Clone FI03249 Report

Search the DGRC for FI03249

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:32
Well:49
Vector:pFlc-1
Associated Gene/Transcriptnclb-RA
Protein status:FI03249.pep: gold
Sequenced Size:1559

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6751 2008-12-18 5.12 accounting

Clone Sequence Records

FI03249.complete Sequence

1559 bp assembled on 2008-09-24

GenBank Submission: BT044570.1

> FI03249.complete
GGTCACACAACCTGCCTTGTTTGAACTGCACGTGTTTATCAATTCGTTTG
GTGTATCAAACTAAGTTGAAAAATATAATCATAATGGCTGAGGAAGGACC
ACCGGAGCCGAGCATTGATTTTGTCCCAGCTCTTTGCTTTGTACCACGCG
GCGTGGCTAAGGATCGTCCCGACAAGATCGTGCTGACGCAGGCGGAGCTG
GCCAGGATTATCGGTGATACGCAACAGGAATTGGACGAGGAGAGCGACGA
CGATGCAGAGGAGGGCGAAAATGCCGAGGAAGACCAAAACGACATGGATG
TGGACGACCACGCGGATGCCAATAGTGAGAACCGCGATCCGCAGGACGAG
TTCCAATTCCAGGAGTATGACAACGAGGCGAATGCTAATGTCACCAGTCT
GGCCAACATCGTGGACGCTGGCGAGCAAATCCCCGATGAGGACGAAGACT
CCGAGGCCGAGGACGAGGTGATCAAGCCCAGCGACAACCTCATTCTAGTG
GGTCACGTTCAAGACGACGCCGCCTCCATGGAGGTGTGGGTTTTCAACCA
GGAGGAGGAGGCTCTCTACACCCACCACGACTTTCTGCTGCCAAGCTTTC
CTCTGTGCATCGAGTGGATGAATCACGACGCGGGCAGCGAAAAGGCGGGC
AACATGTGCGCCATCGGCTGCATGGATCCGATAATCACAGTCTGGGATCT
AGACATACAGGACGCTATCGAGCCCACATTTAAGCTGGGTTCCAAAGGCA
GCCGGAAGCAGAACAAAGAGCAGTATGGACACAAGGACGCCGTGCTGGAT
CTCTCTTGGAACACCAACTTTGAGCACATTCTGGCCAGCGGGTCCGTGGA
CCAAACTGTGATTCTGTGGGACATGGACGAGGGCCAGCCTCATACAACCA
TTACCGCTTTTGGCAAACAGATTCAGTCGCTGGAATTCCATCCGCAAGAG
GCTCAAAGCATTCTTACCGGCTGTGCCGATGGATACGTGCGACTCTTCGA
TTGCCGCGACGCTGAGGGCGTCAACTCGTCCAGCATTGAGTGGAAAGTTG
ACGGTGAAGTGGAGAAGGTCCTGTGGCATCCCACACAGACCGACTACTTC
ATCGTGGGCACCAACGATGGCACCTTGCATTACGCCGACAAACGTTCTCC
TGGACAACTGCTGTGGTCCGTAAAGGCCCACAACGAGGAAATCTCCGGTG
TGTGCTTCAACAACCAGAAGCCTAATCTGCTGACCTCCACCTCCACGGAG
GGCACCCTAAAGGTGTGGAACTTTGATGGCACAGAGGCAAAGCACGTCTA
CGAGCACGAGTTCAACATGGGTCGCTTGCAGTGCATGCGCCAGTGCCCCG
AGGATCCCTACACCCTGGCCTTCGGCGGAGAGAAGCCTCCGCGCTGTGCG
ATCTTTAACATCAAGAACTCGATAGCCGTGCGCCGAACGTTTGGAATCCC
TGATGCAGAGTAGGCAAATCGTACAGCTACGTATTTATCTGTGTATATGC
TTTATATGACTTTTAAATAAATATGAATTATATATAAGAACCTGAAAAAA
AAAAAAAAA

FI03249.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6751-RA 1543 CG6751-RA 1..1543 1..1543 7715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6763345..6764887 1..1543 7715 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:09:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10875754..10877296 1..1543 7715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10876953..10878495 1..1543 7715 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:17:49 has no hits.

