Clone FI03676 Report

Search the DGRC for FI03676

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:36
Well:76
Vector:pOT2
Associated Gene/TranscriptTsf3-RA
Protein status:FI03676.pep: gold
Sequenced Size:2379

Clone Sequence Records

FI03676.complete Sequence

2379 bp assembled on 2009-09-04

GenBank Submission: BT099700.1

> FI03676.complete
AGCGGTTCGGGCTTGAAGCCAACTAGTCATTGATTAACTAACCTAATCTC
GACTGTTAGACGATCTTCAGTGAGTGAATTGACAATTAACAAGCAGTTGA
CGCAATCGAAGCTCAGAATGCAGTGGCTTACACTTATTTTGGTGGGGCTG
TTTGCCTCGTTCTTATCAATATCGATGTGCGTGGCTGTGCAGCCGCCCGA
TGATGGAAAATTGCGTGTTTGTGTGGTGGAATCGCGTGGCGTTTATCGGA
AAACCCCCAAGTTCTGTCCGCTGCTGGAGGCGAAGAGCAACATCGAGTGC
GTCATCGGCGTGGATCGATTGGATTGCGTGAGGCGTATCCACAAGGGCAC
CGCCCACTTTGGAGTGCTCACCTCGGAGGATCTGGTGGCCGCACGCTGGG
CCAGCGTTGAGATCCTGGTGGCCAGCGAGTTGCGCTCCCATGAGTCGCAC
TTTGAGTACGAAATTGTGGCGGTGGTGGACAACCACGCCAATATCCATAC
TGTTCATGATCTTCGAGGTGCAAGGCTGTGCCATCCTGGCTACGGTCTGG
GCAATCACTGGACGGAGGTCCTGGCTAATTACTTTGAAGCTGCCATGGTC
TCGAAGACTTGTGATCCCGAAATGACCGTCACGGAGGATCGGATAGCATC
CACAGCCAAGTACTTTGGTCCCAGTTGCAAGGCTGGTCCTTGGGTGCCCG
ATCCCAAGCAGGATCGCATCCTAAAGAACCGATATCCCTCGCTGTGCGAG
ATGTGCTACGAACCGGATAGCTGTGACCAGACCGACAAGCATTGGGGACG
CCGCGGAGCTCTCTATTGCCTGACCAGTGGTGGCGGGAATGTGGCCTGGG
CTCGTCTGGATGATGTGCGCAGTCATTTTGGTTTCTCTGGCATTCCGGCC
CAGTCGAATCCCTCGGACTTCAGCTATCTCTGCCCGGATGGTCATCTGCA
GCCATTGAACGCCAGTCAACCATGTGTCTGGGTGGCCAAGCCGTGGCCCG
TGGTGGCTGCCCGTCGCAGCCATGCCGCTCAAGTGCAGCGTCTCGTCACT
GGACTCAATCATGATGAGCCAGATAGTTGGCAGAATGCGCTGCTTAGCCT
GCTGGAGACATATCACGTTTTCACTGTGCCACTGGATAATGTGATAGCTA
TTGATGACTATCTGGACCAGGCCACCGCATTCCAGTCCGCCTACAGCTTC
CCGGAATGCAATCCACCGCGTTCCATTGTATTCTGCACCACGTCCATCAT
CCAGCACATCAAGTGCTCCTGGCTGCAGGAGGCTTCTCAAGTTTATGGTG
TGCAACCGAACATTCAGTGCGTCCGCACCATGGATGAGCAACAGTGCCTG
GATAATACCAAGTTCAAGGAGACAGATGTGGTGTTGGTGGATCAGGAAAT
GCGCGTGAAAGCTCAGCGGGATTACAATCTAGTGCCATTGCTATACGAGT
TCGCAGCGGATATGCATGATCGGTATGTGACTATTGCACTCGTACACAAG
GATGCCAAGTTCGAGAGCTTTAGGGATCTCAAAGGAGCCAGAGCCTGCTT
GCCATCCTTCGAGGGAGCTGCGCATTTGTCCGTTCAGGAGACTATTGTGA
ATGCGACTGGCAAGGTGCAATCGCTGCACTCCTACTTCCACCGCGACTCC
TGTTTGTGGAATCTACAGAGCGGACGCAAGTGTCCTCTTCACTACCAGGG
CGACGAAGGTGCTCTGCGTTGCCTTTCCGAGGGCGCCGATGTGGCCTTCC
TCAGCTCGGATGTGTACAAGAAGTATGTCGTCGGCAATCTCACCTCAAAT
TGGTTGACTCCTGGAAATCACAAGGATTTCCGGGTGTTGTGCCCATACGG
TGGCATTGAGAAGCGCTCCAACTTCGAGTACTGCTACCTGCATTGGACCA
CCCGTGGCCACCTGATGACGCACAACTCTTCGCTGACGCGACGCAATGAG
ATATATAACTCTTTGCGCGATATGGATCAGTTGTTTGGTAGAAAGTACAA
GAGTGAGACGCGTCCATTTACCCTATACGGCATCTTCGATAAAAGGAACA
ATGTGTTGTTCCGTGACGACACCGATGGCCTACTGGGCCTCCAGGAGCTG
CACCGCGACAATGCCAAGCGGGTGATGGAGCACATCTACGATCGGTATGC
CAATACCCAGTACTACAGGAATTTCGACGAGAGTGGAGCCATGAAATCCA
GTCATAACTTATGGATATTGCTTGTCTGCTTATTATTTGTAGTGGGTCAG
CCGTTTGGCTAGACCCGAGCTCAACACTAATCTTATTTATTGTGATATTA
CGCTAAACTTAAGTTAAGAACAACAATGGCTTCAAAACGAGCTTTATCAC
CCAAAAAAAAAAAAAAAAAAAAAAAAAAA

