Clone FI03215 Report

Search the DGRC for FI03215

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:32
Well:15
Vector:pFlc-1
Associated Gene/Transcriptcln3-RA
Protein status:FI03215.pep: gold
Sequenced Size:1558

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
cln3 2008-08-15 Release 5.9 accounting
cln3 2008-12-18 5.12 accounting

Clone Sequence Records

FI03215.complete Sequence

1558 bp assembled on 2008-08-11

GenBank Submission: BT044134.1

> FI03215.complete
AGATTTTCATTGCTCGAGCGGATTGAGTGGCAGCCGGAAATAATTCGAAA
GTCCGGCTCAATATGACGGCAACCAAGCAGCAAGAGGCTGAGGCCGAACA
TGATCCCCAAGTGGTGGTCACCCCTGGAGACGCCTCTCGCAGCTCTCGCC
AAGATCGGGGTCTATGGCGGGATCTTACTTCCTACTGGATCCTCGGTCTG
TGCAACAACTACGGATACGTGGTGATGCTGAGTGCTGCGCACGATATTAT
CAAGCAGTTTAATCCGAATGATGAATCGGAAGAAAGCTCGTCGGGAAGAA
ACTGTCACTTGGTTTCAACAGGTGCCATCTTGCTGGCAGACGTGCTGCCC
TCATTATTTGTCAAGATTCTAATGCCATTCTTTCCATTTTGGGTGAATTT
CCGTATAGCTCTTGCCGTGGCCTTTTCTGCAGCTGGTTTCCTCCTGGTTG
GATTCGCCAATGCCGAATGGATGGCTCTTTTGGGTGTCATCATCACTTCG
GCTAGCAGCGGAATAGGAGAAACCACTTTCTTGGCCTATTCTTCGCGATA
CAATAAGAATGTGATCTCCACTTGGTCGTCCGGAACTGGTGGCGCTGGAG
TTATCGGATCCTTGAGCTATGCTAGCTTGAGATCCTTAGACTTCAGTCCC
AGAGATACTATGCTGATTATGCTGATCTTCCCTGCGATCGAGGCCTTTGC
ATTCTGGTTGCTGCTTCGTCGTCCACAAGTTGATATATTGCCGGTTACCA
CGGTTGAGTCCACGGAAGTCCTGATCAGCGATGAGAAGCCATTAGTTGGG
TTCAAGGAAAAGCTCTTCTATATCAAGCACCTCTTCAAATATATGTTGCC
CCTTTGCCTGGTTTACTTCTTCGAATACTTCATCAATCAAGGATTGTTCG
AACTGGTTTACTTTGAAGATATATTCCTGGACAAGGACTCGCAGTACCGC
TGGCTAAATGTGGACTATCAGATCGGAGTCTTTATCTCGCGCTCCTCTGT
CAATCTCTTCCAGCTGGACAAGATCTGGCTGATGTCCATCTTCCAGTTCG
TCAACGTGGTATACTTCCTCACCGAGGTTATCTGGTGGTACACGCCTAGC
ATCTGGATCGTGTTCGCCATCGTCCTGTGGGAGGGACTTCTGGGCGGCGG
TGCTTACGTGAACACCTTCTATCGGATGTCCAAGGAGATTTCGCCGGAGC
GCCAGCAGTTCGCCATGGCCATGGTGGTACAGTCGGACTCCTATGGCATT
GCTCTGGCCGGATTTCTGGCCATTCCCGTGCACAACGCCATCTGTGGTCT
TCCGGCCGCGGCCAGAAGCCTTGTTTGGTGATACGGATCGAGGATCAGAA
TCAGGATCAGATTATGCCTTTACTGTGTGCGTTAGCCAAATAAGCGTGTG
TGTCTGTGCATGTCCCTATAGTATTAATCACTGGATCACTGGACATCCGG
TAACCAGATAGATCGTTGTATAGTTAGTATGCTGCTGTTAGACTACTCTA
TAAGTTTAGTTTAATAAAAAAAAAAAAATAAACACTACACTGTAAAAAAA
AAAAAAAA

FI03215.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
cln3-RA 1593 cln3-RA 48..1593 1..1544 7625 99.7 Plus
cln3.a 1608 cln3.a 114..1608 52..1544 7370 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17798818..17799467 1543..896 3110 99.2 Minus
chr3L 24539361 chr3L 17799523..17799862 896..557 1700 100 Minus
chr3L 24539361 chr3L 17800372..17800585 266..53 1070 100 Minus
chr3L 24539361 chr3L 17799921..17800080 557..398 800 100 Minus
chr3L 24539361 chr3L 17800169..17800300 397..266 660 100 Minus
chr3L 24539361 chr3L 17803657..17803708 52..1 260 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:09:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17809230..17809880 1544..896 3130 99.4 Minus
3L 28110227 3L 17809937..17810276 896..557 1700 100 Minus
3L 28110227 3L 17810786..17810999 266..53 1070 100 Minus
3L 28110227 3L 17810335..17810494 557..398 800 100 Minus
3L 28110227 3L 17810583..17810714 397..266 660 100 Minus
3L 28110227 3L 17814060..17814111 52..1 260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17802330..17802980 1544..896 3150 99.3 Minus
3L 28103327 3L 17803037..17803376 896..557 1700 100 Minus
3L 28103327 3L 17803886..17804099 266..53 1070 100 Minus
3L 28103327 3L 17803435..17803594 557..398 800 100 Minus
3L 28103327 3L 17803683..17803814 397..266 660 100 Minus
3L 28103327 3L 17807160..17807211 52..1 260 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:28:22 has no hits.

