BDGP Sequence Production Resources |
Search the DGRC for FI03669
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 36 |
Well: | 69 |
Vector: | pOT2 |
Associated Gene/Transcript | retm-RA |
Protein status: | FI03669.pep: gold |
Sequenced Size: | 3332 |
Gene | Date | Evidence |
---|---|---|
retm | 2008-12-18 | 5.12 accounting |
3332 bp assembled on 2008-09-12
GenBank Submission: BT044154.1
> FI03669.complete AGAACTCCTACGCTAGGAGCCAACGGATACCAGACACAACTCAGTGAAAT AAATAGCAGTGGCGTGAACTGTCACGAGCAAAAAAACAAACCCAGCTCGG TATTCCAGTGCCCAAGTTTGGTCACCTTCCCCGCCCCCGCGCGCTCATTA TACTGCAACGGAAAAGCGCAGAGTGAAAATTGATTTTTTAAACAGTGCGA ACTCCACAATCAGTGCAACGAAAATTTGAAATAAAAAACACGGAACGGAC GATTGAAAGGCAGCAAGATGGTGCAAAAATTCCAGTCACCCGTTCGCGTC TACAAATATCCTTTTGAGCTGGTGATGAAGGCCTATGAGCGGCGGTTTCC CACATGCCCGCAGATGCCCATCGTCCTGGACTGTGAGGTCATTAAGGACG AGTCCCTGGAGGACGGGGCCAAGCGAAACACGAGCCGACGCTGCAAGCTG GCGGTCGACGCGCCGTACATCTTCAAAAAGCTTATTGGCGTGGACCATGT GTACTTCCTGCAGCACAACTTCCTGGACCTGGCCAACCGCACGCTGAGCA TCGAGGCGGTCAACGAGAGCTTCTCGTCGCGCATCGAAATCTTCGAGCGG TGTCGCTACTACGCCCATCCGGACAACTCCGAATGGACGTGCTTTGACCA GTCGGCCACGCTGGACATTAAGAACTTCTTCGGCTTCGAGCACTCGATGG AAAAGATGGGCATGAAGCAGTACACCCAGACGACGCTGAAGGGCAAAGAA ATCATTGAGTTCTTTATCGGGCAGCTGCGCGAGGAAGGCATCACGCATGT GGAGCGTTGGACATCGCCCAGTGATGCAACCAAATCGCCAACCCTCGATC AGGCTTCGGATCAGCAGCATAGCATCTTGCTGGACGGCGACTTTATCGCA CGCAGCCTGGGCCAGCTGTCGCCCATGCAGGAGTCCAAGCTGCTGGAGCT GCGAAAAATGCTGGATGGTGTCGATGACTTGGAGCGTGTGCCCAGTTATC AGACCATCCTGCGTTTCTTAGCAGCCAGGGACTGGCACGTTAGCCAGGCC TACGCCATGCTCTGCGACTCGCTTCGCTGGCGTCGGGAACATCGCATCGA CGCACTGTTGGCGGAGTACTCCAAGCCAGCCGTGGTAGTGGAACACTTTC CGGGCGGCTGGCATCATTTGGACAAGGACGGTCGACCCGTTTACATTCTG CGCCTGGGACACATGGACGTCAAGGGCCTGCTAAAGTCACTGGGAATGGA TGGACTACTGCGATTGGCTTTGCACATCTGCGAGGAAGGCATTCAGAAGA TCAATGAATCCGCCGAACGCCTGGAGAAGCCAGTTCTCAACTGGTCACTG CTTGTCGATCTGGAGGGTCTTTCTATGCGCCACCTCTGGCGTCCCGGCAT CAAAGCCCTGCTCAACATCATCGAGACTGTGGAGCGCAATTACCCAGAGA CCATGGGCCGTGTCCTAGTGGTGCGAGCGCCCAGAGTGTTTCCCATTGCA TGGACAATCGTTAGTGCTTTTATTGATGAGCACACCCGATCCAAGTTCCT GTTCTACGGCCCCGACTGTGCGCACATGAAGGATGGCCTGGCCCAGTATC TCGACGAGGAGATTGTGCCTGACTTCCTGGGCGGACCGTGCAAGACCATG ATTCACGAGGGCGGACTGGTGCCTAAGACGTTGTACAAGATGAATTCGCT GGAGGATCACGACGACGAAGTGACCGCCGAGCTGCCCACCACTGCCGCGG CACAGGCTTTGGTTCCAGGCAAGCGCCTGTCTGCCAACCAGCAACACGAT CATCGCAATCTGTACAAGAGTGTGGATCTCAAGGCCGGATTCGCGCACGA GCTGCTCATCCGGAACGAGGATCCCAAGAGTGTGCTCACCTGGGACTTCG ATGTGATGCGCAACGATCTGCACTTTACGCTCTACCGGGTCACCCAGGAG CTTCCGGAAAAGAATGATTCCGCCGTCTCGTACTTTGATCTGCAGGACTT CGTCGAGGGCGTCAATTATTTCCGTGAGGAGCCAACGCTGATTTGCCGGC ACAAGGAGAGCGTCCAGGGGTCGCACGTGATGCATCACAACGACAGCTAT CTTATGCACTGGTTTAGTCCATCGGGTGCCCAGTTAAACGTCTTCTACGA GGTGCTCAGCTCGGCCAACTACAAGGGTTCGATGACCAGCCTGCAGTCGG CATTCTCATCGAACTCGTCGGCGGCCAGCTCGGTGCAGAGTCGATGATAT GAGAAAGCCGGGGATGGCGGAACGAACGGCGCCGAATGGAGATCCCCGGC ATTGGAGGAGCCCATAGCGGCGGACATTCTCACGGGCACCCTGATGGAGA AGAGCCTGAATCTATTTGAAACGCCGGACGTATTCTTTTAAGACCGAAAG TGGTAATATCTTGTGTTTTAGTTGTCTTTAGTTGTTTAGCAGAATGTTAG TTTGATTTTAAATTGTATTTAGCTCAAATAGGCCATTTATTTCCTTTTAA ATTTATTATATTCATTCAATATATACAAGCATTCATATTATTGATAATCT TAAGAAAATTAGAAATATCAGCGGTTTAAATGAGCAACACCAAAATATCA CGCAACGTTTTATTTGAATCGTCAATTTGAATTTTTCGTAAGCAGCTCTA TAAATGAAGTTTTAATGCGTACATATATATGTAAAAGCGACGTAATTTTT