FI03676.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tsf3-RA 2700 Tsf3-RA 173..2527 1..2355 11775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12115722..12117191 883..2352 7350 100 Plus
chr2R 21145070 chr2R 12114914..12115281 212..579 1840 100 Plus
chr2R 21145070 chr2R 12115350..12115652 580..882 1515 100 Plus
chr2R 21145070 chr2R 12113848..12114058 1..211 1055 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:11:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16228400..16229872 883..2355 7365 100 Plus
2R 25286936 2R 16227592..16227959 212..579 1840 100 Plus
2R 25286936 2R 16228028..16228330 580..882 1515 100 Plus
2R 25286936 2R 16226526..16226736 1..211 1055 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16229599..16231071 883..2355 7365 100 Plus
2R 25260384 2R 16228791..16229158 212..579 1840 100 Plus
2R 25260384 2R 16229227..16229529 580..882 1515 100 Plus
2R 25260384 2R 16227725..16227935 1..211 1055 100 Plus
Blast to na_te.dros performed on 2019-03-16 20:08:53 has no hits.

FI03676.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:09:35 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12114914..12115281 212..579 100 -> Plus
chr2R 12115350..12115652 580..882 100 -> Plus
chr2R 12113848..12114058 1..211 100 -> Plus
chr2R 12115722..12117191 883..2352 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:34 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 1..2145 118..2262 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:09:18 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 1..2145 118..2262 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:29 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 1..2145 118..2262 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:53:54 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 1..2145 118..2262 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-04 09:13:27 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 1..2352 1..2352 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:09:18 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 1..2352 1..2352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:29 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 26..2377 1..2352 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:54 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 26..2377 1..2352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:35 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16226526..16226736 1..211 100 -> Plus
2R 16227592..16227959 212..579 100 -> Plus
2R 16228028..16228330 580..882 100 -> Plus
2R 16228400..16229869 883..2352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:35 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16226526..16226736 1..211 100 -> Plus
2R 16227592..16227959 212..579 100 -> Plus
2R 16228028..16228330 580..882 100 -> Plus
2R 16228400..16229869 883..2352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:35 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16226526..16226736 1..211 100 -> Plus
2R 16227592..16227959 212..579 100 -> Plus
2R 16228028..16228330 580..882 100 -> Plus
2R 16228400..16229869 883..2352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:29 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12115533..12115835 580..882 100 -> Plus
arm_2R 12114031..12114241 1..211 100 -> Plus
arm_2R 12115097..12115464 212..579 100 -> Plus
arm_2R 12115905..12117374 883..2352 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:01:11 Download gff for FI03676.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16228791..16229158 212..579 100 -> Plus
2R 16227725..16227935 1..211 100 -> Plus
2R 16229227..16229529 580..882 100 -> Plus
2R 16229599..16231068 883..2352 100   Plus

