Clone FI03683 Report

Search the DGRC for FI03683

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:36
Well:83
Vector:pOT2
Associated Gene/Transcriptsm-RB
Protein status:FI03683.pep: gold
Sequenced Size:1768

Clone Sequence Records

FI03683.complete Sequence

1768 bp assembled on 2009-09-04

GenBank Submission: BT099712.1

> FI03683.complete
CCTAGGAATACTCAATCCACAAATATATAAAATAAAAAAATCACAAAAAA
AACTGAACATAAAATTTGTGTTGTGTGTTACATTAAACAGTGTTAACTTT
TACCGTGTTACCGACAATTGCTTCATTGCGTACATTGGCTTCGTGTTAAC
TAGTTGATTTTCGGCTGCCCAGAATTAACCCTTAAAGAATCTTTCTAACA
ATTTTCACTGCCGATCGAGTGGTTCTGATTTGTGGCCTTAAGACCCAATT
AAATCAAGTTGCTGCAGCATGAATAACCTGAACGCGAATGCCAGTGCCTT
TTTGTGGCAGGTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGC
AGCAGACGGTGCAGTCGGTGCAGTCCATGCAGTCCGTGCAGCATAGCCAG
CTGCTTCAATCCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAA
GAGCAACTATAACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCG
GTCCAATGGGTGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCAT
TCTATCAACACCTACAATGCTGGCTTATATCAAACCAATGAACCACCGCT
ATTGGGACCCGGAGCCGCTTTCCCACCATTCGGAGCTCCCGAATATCACA
CCACCACACCGGAGAACTGGAAGGGGGCCGCCATCCATCCCACTGGCCTG
ATGAAGGAGCCCGCTGGTGTTGTGCCCGGACGCAATGCTCCGGTGGCCTT
CACACCGCAAGGACAGGCTCAGGGCGCCGTCATGATGGTCTACGGCCTGG
ACCACGACACTTCCAACACGGATAAGCTCTTCAATTTGGTTTGCCTGTAC
GGCAACGTGGCACGGATCAAGTTCTTGAAGACCAAAGAGGGCACCGCCAT
GGTGCAAATGGGAGACGCTGTGGCCGTTGAGCGTTGCGTGCAGCACTTGA
ACAACATTCCCGTGGGCACTGGTGGCAAGATACAGATCGCTTTCTCCAAA
CAGAACTTCCTATCCGAGGTGATCAACCCGTTCTTGCTGCCCGATCATTC
GCCCAGCTTCAAGGAGTACACCGGCTCCAAGAACAATCGTTTCCTATCGC
CGGCCCAGGCGAGCAAGAATCGCATTCAACCACCGAGCAAGATTTTGCAC
TTTTTCAACACACCGCCCGGCTTGACCGAGGACCAACTGATTGGAATCTT
TAACATCAAGGATGTGCCCGCCACATCGGTGCGCCTGTTCCCCTTGAAGA
CCGAGCGCTCGTCGTCGGGACTGATCGAATTTTCCAATATCTCGCAGGCA
GTGCTGGCTATCATGAAGTGCAACCATCTGCCTATTGAGGGTAAAGGCAC
CAAGTTCCCATTCATCATGAAGCTGTGCTTTTCCTCATCCAAGAGCATGA
ACGGCGCCTGGAACAATGCGGCCAGCGAGGGCATGATCGAGAAGGAGAAC
GAGGTGGATACCAAGGTGGACATCTACAATTGAGATTTGATTACGATTGT
GTAAGCAAGCAAACAACAACCGGCTTAACTAGAACACAATACAGAACAAC
ACTGGGGATATGGGTCGCAAACAACGTGCAGAAGACAACAGCAACAGCAA
AATCAGCAACAAATGCGTCACCAACTGCACCAAATGCTGAAACTTCAACT
ACAGATCCACTACGATCCACCAACTTGATGGCTTACACATTCGACAAGAA
AAGCGGGAATTTCAAACAAATTGATTGCTAAATCAATTAAACAAACCAAC
AAAAAAAAAAAAAAAAAA

