Clone FI03727 Report

Search the DGRC for FI03727

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:37
Well:27
Vector:pOT2
Associated Gene/TranscriptKap-alpha1-RA
Protein status:FI03727.pep: gold
Sequenced Size:2327

Clone Sequence Records

FI03727.complete Sequence

2327 bp assembled on 2009-05-13

GenBank Submission: BT083428.1

> FI03727.complete
ATCCCCGTTCCTCACAACGTGTAAAATCTCCCGTCCCCTTGCATGATTAA
GACGAGAAAAGGATTCTCCGGAACAGCTTTTGAATTGCCAAGACGACGAA
ATGTCTGCCAGCCACAAACAGCGTTATAAAAATGCCGCCTTGGACTCCAC
AGAGATGCGTCGTCGTCGCGAGGAGGTGGGCATCCAGTTGCGAAAAAACA
AACGCGAACAGCAGCTCTTTAAGCGACGCAATGTGGTTCTTGAGCCGGCT
ACATCCTCAACATCAGCCGGAGTGGAGAGCAACACCGATAACGAACAGCA
GGCTGCCGACATGCACATGGCTGACAGCAGCACTGGCGGTCAAAACGAGG
AAGCTGCTGGAAGCGGGGCACAGCCATCCGTAATCAACGAGGAAATGATT
CAAATGCTCTTCAGTGGACGTGAAAACGAACAGCTTGAGGCGACTCAAAA
GTTCCGCAAACTGCTGTCCCGCGATCCCAATCCTCCCATTGAGGAAGTCA
TCCAGAAGGGGATAGTGCCACAGTTTGTCACCTTTTTGCGAAATAGCGCA
AATGCCACGCTGCAGTTCGAGGCCGCCTGGACGCTAACGAACATCGCATC
GGGCACCTCGCAACAGACCAAGGTGGTTATCGAGGCCGGGGCAGTGCCTA
TCTTCATTGATTTGCTCTCCAGTCCCCATGATGATGTTCAGGAACAGGCC
GTGTGGGCCCTAGGCAACATAGCCGGTGACTCACCCATGTGTCGAGACCA
TTTGCTCGGCTCCGGCATTCTAGAGCCTCTCCTGCATGTATTGAGCAACT
CGGATCGCATTACCATGATACGGAATGCGGTGTGGACACTTTCAAACTTG
TGCCGCGGCAAAAGCCCTCCCGCAGACTTTGCCAAAATTAGCCATGGTCT
ACCAATACTGGCACGGTTGCTGAAGTACACTGATGCGGATGTACTAAGCG
ATACTTGCTGGGCCATAGGCTACCTGTCAGATGGTCCCAATGATAAAATC
CAGGCTGTAATTGATGCGGGTGTTTGCCGTCGCCTGGTTGAGCTGCTATT
ACATCCTCAGCAGAACGTGAGCACAGCTGCTCTGAGGGCCGTGGGCAATA
TTGTGACAGGCGACGATCAGCAGACCCAGGTGATATTGGGGTACAACGCT
TTGACCTGCATTAGCCACCTGCTGCATTCGACGGCGGAAACAATCAAGAA
GGAGTCGTGCTGGACAATCTCAAATATTGCAGCCGGCAATCGTGAGCAGA
TCCAGGCCTTAATCAATGCCAACATATTCCCGCAGCTGATGGTTATCATG
CAGACGGCCGAATTTAAGACTCGCAAGGAGGCCGCATGGGCCATTACCAA
CGCAACCAGCAGCGGTACGCACGAACAGATCCACTACCTGGTGCAGGTTG
GCTGTGTGCCGCCCATGTGCGATTTTCTCACCGTCGTCGACTCGGACATC
GTCCAAGTGGCGCTAAATGCACTTGAAAACATTTTGAAGGCAGGTGAAAA
GTTCCAGACGCGACCAAATCCCTATGCTATTACCATCGAGGAATGCGGAG
GTTTGGACAAAATAGAGTATCTGCAGGCGCATGAAAACCGCGACATCTAC
CACAAATCATTTTACATTATCGAACAGTACTTCGGCAACGAAGAGGAGGA
TAGCCGGGTGGCTCCCGTGGCAGGCACGCAACAGTTTGAGTTCGATCCGG
ACAACATGCCCAGCACCGGATTTAACTTTTAGCACCCTACCGCGCAGGAC
ATCGTTTAACTATTCAAATACGAATCCCTCAAGTCCTAAACACACAGAAG
CATATGCAACAGGAAGCGAAGCCTTGCCGCCGGGATTTAAATGAAGGCGG
CCAGAGCACGGACATGAAAAATAGACCGCATGAGAAGGCGTCTGCCTTGC
CCAAGTGCAGTCACTACTAGCATTTAAGGAAAGATGGTCGTTCGGTCGGC
TCGTTTCTTTGTTACAATCACTCACCTGCTTATTGTATCAGCGTTTAGTT
CTATAATTTTCGAAGTGGTCCAGGACCAGGCATGACGAGATTGCTTTCAT
TTAGTTCGATTGTACTAATTTAATATGTTATACAGAACCCATTGTATATG
TTTTTGCTTTCCTCAAATTGAGTCTGTAAATATTTTCCATTTTATATATA
TATTTTCCAGCCCAAGTACGATGAGATCCTCACATGGTGTTGTTATACAT
TCTGATTCATTTGATCATTTTGTTATGCGAATCGCCGAATGTAAATTTGT
TTAAATTATAAAGCATTGTAATTTAATTTAGAGGACATCAATAAACAACA
TCTAGACCACAAAAAAAAAAAAAAAAA

