Clone FI03453 Report

Search the DGRC for FI03453

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:34
Well:53
Vector:pFlc-1
Associated Gene/TranscriptTk-RA
Protein status:FI03453.pep: gold
Sequenced Size:1641

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Tk 2008-12-18 5.12 accounting

Clone Sequence Records

FI03453.complete Sequence

1641 bp assembled on 2008-09-15

GenBank Submission: BT044493.1

> FI03453.complete
TCATCGCTGTCTGGAACAGCGATGACTCGAGAGCGGGGCTCAGTTGTTGC
ATACTTCTCGGCGCGTTCGGTACGCGAGCATTTGGACAAACAGTTAGATA
GAACTGAAAGTGAAAGATATTTCCCAAGCGAATTGGCTTTACTTCAGCGC
ATCGATTTCCACGCCCGCCTAAAAGCTCGCCACATCCAATGCGCCCTCTG
AGCGGTTTGATAGCGCTGGCGCTGCTGCTGCTGCTCCTGCTGACGGCACC
ATCGAGTGCGGCGGACACGGAGACGGAGTCCTCCGGCAGCCCGCTGACGC
CCGGCGCCGAAGAGCCGCGTCGGGTGGTAAAGCGGGCGCCCACGTCCAGC
TTCATTGGGATGCGCGGCAAGAAGGACGAGGAGCACGACACCTCGGAGGG
TAACTGGCTGGGATCGGGACCCGATCCGCTGGATTACGCCGACGAGGAGG
CGGACAGCAGCTACGCGGAGAACGGGCGGCGACTGAAGAAGGCACCGCTG
GCCTTTGTTGGCCTGCGTGGCAAGAAATTCATCCCAATCAACAACCGCCT
GTCCGATGTCCTGCAGAGCCTGGAGGAGGAGCGCCTGCGGGATAGCCTGC
TGCAGGACTTCTTCGATCGCGTGGCTGGGCGTGATGGCTCCGCGGTGGGC
AAGAGAGCGCCCACCGGGTTCACGGGCATGCGAGGTAAGCGACCCGCCCT
GCTGGCCGGGGACGATGACGCGGAGGCGGACGAGGCCACGGAGCTGCAAC
AAAAGCGGGCGCCGGTCAATTCCTTTGTGGGGATGCGCGGCAAGAAGGAC
GTCTCCCACCAGCACTACAAGCGTGCAGCTCTCTCCGATTCCTATGACTT
GAGAGGAAAACAGCAGCGCTTCGCCGACTTCAACAGCAAATTTGTGGCGG
TGCGTGGCAAGAAGAGCGATCTGGAGGGCAACGGAGTCGGGATTGGTGAC
GATCATGAGCAAGCTCTGGTGCATCCATGGCTCTACCTGTGGGGAGAAAA
GCGAGCGCCCAACGGATTCCTGGGAATGCGAGGCAAACGGCCAGCACTTT
TCGAGTAGGCGATGTTGAGCGATTTGATAGATCTTGATGGAAGTTCCTCT
TAGAGCTACAAAACTAGGAAATGCGAAAGTAGATGGACACAGGGGACCGG
GAGAGCAGATTTGGAAACAGAAAATGGATCACATGAGTGTTTTAAATAAT
CACTGGGCTGGAGATTATTTCAAACACGGACACACAAAAAACACACGGCT
AAGAATTTGCTCTGTTTGTCGACACAAAATTTCAGCTTAATGTATAACGA
GACTTGCGAATAATTTATTGGGAATTTATTTGAAATTGAATGAGATGCTT
CGATGAGTGTGTGGATTCAATTGTACTATTTGCATATCTAAGTGTAAACT
TTTAATCAAAATTATGATGAAAATTAAACTAGAAGAAGTTCAAATGCACA
AGATAAACAGAAAAGTGGGAAAGTAATTATTTATTTAAAACAAATATATT
TAAAACGAATATACTTAAAGATACATTTCAGTTGTGGTACATCTACGTAT
ACAAAATATATATACACCTACATTAATAGCACAAATAAATATTGTAAATA
ATGAATAAATATTTATTTCAGAAACAAAAAAAAAAAAAAAA

FI03453.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tk-RA 1652 Tk-RA 65..1652 38..1625 7940 100 Plus
Tk.a 1593 Tk.a 9..1593 38..1625 7870 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7820788..7821482 839..145 3415 99.4 Minus
chr3R 27901430 chr3R 7819595..7820178 1625..1042 2890 99.7 Minus
chr3R 27901430 chr3R 7820384..7820588 1044..840 995 99 Minus
chr3R 27901430 chr3R 7830796..7830902 144..38 535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:10:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11995372..11996066 839..145 3475 100 Minus
3R 32079331 3R 11994175..11994758 1625..1042 2920 100 Minus
3R 32079331 3R 11994964..11995168 1044..840 1025 100 Minus
3R 32079331 3R 12005358..12005464 144..38 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11736203..11736897 839..145 3475 100 Minus
3R 31820162 3R 11735006..11735589 1625..1042 2920 100 Minus
3R 31820162 3R 11735795..11735999 1044..840 1025 100 Minus
3R 31820162 3R 11746189..11746295 144..38 535 100 Minus
Blast to na_te.dros performed 2019-03-15 23:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 471..625 1538..1386 139 59.7 Minus