FI03249.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:18:35 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6763345..6764887 1..1544 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:43:11 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
CG6751-RA 1..1380 84..1463 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:13:39 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
CG6751-RA 1..1380 84..1463 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:34:21 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
nclb-RA 1..1380 84..1463 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:30:07 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
nclb-RA 1..1380 84..1463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:51:44 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
CG6751-RA 1..1543 1..1544 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:13:39 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
CG6751-RA 1..1543 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:34:21 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
nclb-RA 7..1549 1..1543 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 18:42:16 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
CG6751-RA 1..1543 1..1544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:07 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
nclb-RA 7..1549 1..1543 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:35 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10875754..10877296 1..1544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:35 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10875754..10877296 1..1544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:18:35 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10875754..10877296 1..1544 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:34:21 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6763259..6764801 1..1544 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:44:15 Download gff for FI03249.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10876953..10878495 1..1544 99   Plus

FI03249.hyp Sequence

Translation from 2 to 1462

> FI03249.hyp
SHNLPCLNCTCLSIRLVYQTKLKNIIIMAEEGPPEPSIDFVPALCFVPRG
VAKDRPDKIVLTQAELARIIGDTQQELDEESDDDAEEGENAEEDQNDMDV
DDHADANSENRDPQDEFQFQEYDNEANANVTSLANIVDAGEQIPDEDEDS
EAEDEVIKPSDNLILVGHVQDDAASMEVWVFNQEEEALYTHHDFLLPSFP
LCIEWMNHDAGSEKAGNMCAIGCMDPIITVWDLDIQDAIEPTFKLGSKGS
RKQNKEQYGHKDAVLDLSWNTNFEHILASGSVDQTVILWDMDEGQPHTTI
TAFGKQIQSLEFHPQEAQSILTGCADGYVRLFDCRDAEGVNSSSIEWKVD
GEVEKVLWHPTQTDYFIVGTNDGTLHYADKRSPGQLLWSVKAHNEEISGV
CFNNQKPNLLTSTSTEGTLKVWNFDGTEAKHVYEHEFNMGRLQCMRQCPE
DPYTLAFGGEKPPRCAIFNIKNSIAVRRTFGIPDAE*

FI03249.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
nclb-PA 459 CG6751-PA 1..459 28..486 2471 100 Plus
Caf1-PB 429 CG4236-PB 228..415 259..436 167 26.8 Plus
Caf1-PA 430 CG4236-PA 229..416 259..436 167 26.8 Plus

FI03249.pep Sequence

Translation from 2 to 1462

> FI03249.pep
SHNLPCLNCTCLSIRLVYQTKLKNIIIMAEEGPPEPSIDFVPALCFVPRG
VAKDRPDKIVLTQAELARIIGDTQQELDEESDDDAEEGENAEEDQNDMDV
DDHADANSENRDPQDEFQFQEYDNEANANVTSLANIVDAGEQIPDEDEDS
EAEDEVIKPSDNLILVGHVQDDAASMEVWVFNQEEEALYTHHDFLLPSFP
LCIEWMNHDAGSEKAGNMCAIGCMDPIITVWDLDIQDAIEPTFKLGSKGS
RKQNKEQYGHKDAVLDLSWNTNFEHILASGSVDQTVILWDMDEGQPHTTI
TAFGKQIQSLEFHPQEAQSILTGCADGYVRLFDCRDAEGVNSSSIEWKVD
GEVEKVLWHPTQTDYFIVGTNDGTLHYADKRSPGQLLWSVKAHNEEISGV
CFNNQKPNLLTSTSTEGTLKVWNFDGTEAKHVYEHEFNMGRLQCMRQCPE
DPYTLAFGGEKPPRCAIFNIKNSIAVRRTFGIPDAE*

FI03249.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13780-PA 460 GF13780-PA 1..460 28..486 2027 87.4 Plus
Dana\GF14067-PA 419 GF14067-PA 205..405 216..421 165 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20153-PA 459 GG20153-PA 1..459 28..486 2398 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21179-PA 467 GH21179-PA 6..467 31..486 1878 78.6 Plus
Dgri\GH13339-PA 419 GH13339-PA 209..416 220..432 172 25.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
nclb-PA 459 CG6751-PA 1..459 28..486 2471 100 Plus
Caf1-55-PB 429 CG4236-PB 228..415 259..436 167 26.8 Plus
Caf1-55-PA 430 CG4236-PA 229..416 259..436 167 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18773-PA 457 GI18773-PA 6..457 31..486 1856 77.4 Plus
Dmoj\GI17814-PA 419 GI17814-PA 209..405 220..421 183 27.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20089-PA 458 GL20089-PA 1..457 28..486 2054 86.9 Plus
Dper\GL21279-PA 422 GL21279-PA 221..408 259..436 163 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19833-PA 458 GA19833-PA 1..457 28..486 2054 87.1 Plus
Dpse\GA18051-PA 430 GA18051-PA 229..416 259..436 157 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21242-PA 459 GM21242-PA 1..459 28..486 2443 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10760-PA 359 GD10760-PA 5..359 132..486 1908 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21798-PA 456 GJ21798-PA 4..456 29..486 1911 79.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20635-PA 464 GK20635-PA 5..461 30..485 1918 81.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12843-PA 459 GE12843-PA 1..459 28..486 2236 95.9 Plus
Dyak\GE13328-PA 420 GE13328-PA 206..406 216..421 175 27.1 Plus