FI03727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
Kap-alpha1-RA 2419 Kap-alpha1-RA 45..2355 1..2311 11555 100 Plus
Kap-alpha1.b 2359 Kap-alpha1.b 59..2295 75..2311 11185 100 Plus
Kap-alpha1.a 2329 Kap-alpha1.a 70..2304 77..2311 11175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19799014..19799775 1549..2310 3810 100 Plus
chr3L 24539361 chr3L 19798452..19798953 1051..1552 2510 100 Plus
chr3L 24539361 chr3L 19797573..19798061 298..786 2445 100 Plus
chr3L 24539361 chr3L 19798121..19798384 787..1050 1320 100 Plus
chr3L 24539361 chr3L 19797288..19797515 75..302 1140 100 Plus
chr3L 24539361 chr3L 19796621..19796696 1..76 380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:11:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19809637..19810399 1549..2311 3815 100 Plus
3L 28110227 3L 19809075..19809576 1051..1552 2510 100 Plus
3L 28110227 3L 19808196..19808684 298..786 2445 100 Plus
3L 28110227 3L 19808744..19809007 787..1050 1320 100 Plus
3L 28110227 3L 19807911..19808138 75..302 1140 100 Plus
3L 28110227 3L 19807244..19807319 1..76 380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19802737..19803499 1549..2311 3815 100 Plus
3L 28103327 3L 19802175..19802676 1051..1552 2510 100 Plus
3L 28103327 3L 19801296..19801784 298..786 2445 100 Plus
3L 28103327 3L 19801844..19802107 787..1050 1320 100 Plus
3L 28103327 3L 19801011..19801238 75..302 1140 100 Plus
3L 28103327 3L 19800344..19800419 1..76 380 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:29:49 has no hits.

FI03727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:30:50 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19796621..19796696 1..76 100 -> Plus
chr3L 19797290..19797514 77..301 100 -> Plus
chr3L 19797577..19798061 302..786 100 -> Plus
chr3L 19798121..19798384 787..1050 100 -> Plus
chr3L 19798452..19798951 1051..1550 100 -> Plus
chr3L 19799016..19799775 1551..2310 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:53:32 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 1..1632 101..1732 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:51:58 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 1..1632 101..1732 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:56:11 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 1..1632 101..1732 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:34 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 1..1632 101..1732 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 15:55:49 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 1..2307 4..2310 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:51:58 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 1..2307 4..2310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:11 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 13..2322 1..2310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:34 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
Kap-alpha1-RA 13..2322 1..2310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:50 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19807244..19807319 1..76 100 -> Plus
3L 19807913..19808137 77..301 100 -> Plus
3L 19808200..19808684 302..786 100 -> Plus
3L 19808744..19809007 787..1050 100 -> Plus
3L 19809075..19809574 1051..1550 100 -> Plus
3L 19809639..19810398 1551..2310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:50 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19807244..19807319 1..76 100 -> Plus
3L 19807913..19808137 77..301 100 -> Plus
3L 19808200..19808684 302..786 100 -> Plus
3L 19808744..19809007 787..1050 100 -> Plus
3L 19809075..19809574 1051..1550 100 -> Plus
3L 19809639..19810398 1551..2310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:30:50 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19807244..19807319 1..76 100 -> Plus
3L 19807913..19808137 77..301 100 -> Plus
3L 19808200..19808684 302..786 100 -> Plus
3L 19808744..19809007 787..1050 100 -> Plus
3L 19809075..19809574 1051..1550 100 -> Plus
3L 19809639..19810398 1551..2310 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:11 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19800344..19800419 1..76 100 -> Plus
arm_3L 19801013..19801237 77..301 100 -> Plus
arm_3L 19801300..19801784 302..786 100 -> Plus
arm_3L 19801844..19802107 787..1050 100 -> Plus
arm_3L 19802175..19802674 1051..1550 100 -> Plus
arm_3L 19802739..19803498 1551..2310 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:42:45 Download gff for FI03727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19801013..19801237 77..301 100 -> Plus
3L 19801300..19801784 302..786 100 -> Plus
3L 19801844..19802107 787..1050 100 -> Plus
3L 19802175..19802674 1051..1550 100 -> Plus
3L 19802739..19803498 1551..2310 100   Plus
3L 19800344..19800419 1..76 100 -> Plus