FI03215.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:29:23 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17798852..17799466 897..1508 99 <- Minus
chr3L 17799523..17799862 557..896 100 <- Minus
chr3L 17799922..17800080 398..556 100 <- Minus
chr3L 17800169..17800299 267..397 100 <- Minus
chr3L 17800372..17800585 53..266 100 <- Minus
chr3L 17803657..17803708 1..52 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:42:50 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1269 63..1331 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:09:23 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1269 63..1331 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:50:51 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1269 63..1331 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-09-08 12:19:07 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1269 63..1331 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:02:14 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1269 63..1331 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:48:34 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1545 1..1543 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:09:23 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1545 1..1543 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:50:51 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 9..1553 1..1543 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:29:10 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 1..1545 1..1543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:02:14 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
cln3-RA 9..1553 1..1543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:23 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17809231..17809879 897..1543 99 <- Minus
3L 17809937..17810276 557..896 100 <- Minus
3L 17810336..17810494 398..556 100 <- Minus
3L 17810583..17810713 267..397 100 <- Minus
3L 17810786..17810999 53..266 100 <- Minus
3L 17814060..17814111 1..52 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:23 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17809231..17809879 897..1543 99 <- Minus
3L 17809937..17810276 557..896 100 <- Minus
3L 17810336..17810494 398..556 100 <- Minus
3L 17810583..17810713 267..397 100 <- Minus
3L 17810786..17810999 53..266 100 <- Minus
3L 17814060..17814111 1..52 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:29:23 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17809231..17809879 897..1543 99 <- Minus
3L 17809937..17810276 557..896 100 <- Minus
3L 17810336..17810494 398..556 100 <- Minus
3L 17810583..17810713 267..397 100 <- Minus
3L 17810786..17810999 53..266 100 <- Minus
3L 17814060..17814111 1..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:50:51 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17802331..17802979 897..1543 99 <- Minus
arm_3L 17803037..17803376 557..896 100 <- Minus
arm_3L 17803436..17803594 398..556 100 <- Minus
arm_3L 17803683..17803813 267..397 100 <- Minus
arm_3L 17803886..17804099 53..266 100 <- Minus
arm_3L 17807160..17807211 1..52 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:39:13 Download gff for FI03215.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17807160..17807211 1..52 100   Minus
3L 17803886..17804099 53..266 100 <- Minus
3L 17802331..17802979 897..1543 99 <- Minus
3L 17803037..17803376 557..896 100 <- Minus
3L 17803436..17803594 398..556 100 <- Minus
3L 17803683..17803813 267..397 100 <- Minus

FI03215.pep Sequence

Translation from 62 to 1330

> FI03215.pep
MTATKQQEAEAEHDPQVVVTPGDASRSSRQDRGLWRDLTSYWILGLCNNY
GYVVMLSAAHDIIKQFNPNDESEESSSGRNCHLVSTGAILLADVLPSLFV
KILMPFFPFWVNFRIALAVAFSAAGFLLVGFANAEWMALLGVIITSASSG
IGETTFLAYSSRYNKNVISTWSSGTGGAGVIGSLSYASLRSLDFSPRDTM
LIMLIFPAIEAFAFWLLLRRPQVDILPVTTVESTEVLISDEKPLVGFKEK
LFYIKHLFKYMLPLCLVYFFEYFINQGLFELVYFEDIFLDKDSQYRWLNV
DYQIGVFISRSSVNLFQLDKIWLMSIFQFVNVVYFLTEVIWWYTPSIWIV
FAIVLWEGLLGGGAYVNTFYRMSKEISPERQQFAMAMVVQSDSYGIALAG
FLAIPVHNAICGLPAAARSLVW*

FI03215.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25236-PA 422 GF25236-PA 1..422 1..422 2124 94.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15779-PA 412 GG15779-PA 1..412 1..422 2112 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14467-PA 422 GH14467-PA 1..422 1..422 1900 85.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cln3-PB 422 CG5582-PB 1..422 1..422 2191 100 Plus
Cln3-PA 422 CG5582-PA 1..422 1..422 2191 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13613-PA 425 GI13613-PA 4..425 3..422 1924 87 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22749-PA 422 GL22749-PA 1..422 1..422 2069 91.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18985-PA 422 GA18985-PA 1..422 1..422 2069 91.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24305-PA 368 GM24305-PA 1..368 55..422 1906 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13948-PA 425 GJ13948-PA 4..425 3..422 1928 87 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10451-PA 423 GK10451-PA 1..423 1..422 2049 90.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22116-PA 422 GE22116-PA 1..422 1..422 2197 98.6 Plus

FI03215.hyp Sequence

Translation from 62 to 1330

> FI03215.hyp
MTATKQQEAEAEHDPQVVVTPGDASRSSRQDRGLWRDLTSYWILGLCNNY
GYVVMLSAAHDIIKQFNPNDESEESSSGRNCHLVSTGAILLADVLPSLFV
KILMPFFPFWVNFRIALAVAFSAAGFLLVGFANAEWMALLGVIITSASSG
IGETTFLAYSSRYNKNVISTWSSGTGGAGVIGSLSYASLRSLDFSPRDTM
LIMLIFPAIEAFAFWLLLRRPQVDILPVTTVESTEVLISDEKPLVGFKEK
LFYIKHLFKYMLPLCLVYFFEYFINQGLFELVYFEDIFLDKDSQYRWLNV
DYQIGVFISRSSVNLFQLDKIWLMSIFQFVNVVYFLTEVIWWYTPSIWIV
FAIVLWEGLLGGGAYVNTFYRMSKEISPERQQFAMAMVVQSDSYGIALAG
FLAIPVHNAICGLPAAARSLVW*

FI03215.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
cln3-PB 422 CG5582-PB 1..422 1..422 2191 100 Plus
cln3-PA 422 CG5582-PA 1..422 1..422 2191 100 Plus