ATAGCTTTTTCTAATGGAACATTTTTTAGCAACAATTAAGGAACTTATTG CGATTGCGCAGCCACTGAAACGAAAATAGAAAAAATTGAAATTGTAATCA ATAACTACGTGTTACCTAATTAGTTTAATAAACAAATTGCCGAAATGGCT TATTGCAAGGATTTTAGCCAGAACTTATACAAAAGAGTGAAATGTAAGAT TTGAACTCGAAATACACACGTAGGTTATAGCTAGACGTCAGATTATAATT ATAAATGTAAAATTGTATTTTAAACATTCGAATGCAGAACGTTTTTGATT GCACACTAATTACCCCGTCATTTGTACGCCCTTAATTGCTAATATCAATC AATCTCCAAAGTGTTTTTAAAATCAAAAAAGGCAACTTCAGTGTGTTTTT TTGGTTATTATTTATTGTATTAAAAACGAATTACTATGCGGATGTTTACA ATTTAGTTTTATAAATAATCTGACGTGTATTGTAAGAATAAACTGACAAG CCAATAACGAAGGAAAAATGAGTGCATGTTAACTAAGTGTGTAAGTTGTA TTAAGAACGTAATCAAATAAATGCTATTAGATCAATTACATGTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
retm-RA | 3461 | retm-RA | 138..3431 | 1..3294 | 16470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6447779..6449106 | 3293..1966 | 6625 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 6451094..6452032 | 1267..329 | 4680 | 99.9 | Minus |
chr2L | 23010047 | chr2L | 6449666..6449990 | 1966..1642 | 1625 | 100 | Minus |
chr2L | 23010047 | chr2L | 6454507..6454836 | 331..1 | 1575 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 6450765..6451029 | 1530..1266 | 1310 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 6450591..6450710 | 1644..1525 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6448805..6450133 | 3294..1966 | 6645 | 100 | Minus |
2L | 23513712 | 2L | 6452121..6453059 | 1267..329 | 4695 | 100 | Minus |
2L | 23513712 | 2L | 6455534..6455864 | 331..1 | 1655 | 100 | Minus |
2L | 23513712 | 2L | 6450693..6451017 | 1966..1642 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 6451792..6452056 | 1530..1266 | 1310 | 99.6 | Minus |
2L | 23513712 | 2L | 6451618..6451737 | 1644..1525 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6448805..6450133 | 3294..1966 | 6645 | 100 | Minus |
2L | 23513712 | 2L | 6452121..6453059 | 1267..329 | 4695 | 100 | Minus |
2L | 23513712 | 2L | 6455534..6455864 | 331..1 | 1655 | 100 | Minus |
2L | 23513712 | 2L | 6450693..6451017 | 1966..1642 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 6451792..6452056 | 1530..1266 | 1310 | 99.6 | Minus |
2L | 23513712 | 2L | 6451618..6451737 | 1644..1525 | 600 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
transib3 | 2883 | transib3 TRANSIB3 2883bp | 2578..2755 | 2416..2585 | 157 | 59.8 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1274..1343 | 3012..2942 | 136 | 67.6 | Minus |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 494..580 | 3032..3118 | 120 | 59.8 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1104..1222 | 2685..2566 | 120 | 57.9 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 38..107 | 2568..2498 | 118 | 64.8 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7076..7145 | 2568..2498 | 118 | 64.8 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6447779..6449105 | 1967..3293 | 99 | <- | Minus |
chr2L | 6449666..6449987 | 1645..1966 | 100 | <- | Minus |
chr2L | 6450591..6450709 | 1526..1644 | 100 | <- | Minus |
chr2L | 6450770..6451028 | 1267..1525 | 100 | <- | Minus |
chr2L | 6451095..6452030 | 331..1266 | 99 | <- | Minus |