FI03683.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
sm.l 3697 sm.l 80..1835 1..1756 8780 100 Plus
sm.k 2221 sm.k 80..1835 1..1756 8780 100 Plus
sm.i 2603 sm.i 80..1835 1..1756 8780 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15433668..15434257 590..1 2935 99.8 Minus
chr2R 21145070 chr2R 15417473..15417878 1750..1345 1985 99.3 Minus
chr2R 21145070 chr2R 15419611..15419887 1141..865 1385 100 Minus
chr2R 21145070 chr2R 15419345..15419552 1347..1140 1040 100 Minus
chr2R 21145070 chr2R 15425214..15425397 773..590 920 100 Minus
chr2R 21145070 chr2R 15424961..15425057 865..769 485 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:11:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19546449..19547038 590..1 2950 100 Minus
2R 25286936 2R 19530291..19530702 1756..1345 2060 100 Minus
2R 25286936 2R 19532436..19532712 1141..865 1385 100 Minus
2R 25286936 2R 19532169..19532376 1347..1140 1040 100 Minus
2R 25286936 2R 19538029..19538212 773..590 920 100 Minus
2R 25286936 2R 19537776..19537872 865..769 485 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19547648..19548237 590..1 2950 100 Minus
2R 25260384 2R 19531490..19531901 1756..1345 2060 100 Minus
2R 25260384 2R 19533635..19533911 1141..865 1385 100 Minus
2R 25260384 2R 19533368..19533575 1347..1140 1040 100 Minus
2R 25260384 2R 19539228..19539411 773..590 920 100 Minus
2R 25260384 2R 19538975..19539071 865..769 485 100 Minus
Blast to na_te.dros performed 2019-03-15 14:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2527..2719 1512..1702 222 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2446 1514..1653 149 60.8 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3285..3374 1572..1666 147 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2454 1579..1667 145 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6762..6850 1570..1654 138 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..2453 1554..1721 133 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6805 1586..1654 129 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6825 1570..1653 125 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6872..6923 1579..1631 118 71.7 Plus

FI03683.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:54:07 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15417473..15417876 1347..1750 99 <- Minus
chr2R 15419346..15419550 1142..1346 100 <- Minus
chr2R 15419611..15419886 866..1141 100 <- Minus
chr2R 15424961..15425053 773..865 100 <- Minus
chr2R 15425215..15425396 591..772 100 <- Minus
chr2R 15433668..15434257 1..590 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:03:08 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 1..1215 269..1483 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:09:43 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 1..1215 269..1483 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:47:48 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 1..1215 269..1483 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:13:27 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 1..1215 269..1483 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:03:07 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 1..1745 6..1750 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:09:43 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 17..1766 1..1750 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:47:48 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 34..1783 1..1750 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:13:27 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
sm-RB 34..1783 1..1750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:07 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19538030..19538211 591..772 100 <- Minus
2R 19530297..19530700 1347..1750 100 <- Minus
2R 19532170..19532374 1142..1346 100 <- Minus
2R 19532436..19532711 866..1141 100 <- Minus
2R 19537776..19537868 773..865 100 <- Minus
2R 19546449..19547038 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:07 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19538030..19538211 591..772 100 <- Minus
2R 19530297..19530700 1347..1750 100 <- Minus
2R 19532170..19532374 1142..1346 100 <- Minus
2R 19532436..19532711 866..1141 100 <- Minus
2R 19537776..19537868 773..865 100 <- Minus
2R 19546449..19547038 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:07 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19538030..19538211 591..772 100 <- Minus
2R 19530297..19530700 1347..1750 100 <- Minus
2R 19532170..19532374 1142..1346 100 <- Minus
2R 19532436..19532711 866..1141 100 <- Minus
2R 19537776..19537868 773..865 100 <- Minus
2R 19546449..19547038 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:47:48 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15417802..15418205 1347..1750 100 <- Minus
arm_2R 15419675..15419879 1142..1346 100 <- Minus
arm_2R 15419941..15420216 866..1141 100 <- Minus
arm_2R 15425281..15425373 773..865 100 <- Minus
arm_2R 15425535..15425716 591..772 100 <- Minus
arm_2R 15433954..15434543 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:01:28 Download gff for FI03683.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19531496..19531899 1347..1750 100 <- Minus
2R 19533369..19533573 1142..1346 100 <- Minus
2R 19533635..19533910 866..1141 100 <- Minus
2R 19538975..19539067 773..865 100 <- Minus
2R 19539229..19539410 591..772 100 <- Minus
2R 19547648..19548237 1..590 100   Minus