FI03727.pep Sequence

Translation from 100 to 1731

> FI03727.pep
MSASHKQRYKNAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNVVLEPA
TSSTSAGVESNTDNEQQAADMHMADSSTGGQNEEAAGSGAQPSVINEEMI
QMLFSGRENEQLEATQKFRKLLSRDPNPPIEEVIQKGIVPQFVTFLRNSA
NATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDVQEQA
VWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNL
CRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKI
QAVIDAGVCRRLVELLLHPQQNVSTAALRAVGNIVTGDDQQTQVILGYNA
LTCISHLLHSTAETIKKESCWTISNIAAGNREQIQALINANIFPQLMVIM
QTAEFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDSDI
VQVALNALENILKAGEKFQTRPNPYAITIEECGGLDKIEYLQAHENRDIY
HKSFYIIEQYFGNEEEDSRVAPVAGTQQFEFDPDNMPSTGFNF*

FI03727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23594-PA 547 GF23594-PA 1..547 1..543 2580 87 Plus
Dana\GF16531-PA 514 GF16531-PA 10..514 7..543 1214 45.5 Plus
Dana\GF15741-PA 522 GF15741-PA 6..522 2..543 1017 42 Plus
Dana\GF21735-PA 602 GF21735-PA 13..602 9..543 821 33.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16059-PA 549 GG16059-PA 1..549 1..543 2739 92.7 Plus
Dere\GG17355-PA 514 GG17355-PA 10..514 7..543 1226 45.8 Plus
Dere\GG10083-PA 522 GG10083-PA 6..522 2..543 1022 42.2 Plus
Dere\GG14095-PA 441 GG14095-PA 45..435 120..513 457 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14657-PA 549 GH14657-PA 1..549 1..543 2522 85.6 Plus
Dgri\GH19298-PA 513 GH19298-PA 10..513 7..543 1206 45.7 Plus
Dgri\GH11072-PA 522 GH11072-PA 6..522 2..543 1034 42 Plus
Dgri\GH20236-PA 464 GH20236-PA 35..464 111..543 738 38.9 Plus
Dgri\GH11093-PA 432 GH11093-PA 4..413 81..495 691 38.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Kap-alpha1-PA 543 CG8548-PA 1..543 1..543 2794 100 Plus
Kap-alpha3-PD 514 CG9423-PD 4..514 1..543 1185 45.9 Plus
Kap-alpha3-PC 514 CG9423-PC 4..514 1..543 1185 45.9 Plus
Kap-alpha3-PB 514 CG9423-PB 4..514 1..543 1185 45.9 Plus
Kap-alpha3-PA 514 CG9423-PA 4..514 1..543 1185 45.9 Plus
Pen-PA 522 CG4799-PA 6..522 2..543 1048 42.2 Plus
alphaKap4-PA 442 CG10478-PA 45..432 120..511 456 30.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11643-PA 542 GI11643-PA 1..542 1..543 2489 84.3 Plus
Dmoj\GI23514-PA 513 GI23514-PA 10..513 7..543 1210 46.2 Plus
Dmoj\GI17589-PA 522 GI17589-PA 13..522 9..543 1057 42.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15735-PA 548 GL15735-PA 1..548 1..543 2514 84.8 Plus
Dper\GL21493-PA 514 GL21493-PA 10..514 7..543 1238 46.4 Plus
Dper\GL18958-PA 522 GL18958-PA 13..522 9..543 1012 42.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21156-PA 548 GA21156-PA 1..548 1..543 2514 84.8 Plus
Dpse\GA21775-PB 514 GA21775-PB 10..514 7..543 1238 46.4 Plus