chr2L | 6454508..6454836 | 1..330 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RA | 1..1980 | 268..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RA | 1..1980 | 268..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RB | 1..2124 | 268..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RB | 1..2124 | 268..2391 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RA | 71..3363 | 1..3293 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RA | 71..3363 | 1..3293 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RA | 66..3358 | 1..3293 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RA | 71..3363 | 1..3293 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
retm-RA | 66..3358 | 1..3293 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6451618..6451736 | 1526..1644 | 100 | <- | Minus |
2L | 6448806..6450132 | 1967..3293 | 100 | <- | Minus |
2L | 6450693..6451014 | 1645..1966 | 100 | <- | Minus |
2L | 6451797..6452055 | 1267..1525 | 100 | <- | Minus |
2L | 6452122..6453057 | 331..1266 | 100 | <- | Minus |
2L | 6455535..6455864 | 1..330 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6451618..6451736 | 1526..1644 | 100 | <- | Minus |
2L | 6448806..6450132 | 1967..3293 | 100 | <- | Minus |
2L | 6450693..6451014 | 1645..1966 | 100 | <- | Minus |
2L | 6451797..6452055 | 1267..1525 | 100 | <- | Minus |
2L | 6452122..6453057 | 331..1266 | 100 | <- | Minus |
2L | 6455535..6455864 | 1..330 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6451618..6451736 | 1526..1644 | 100 | <- | Minus |
2L | 6448806..6450132 | 1967..3293 | 100 | <- | Minus |
2L | 6450693..6451014 | 1645..1966 | 100 | <- | Minus |
2L | 6451797..6452055 | 1267..1525 | 100 | <- | Minus |
2L | 6452122..6453057 | 331..1266 | 100 | <- | Minus |
2L | 6455535..6455864 | 1..330 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6448806..6450132 | 1967..3293 | 100 | <- | Minus |
arm_2L | 6450693..6451014 | 1645..1966 | 100 | <- | Minus |
arm_2L | 6451618..6451736 | 1526..1644 | 100 | <- | Minus |
arm_2L | 6451797..6452055 | 1267..1525 | 100 | <- | Minus |
arm_2L | 6452122..6453057 | 331..1266 | 100 | <- | Minus |
arm_2L | 6455535..6455864 | 1..330 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6448806..6450132 | 1967..3293 | 100 | <- | Minus |
2L | 6450693..6451014 | 1645..1966 | 100 | <- | Minus |
2L | 6451618..6451736 | 1526..1644 | 100 | <- | Minus |
2L | 6451797..6452055 | 1267..1525 | 100 | <- | Minus |
2L | 6452122..6453057 | 331..1266 | 100 | <- | Minus |
2L | 6455535..6455864 | 1..330 | 100 | Minus |
Translation from 267 to 2246
> FI03669.hyp MVQKFQSPVRVYKYPFELVMKAYERRFPTCPQMPIVLDCEVIKDESLEDG AKRNTSRRCKLAVDAPYIFKKLIGVDHVYFLQHNFLDLANRTLSIEAVNE SFSSRIEIFERCRYYAHPDNSEWTCFDQSATLDIKNFFGFEHSMEKMGMK QYTQTTLKGKEIIEFFIGQLREEGITHVERWTSPSDATKSPTLDQASDQQ HSILLDGDFIARSLGQLSPMQESKLLELRKMLDGVDDLERVPSYQTILRF LAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAVVVEHFPGGWHH LDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAE RLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVL VVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIV PDFLGGPCKTMIHEGGLVPKTLYKMNSLEDHDDEVTAELPTTAAAQALVP GKRLSANQQHDHRNLYKSVDLKAGFAHELLIRNEDPKSVLTWDFDVMRND LHFTLYRVTQELPEKNDSAVSYFDLQDFVEGVNYFREEPTLICRHKESVQ GSHVMHHNDSYLMHWFSPSGAQLNVFYEVLSSANYKGSMTSLQSAFSSNS SAASSVQSR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