FI03683.hyp Sequence

Translation from 268 to 1482

> FI03683.hyp
MNNLNANASAFLWQVPPPQQLTPQSVQQQTVQSVQSMQSVQHSQLLQSAV
VSQPRKFGGNKSNYNYMQNHAIMGPGGGPMGGIGGNPNIYRKRHSINTYN
AGLYQTNEPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAG
VVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARI
KFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSE
VINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPP
GLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMK
CNHLPIEGKGTKFPFIMKLCFSSSKSMNGAWNNAASEGMIEKENEVDTKV
DIYN*

FI03683.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
sm-PB 404 CG9218-PB 1..404 1..404 2134 100 Plus
sm-PI 420 CG9218-PI 1..420 1..404 2104 96 Plus
sm-PJ 464 CG9218-PJ 1..464 1..404 1691 75.4 Plus
sm-PK 535 CG9218-PK 234..535 103..404 1579 99.3 Plus
sm-PAC 301 CG9218-PAC 4..301 107..404 1563 99.3 Plus

FI03683.pep Sequence

Translation from 268 to 1482

> FI03683.pep
MNNLNANASAFLWQVPPPQQLTPQSVQQQTVQSVQSMQSVQHSQLLQSAV
VSQPRKFGGNKSNYNYMQNHAIMGPGGGPMGGIGGNPNIYRKRHSINTYN
AGLYQTNEPPLLGPGAAFPPFGAPEYHTTTPENWKGAAIHPTGLMKEPAG
VVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARI
KFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGTGGKIQIAFSKQNFLSE
VINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKNRIQPPSKILHFFNTPP
GLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSGLIEFSNISQAVLAIMK
CNHLPIEGKGTKFPFIMKLCFSSSKSMNGAWNNAASEGMIEKENEVDTKV
DIYN*