FI03676.hyp Sequence

Translation from 117 to 2261

> FI03676.hyp
MQWLTLILVGLFASFLSISMCVAVQPPDDGKLRVCVVESRGVYRKTPKFC
PLLEAKSNIECVIGVDRLDCVRRIHKGTAHFGVLTSEDLVAARWASVEIL
VASELRSHESHFEYEIVAVVDNHANIHTVHDLRGARLCHPGYGLGNHWTE
VLANYFEAAMVSKTCDPEMTVTEDRIASTAKYFGPSCKAGPWVPDPKQDR
ILKNRYPSLCEMCYEPDSCDQTDKHWGRRGALYCLTSGGGNVAWARLDDV
RSHFGFSGIPAQSNPSDFSYLCPDGHLQPLNASQPCVWVAKPWPVVAARR
SHAAQVQRLVTGLNHDEPDSWQNALLSLLETYHVFTVPLDNVIAIDDYLD
QATAFQSAYSFPECNPPRSIVFCTTSIIQHIKCSWLQEASQVYGVQPNIQ
CVRTMDEQQCLDNTKFKETDVVLVDQEMRVKAQRDYNLVPLLYEFAADMH
DRYVTIALVHKDAKFESFRDLKGARACLPSFEGAAHLSVQETIVNATGKV
QSLHSYFHRDSCLWNLQSGRKCPLHYQGDEGALRCLSEGADVAFLSSDVY
KKYVVGNLTSNWLTPGNHKDFRVLCPYGGIEKRSNFEYCYLHWTTRGHLM
THNSSLTRRNEIYNSLRDMDQLFGRKYKSETRPFTLYGIFDKRNNVLFRD
DTDGLLGLQELHRDNAKRVMEHIYDRYANTQYYRNFDESGAMKSSHNLWI
LLVCLLFVVGQPFG*

FI03676.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tsf3-PA 714 CG3666-PA 1..714 1..714 3868 100 Plus
Tsf1-PC 641 CG6186-PC 55..454 54..444 450 28.1 Plus
Tsf1-PA 641 CG6186-PA 55..454 54..444 450 28.1 Plus

FI03676.pep Sequence

Translation from 117 to 2261

> FI03676.pep
MQWLTLILVGLFASFLSISMCVAVQPPDDGKLRVCVVESRGVYRKTPKFC
PLLEAKSNIECVIGVDRLDCVRRIHKGTAHFGVLTSEDLVAARWASVEIL
VASELRSHESHFEYEIVAVVDNHANIHTVHDLRGARLCHPGYGLGNHWTE
VLANYFEAAMVSKTCDPEMTVTEDRIASTAKYFGPSCKAGPWVPDPKQDR
ILKNRYPSLCEMCYEPDSCDQTDKHWGRRGALYCLTSGGGNVAWARLDDV
RSHFGFSGIPAQSNPSDFSYLCPDGHLQPLNASQPCVWVAKPWPVVAARR
SHAAQVQRLVTGLNHDEPDSWQNALLSLLETYHVFTVPLDNVIAIDDYLD
QATAFQSAYSFPECNPPRSIVFCTTSIIQHIKCSWLQEASQVYGVQPNIQ
CVRTMDEQQCLDNTKFKETDVVLVDQEMRVKAQRDYNLVPLLYEFAADMH
DRYVTIALVHKDAKFESFRDLKGARACLPSFEGAAHLSVQETIVNATGKV
QSLHSYFHRDSCLWNLQSGRKCPLHYQGDEGALRCLSEGADVAFLSSDVY
KKYVVGNLTSNWLTPGNHKDFRVLCPYGGIEKRSNFEYCYLHWTTRGHLM
THNSSLTRRNEIYNSLRDMDQLFGRKYKSETRPFTLYGIFDKRNNVLFRD
DTDGLLGLQELHRDNAKRVMEHIYDRYANTQYYRNFDESGAMKSSHNLWI
LLVCLLFVVGQPFG*