retm-PB | 707 | CG9528-PB | 1..659 | 1..659 | 3472 | 100 | Plus |
retm-PC | 659 | CG9528-PC | 1..659 | 1..659 | 3472 | 100 | Plus |
retm-PA | 659 | CG9528-PA | 1..659 | 1..659 | 3472 | 100 | Plus |
CG13893-PA | 407 | CG13893-PA | 5..357 | 214..589 | 276 | 22.2 | Plus |
Translation from 267 to 2246
> FI03669.pep MVQKFQSPVRVYKYPFELVMKAYERRFPTCPQMPIVLDCEVIKDESLEDG AKRNTSRRCKLAVDAPYIFKKLIGVDHVYFLQHNFLDLANRTLSIEAVNE SFSSRIEIFERCRYYAHPDNSEWTCFDQSATLDIKNFFGFEHSMEKMGMK QYTQTTLKGKEIIEFFIGQLREEGITHVERWTSPSDATKSPTLDQASDQQ HSILLDGDFIARSLGQLSPMQESKLLELRKMLDGVDDLERVPSYQTILRF LAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAVVVEHFPGGWHH LDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAE RLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVL VVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIV PDFLGGPCKTMIHEGGLVPKTLYKMNSLEDHDDEVTAELPTTAAAQALVP GKRLSANQQHDHRNLYKSVDLKAGFAHELLIRNEDPKSVLTWDFDVMRND LHFTLYRVTQELPEKNDSAVSYFDLQDFVEGVNYFREEPTLICRHKESVQ GSHVMHHNDSYLMHWFSPSGAQLNVFYEVLSSANYKGSMTSLQSAFSSNS SAASSVQSR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15388-PA | 658 | GF15388-PA | 1..643 | 1..643 | 3185 | 89.6 | Plus |
Dana\GF25037-PA | 407 | GF25037-PA | 5..333 | 214..565 | 276 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23623-PA | 659 | GG23623-PA | 1..659 | 1..659 | 3516 | 98.3 | Plus |
Dere\GG14655-PA | 407 | GG14655-PA | 5..333 | 214..565 | 276 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10983-PA | 657 | GH10983-PA | 1..641 | 1..643 | 3102 | 87.6 | Plus |
Dgri\GH15210-PA | 408 | GH15210-PA | 5..333 | 214..565 | 285 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
retm-PB | 707 | CG9528-PB | 1..659 | 1..659 | 3472 | 100 | Plus |
retm-PC | 659 | CG9528-PC | 1..659 | 1..659 | 3472 | 100 | Plus |
retm-PA | 659 | CG9528-PA | 1..659 | 1..659 | 3472 | 100 | Plus |
CG13893-PA | 407 | CG13893-PA | 5..357 | 214..589 | 276 | 22.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17495-PA | 657 | GI17495-PA | 1..657 | 1..659 | 3145 | 89.4 | Plus |
Dmoj\GI16730-PA | 407 | GI16730-PA | 5..334 | 214..565 | 287 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26257-PA | 665 | GL26257-PA | 1..649 | 1..643 | 3149 | 88.6 | Plus |
Dper\GL22595-PA | 398 | GL22595-PA | 5..324 | 214..565 | 264 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21858-PA | 669 | GA21858-PA | 1..653 | 1..643 | 3134 | 88.1 | Plus |
Dpse\GA12607-PA | 407 | GA12607-PA | 5..333 | 214..565 | 275 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17940-PA | 659 | GM17940-PA | 1..659 | 1..659 | 3550 | 99.2 | Plus |
Dsec\GM14271-PA | 407 | GM14271-PA | 5..333 | 214..565 | 277 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22577-PA | 659 | GD22577-PA | 1..659 | 1..659 | 3545 | 99.2 | Plus |
Dsim\GD13526-PA | 407 | GD13526-PA | 5..333 | 214..565 | 277 | 23.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15159-PA | 657 | GJ15159-PA | 1..641 | 1..643 | 3126 | 88.7 | Plus |
Dvir\GJ12473-PA | 407 | GJ12473-PA | 5..334 | 214..565 | 269 | 24 | Plus |