus |
Dgri\GH20192-PA | 674 | GH20192-PA | 160..637 | 138..600 | 235 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DNAlig4-PA | 918 | CG12176-PA | 1..918 | 1..918 | 4840 | 100 | Plus |
DNAlig1-PA | 747 | CG5602-PA | 224..709 | 128..599 | 256 | 23.4 | Plus |
DNAlig3-PA | 806 | CG17227-PA | 77..642 | 70..646 | 251 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15517-PA | 926 | GI15517-PA | 7..923 | 2..918 | 3100 | 61.7 | Plus |
Dmoj\GI20719-PA | 736 | GI20719-PA | 223..699 | 138..600 | 282 | 25.1 | Plus |
Dmoj\GI24375-PA | 793 | GI24375-PA | 57..579 | 70..614 | 274 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22420-PA | 916 | GL22420-PA | 1..913 | 3..917 | 3686 | 73.9 | Plus |
Dper\GL11174-PA | 744 | GL11174-PA | 221..707 | 128..600 | 264 | 24.3 | Plus |
Dper\GL27179-PA | 788 | GL27179-PA | 57..584 | 70..613 | 251 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11455-PA | 916 | GA11455-PA | 1..913 | 3..917 | 3683 | 73.9 | Plus |
Dpse\GA18999-PA | 744 | GA18999-PA | 221..707 | 128..600 | 261 | 24.3 | Plus |
Dpse\GA26759-PA | 788 | GA26759-PA | 57..584 | 70..613 | 243 | 24.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17599-PA | 671 | GM17599-PA | 1..669 | 118..786 | 3557 | 98.2 | Plus |
Dsec\GM17600-PA | 90 | GM17600-PA | 1..90 | 829..918 | 437 | 87.8 | Plus |
Dsec\GM26013-PA | 783 | GM26013-PA | 57..763 | 70..743 | 290 | 24.4 | Plus |
Dsec\GM16058-PA | 747 | GM16058-PA | 234..709 | 138..599 | 249 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11806-PA | 713 | GD11806-PA | 327..675 | 250..599 | 231 | 26.4 | Plus |
Dsim\GD20571-PA | 362 | GD20571-PA | 57..359 | 70..386 | 170 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19276-PA | 992 | GJ19276-PA | 1..887 | 3..888 | 3085 | 64.3 | Plus |
Dvir\GJ24382-PA | 818 | GJ24382-PA | 77..606 | 70..613 | 259 | 24 | Plus |
Dvir\GJ20456-PA | 667 | GJ20456-PA | 154..630 | 138..600 | 245 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10206-PA | 935 | GK10206-PA | 1..930 | 3..917 | 2946 | 61.6 | Plus |
Dwil\GK11194-PA | 796 | GK11194-PA | 56..574 | 70..613 | 298 | 25.5 | Plus |
Dwil\GK15713-PA | 744 | GK15713-PA | 159..707 | 59..600 | 240 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16147-PA | 918 | GE16147-PA | 1..918 | 1..918 | 4668 | 93.4 | Plus |
Dyak\GE24522-PA | 785 | GE24522-PA | 57..582 | 70..613 | 277 | 25.5 | Plus |
Dyak\GE14336-PA | 747 | GE14336-PA | 224..709 | 128..599 | 258 | 24.3 | Plus |
Translation from 69 to 2825
> FI02888.hyp MSVDIASTIKFRDICSLFEKIKATQKVANKEEVLKSYYESFCRHRESFRR QTGLNNDQPEDGASSFYSVLRLLLPGADTGRDTYGLQITALGRLYIRVLQ LPTDSSDAIRLQHRNGNMYRDYGDVVYSVLKPRCFNPPSNLRLKEIHQML DTIANEDTEVKQQQLIRFTEQASPEEQKWLIRLLLKSLGLGIGEQKIFGV LHPKAQDIYQRCSDLGHVCNLLADRTTDLDASSSKDSKAAVKFVNLNSVI RPFHQIRPMLCERFPGDIQELMQSDVLYLETKMDGERFQLHIDRGRFMYI SRNGVDYTRNFGHSYDHGTLTPKLRGLLPLGLESIILDGEMMVWDTNKLR FREKGENTDVKSLKPEGSWQPCFVVYDLLYFNGQSLLDHTYIQRAYKLQK LIVEQSGVLQLMRARKIGSVQEFNELFQQALDSHAEGIVLKKQGSRYQPG VRLGGGWYKDKADYIKGLITEFDVLIIGAFYNRKRTFVDSFLLGVLQPAP PGSSNRPEVFSIGVVANNTKQRGVLNHTLKPHWHDVVNEPPPLWFHYKPK ERSGCPDLWIEPQNSVILQVKAADLAPNGAFFTRKSLHFPRTEMKRDDKT WSECMTLKEFNDLCGGPLAIKKLNKRQLRLEDVTTKRKQMRMTPSERSRL GLAVYEKRYDASTSASTSKLFDGLSFCILSGSAGRHSKHQLQELAVKNGG CIVENPLPNDPKCFCIAGDETFLVKRLILQQPRTCDIVRMEWLLRVCQKQ ELELKPRDLIAATEPLQQDLAECFDRHGDSYTKDIANVEELQDLLQGIEL TADNVAGITASNLNALEDQLLDGKKNLNMFRNLNAFFYSPHGDEVAKLLF LQNGGRIVDDSDPQLNLGFICMSSDIDNDHFEHWLHNHSKLTTDKVLNSA WIHQCHREGILLPMHSFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Lig4-PA | 918 | CG12176-PA | 1..918 | 1..918 | 4840 | 100 | Plus |
DNA-ligI-PA | 747 | CG5602-PA | 224..709 | 128..599 | 256 | 23.4 | Plus |
lig3-PA | 806 | CG17227-PA | 77..642 | 70..646 | 251 | 23.8 | Plus |