FI03683.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13176-PA 421 GF13176-PA 1..421 1..404 1732 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20899-PA 423 GG20899-PA 11..423 11..404 1834 88.9 Plus
Dere\GG11844-PA 800 GG11844-PA 607..795 171..365 180 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22768-PA 482 GH22768-PA 169..482 88..404 1504 89.3 Plus
Dgri\GH17472-PA 920 GH17472-PA 727..915 171..365 190 27.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
sm-PB 404 CG9218-PB 1..404 1..404 2134 100 Plus
sm-PI 420 CG9218-PI 1..420 1..404 2104 96 Plus
sm-PJ 464 CG9218-PJ 1..464 1..404 1691 75.4 Plus
sm-PV 540 CG9218-PV 239..540 103..404 1579 99.3 Plus
sm-PT 552 CG9218-PT 251..552 103..404 1579 99.3 Plus
sm-PK 535 CG9218-PK 234..535 103..404 1579 99.3 Plus
sm-PE 475 CG9218-PE 177..475 106..404 1566 99.3 Plus
sm-PA 475 CG9218-PA 177..475 106..404 1566 99.3 Plus
sm-PM 497 CG9218-PM 201..497 108..404 1565 100 Plus
sm-PL 492 CG9218-PL 196..492 108..404 1565 100 Plus
sm-PAC 301 CG9218-PAC 4..301 107..404 1563 99.3 Plus
sm-PAA 508 CG9218-PAA 211..508 107..404 1563 99.3 Plus
sm-PZ 491 CG9218-PZ 194..491 107..404 1563 99.3 Plus
sm-PU 515 CG9218-PU 218..515 107..404 1563 99.3 Plus
sm-PAB 509 CG9218-PAB 213..509 108..404 1562 99.7 Plus
sm-PP 434 CG9218-PP 138..434 108..404 1561 99.7 Plus
sm-PH 480 CG9218-PH 184..480 108..404 1561 99.7 Plus
sm-PO 494 CG9218-PO 199..494 107..404 1539 98.7 Plus
sm-PY 260 CG9218-PY 1..260 145..404 1351 100 Plus
sm-PW 260 CG9218-PW 1..260 145..404 1351 100 Plus
sm-PG 260 CG9218-PG 1..260 145..404 1351 100 Plus
heph-PQ 493 CG31000-PQ 292..488 163..365 178 25.6 Plus
heph-PM 568 CG31000-PM 367..563 163..365 178 25.6 Plus
heph-PU 581 CG31000-PU 380..576 163..365 178 25.6 Plus
heph-PT 581 CG31000-PT 380..576 163..365 178 25.6 Plus
heph-PS 581 CG31000-PS 380..576 163..365 178 25.6 Plus
heph-PC 581 CG31000-PC 380..576 163..365 178 25.6 Plus
heph-PZ 604 CG31000-PZ 403..599 163..365 178 25.6 Plus
heph-PV 608 CG31000-PV 407..603 163..365 178 25.6 Plus
heph-PP 608 CG31000-PP 407..603 163..365 178 25.6 Plus
heph-PN 608 CG31000-PN 407..603 163..365 178 25.6 Plus
heph-PB 608 CG31000-PB 407..603 163..365 178 25.6 Plus
heph-PK 608 CG31000-PK 407..603 163..365 178 25.6 Plus
heph-PJ 608 CG31000-PJ 407..603 163..365 178 25.6 Plus
heph-PI 608 CG31000-PI 407..603 163..365 178 25.6 Plus
heph-PE 608 CG31000-PE 407..603 163..365 178 25.6 Plus
heph-PD 608 CG31000-PD 407..603 163..365 178 25.6 Plus
heph-PA 608 CG31000-PA 407..603 163..365 178 25.6 Plus
heph-PF 608 CG31000-PF 407..603 163..365 178 25.6 Plus
heph-PG 615 CG31000-PG 414..610 163..365 178 25.6 Plus
heph-PL 622 CG31000-PL 421..617 163..365 178 25.6 Plus
heph-PR 789 CG31000-PR 588..784 163..365 178 25.6 Plus
heph-PO 789 CG31000-PO 588..784 163..365 178 25.6 Plus
heph-PH 789 CG31000-PH 588..784 163..365 178 25.6 Plus
heph-PW 799 CG31000-PW 598..794 163..365 178 25.6 Plus
heph-PY 898 CG31000-PY 697..893 163..365 178 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18546-PA 481 GI18546-PA 168..481 88..404 1508 89.3 Plus
Dmoj\GI22798-PA 834 GI22798-PA 641..829 171..365 190 27 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11734-PA 325 GL11734-PA 108..290 185..372 845 87.2 Plus
Dper\GL24102-PA 494 GL24102-PA 309..489 177..365 179 27.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30475-PB 412 GA30475-PB 1..412 1..404 1698 82.9 Plus
Dpse\GA30475-PE 514 GA30475-PE 1..514 1..404 1674 67.5 Plus
Dpse\GA30475-PD 428 GA30475-PD 1..428 1..404 1668 79.6 Plus
Dpse\GA30475-PC 352 GA30475-PC 51..352 103..404 1551 95.7 Plus
Dpse\GA30475-PA 498 GA30475-PA 199..498 105..404 1545 95.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\sm-PA 420 GM19822-PA 1..420 1..404 1830 92.4 Plus
Dsec\GM16408-PA 792 GM16408-PA 599..787 171..365 180 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\sm-PA 388 GD25314-PA 194..388 107..301 1014 96.4 Plus
Dsim\GD16206-PA 792 GD16206-PA 599..787 171..365 179 26.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21415-PA 480 GJ21415-PA 168..480 88..404 1462 87.7 Plus
Dvir\GJ22800-PA 818 GJ22800-PA 625..813 171..365 190 27 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15699-PA 478 GK15699-PA 180..478 106..404 1550 96 Plus
Dwil\GK10936-PA 629 GK10936-PA 329..557 112..353 182 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13838-PA 491 GE13838-PA 194..491 107..404 1571 98.3 Plus
Dyak\GE23291-PA 802 GE23291-PA 609..797 171..365 186 26.6 Plus