FI03453.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:57:08 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7819638..7820175 1045..1582 93 <- Minus
chr3R 7820384..7820588 840..1044 99 <- Minus
chr3R 7820788..7821482 145..839 99 <- Minus
chr3R 7830796..7830910 31..144 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:42:44 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..870 189..1058 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:02:01 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..870 189..1058 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:32:04 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..870 189..1058 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:40 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..870 189..1058 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:44 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..1596 31..1625 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:02:01 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..1596 31..1625 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:32:04 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..1557 69..1625 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 12:12:59 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..1596 31..1625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:40 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
Tk-RA 1..1557 69..1625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:08 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11994175..11994755 1045..1625 100 <- Minus
3R 11994964..11995168 840..1044 100 <- Minus
3R 11995372..11996066 145..839 100 <- Minus
3R 12005358..12005472 31..144 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:08 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11994175..11994755 1045..1625 100 <- Minus
3R 11994964..11995168 840..1044 100 <- Minus
3R 11995372..11996066 145..839 100 <- Minus
3R 12005358..12005472 31..144 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:08 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11994175..11994755 1045..1625 100 <- Minus
3R 11994964..11995168 840..1044 100 <- Minus
3R 11995372..11996066 145..839 100 <- Minus
3R 12005358..12005472 31..144 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:32:04 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7819897..7820477 1045..1625 100 <- Minus
arm_3R 7820686..7820890 840..1044 100 <- Minus
arm_3R 7821094..7821788 145..839 100 <- Minus
arm_3R 7831080..7831194 31..144 96   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:29:38 Download gff for FI03453.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11735006..11735586 1045..1625 100 <- Minus
3R 11735795..11735999 840..1044 100 <- Minus
3R 11736203..11736897 145..839 100 <- Minus
3R 11746189..11746303 31..144 96   Minus

FI03453.pep Sequence

Translation from 188 to 1057

> FI03453.pep
MRPLSGLIALALLLLLLLTAPSSAADTETESSGSPLTPGAEEPRRVVKRA
PTSSFIGMRGKKDEEHDTSEGNWLGSGPDPLDYADEEADSSYAENGRRLK
KAPLAFVGLRGKKFIPINNRLSDVLQSLEEERLRDSLLQDFFDRVAGRDG
SAVGKRAPTGFTGMRGKRPALLAGDDDAEADEATELQQKRAPVNSFVGMR
GKKDVSHQHYKRAALSDSYDLRGKQQRFADFNSKFVAVRGKKSDLEGNGV
GIGDDHEQALVHPWLYLWGEKRAPNGFLGMRGKRPALFE*

FI03453.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17753-PA 297 GF17753-PA 27..297 25..289 936 72.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17170-PA 293 GG17170-PA 1..293 1..289 1197 88.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12475-PA 286 GH12475-PA 33..286 34..289 739 63.1 Plus
Dgri\GH11914-PA 190 GH11914-PA 1..160 124..285 509 64.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tk-PA 289 CG14734-PA 1..289 1..289 1492 100 Plus
Tk-PB 297 CG14734-PB 1..297 1..289 1473 97.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24061-PA 281 GI24061-PA 15..281 18..289 872 64.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21585-PA 293 GL21585-PA 27..287 25..285 874 67 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13208-PA 297 GA13208-PA 27..297 25..289 869 65.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26049-PA 289 GM26049-PA 1..289 1..289 1473 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20612-PA 289 GD20612-PA 1..289 1..289 1475 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23687-PA 282 GJ23687-PA 19..282 22..289 825 63.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11666-PA 269 GK11666-PA 2..266 20..287 766 57.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24560-PA 288 GE24560-PA 1..288 1..289 1219 90.8 Plus

FI03453.hyp Sequence

Translation from 188 to 1057

> FI03453.hyp
MRPLSGLIALALLLLLLLTAPSSAADTETESSGSPLTPGAEEPRRVVKRA
PTSSFIGMRGKKDEEHDTSEGNWLGSGPDPLDYADEEADSSYAENGRRLK
KAPLAFVGLRGKKFIPINNRLSDVLQSLEEERLRDSLLQDFFDRVAGRDG
SAVGKRAPTGFTGMRGKRPALLAGDDDAEADEATELQQKRAPVNSFVGMR
GKKDVSHQHYKRAALSDSYDLRGKQQRFADFNSKFVAVRGKKSDLEGNGV
GIGDDHEQALVHPWLYLWGEKRAPNGFLGMRGKRPALFE*

FI03453.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tk-PA 289 CG14734-PA 1..289 1..289 1492 100 Plus
Tk-PB 297 CG14734-PB 1..297 1..289 1473 97.3 Plus