Dpse\GA21775-PA 514 GA21775-PA 10..514 7..543 1238 46.4 Plus
Dpse\GA18440-PA 522 GA18440-PA 13..522 9..543 1011 42.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19652-PA 543 GM19652-PA 1..543 1..543 2839 96.9 Plus
Dsec\GM26241-PA 514 GM26241-PA 4..514 1..543 1204 45.5 Plus
Dsec\GM17916-PA 522 GM17916-PA 6..522 2..543 1021 42.2 Plus
Dsec\GM13879-PA 442 GM13879-PA 45..432 120..511 392 28.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14829-PA 543 GD14829-PA 1..543 1..543 2842 97.1 Plus
Dsim\GD23655-PA 524 GD23655-PA 6..524 2..543 1008 42.1 Plus
Dsim\GD20781-PA 501 GD20781-PA 117..501 158..543 984 49 Plus
Dsim\GD13348-PA 204 GD13348-PA 1..190 1..192 905 92.7 Plus
Dsim\GD17931-PA 171 GD17931-PA 2..169 226..393 862 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11324-PA 556 GJ11324-PA 1..556 1..543 2480 84.4 Plus
Dvir\GJ10266-PA 513 GJ10266-PA 10..513 7..543 1207 45.8 Plus
Dvir\GJ17933-PA 521 GJ17933-PA 6..521 2..543 1046 41.6 Plus
Dvir\GJ14921-PA 470 GJ14921-PA 6..470 2..543 827 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17499-PA 565 GK17499-PA 1..565 1..543 2467 82 Plus
Dwil\GK17501-PA 535 GK17501-PA 3..535 2..543 1263 46.9 Plus
Dwil\GK14517-PA 514 GK14517-PA 10..514 7..543 1237 46 Plus
Dwil\GK18399-PA 522 GK18399-PA 8..522 4..543 1028 42.6 Plus
Dwil\GK23224-PA 491 GK23224-PA 56..470 98..511 772 41.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19625-PA 549 GE19625-PA 1..549 1..543 2759 93.3 Plus
Dyak\GE24760-PA 514 GE24760-PA 10..514 7..543 1231 46 Plus
Dyak\GE18896-PA 522 GE18896-PA 6..522 2..543 1062 42.6 Plus
Dyak\GE20518-PA 433 GE20518-PA 45..433 120..513 473 30.3 Plus

FI03727.hyp Sequence

Translation from 100 to 1731

> FI03727.hyp
MSASHKQRYKNAALDSTEMRRRREEVGIQLRKNKREQQLFKRRNVVLEPA
TSSTSAGVESNTDNEQQAADMHMADSSTGGQNEEAAGSGAQPSVINEEMI
QMLFSGRENEQLEATQKFRKLLSRDPNPPIEEVIQKGIVPQFVTFLRNSA
NATLQFEAAWTLTNIASGTSQQTKVVIEAGAVPIFIDLLSSPHDDVQEQA
VWALGNIAGDSPMCRDHLLGSGILEPLLHVLSNSDRITMIRNAVWTLSNL
CRGKSPPADFAKISHGLPILARLLKYTDADVLSDTCWAIGYLSDGPNDKI
QAVIDAGVCRRLVELLLHPQQNVSTAALRAVGNIVTGDDQQTQVILGYNA
LTCISHLLHSTAETIKKESCWTISNIAAGNREQIQALINANIFPQLMVIM
QTAEFKTRKEAAWAITNATSSGTHEQIHYLVQVGCVPPMCDFLTVVDSDI
VQVALNALENILKAGEKFQTRPNPYAITIEECGGLDKIEYLQAHENRDIY
HKSFYIIEQYFGNEEEDSRVAPVAGTQQFEFDPDNMPSTGFNF*

FI03727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Kap-alpha1-PA 543 CG8548-PA 1..543 1..543 2794 100 Plus
Kap-alpha3-PD 514 CG9423-PD 4..514 1..543 1185 45.9 Plus
Kap-alpha3-PC 514 CG9423-PC 4..514 1..543 1185 45.9 Plus
Kap-alpha3-PB 514 CG9423-PB 4..514 1..543 1185 45.9 Plus
Kap-alpha3-PA 514 CG9423-PA 4..514 1..543 1185 45.9 Plus