FI03676.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12273-PA 715 GF12273-PA 1..691 1..691 3427 89.1 Plus
Dana\GF22435-PA 635 GF22435-PA 51..459 54..457 468 28 Plus
Dana\GF25118-PA 831 GF25118-PA 62..310 54..307 177 26.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20582-PA 714 GG20582-PA 1..714 1..714 3676 95.8 Plus
Dere\GG19163-PA 641 GG19163-PA 55..466 54..457 463 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20842-PA 721 GH20842-PA 1..716 1..711 2973 74.2 Plus
Dgri\GH12424-PA 637 GH12424-PA 52..450 54..444 436 27.8 Plus
Dgri\GH16841-PA 844 GH16841-PA 66..323 58..316 161 24.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tsf3-PA 714 CG3666-PA 1..714 1..714 3868 100 Plus
Tsf1-PC 641 CG6186-PC 55..454 54..444 450 28.1 Plus
Tsf1-PA 641 CG6186-PA 55..454 54..444 450 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20947-PA 712 GI20947-PA 5..701 6..703 2935 75.9 Plus
Dmoj\GI15012-PA 638 GI15012-PA 53..451 54..444 444 27.8 Plus
Dmoj\GI13060-PA 851 GI13060-PA 73..299 58..292 160 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17670-PA 714 GL17670-PA 1..694 1..695 3295 85.3 Plus
Dper\GL26971-PA 636 GL26971-PA 54..461 54..457 445 27.9 Plus
Dper\GL24940-PA 369 GL24940-PA 62..310 54..307 167 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17600-PA 714 GA17600-PA 1..692 1..693 3304 85.9 Plus
Dpse\GA22329-PA 640 GA22329-PA 54..457 54..448 408 27 Plus
Dpse\GA10442-PA 836 GA10442-PA 62..310 54..307 170 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21673-PA 714 GM21673-PA 1..714 1..714 3750 96.6 Plus
Dsec\GM22896-PA 641 GM22896-PA 55..466 54..457 461 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11174-PA 319 GD11174-PA 1..305 1..305 1646 99 Plus
Dsim\GD24854-PA 195 GD24854-PA 55..192 54..187 179 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20669-PA 713 GJ20669-PA 1..706 1..710 2978 75.5 Plus
Dvir\GJ15366-PA 638 GJ15366-PA 53..451 54..444 468 28.3 Plus
Dvir\GJ13808-PA 819 GJ13808-PA 62..296 54..296 159 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20628-PA 714 GK20628-PA 4..690 2..693 3152 80.5 Plus
Dwil\GK25660-PA 633 GK25660-PA 47..458 54..457 479 28.3 Plus
Dwil\GK20971-PA 842 GK20971-PA 68..312 58..309 163 25 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11768-PA 714 GE11768-PA 1..714 1..714 3711 95.2 Plus
Dyak\Tsf1-PA 641 GE17726-PA 55..466 54..457 465 28.3 Plus
Dyak\GE20108-PA 819 GE20108-PA 66..297 58..296 173 25.9 Plus