BDGP Sequence Production Resources |
Search the DGRC for FI04011
Library: | FI |
Tissue Source: | various Drosophila melanogaster |
Created by: | |
Date Registered: | 2005-11-08 |
Comments: | Drosophila melanogaster corrected cDNA clones |
Original Plate Number: | 40 |
Well: | 11 |
Vector: | pBS SK- |
Associated Gene/Transcript | XRCC1-RA |
Protein status: | FI04011.pep: gold |
Sequenced Size: | 2323 |
2323 bp assembled on 2008-12-22
GenBank Submission: BT056252.1
> FI04011.complete CAAAATCAGCATAATTCACCGCCCATCATCAAAAGATAAAAGAAATAAAC AAACATTCTAGCGCACATGGCAACACATGCAACCGACGCAATTCCCTTTC GACAATCAGTTTAATCGCAGGCGCAACTGTCGGCAAAGCAATTTGCCGCA AAATCATCGGCGTCTCAGTGTAAATTCATGCGACTTGCGAAATGCCAATT GCGCTTTTCAAGTCCGTACGCGAAGTGAGCAGCGAAGATGCGGTGCACGT AGCGGCGAATCTGCTCAAGGAAAACGCCGGCAAGAAGTGGCGAACCAAGG CGCCGGGAGAGAAATCCGCATACGTTGTGCTGGAGTTCGAGGAGCCGCAA CAGATTACGGGCATCGATATTGGCAACGAACATGCCGCCTTCATCGAGGT GCTGGTCAGTCGAACAGGCTGCCAGGCGGACGATTTCCGCGAGCTGCTGC TATCCAGTTCGTTTATGACGCCCATCGAGAGCAAGAATTCCAGCAATCCA AATCGCGTTCGCTGTTTCAGTAGCACTTCGCTGGCGGAGAGTGCACTGCC GGAGAAGTGGAAGCTGCTTCAGATAGTCTGCACACAGCCCTTCAATCGTC ATGTGCCATACGGGCTCTCATTCGTCAAGGTGCATGTAGTGGCTGCTGCG GCGCCTAAGGTCAAATCCCTAGTGCCGCAGGGTGTTATGCAATTCGGGAC CTTTAAGCTGCGCGAGGAGTCGCCGGACTCGGAAACGGACAATCAAGTGA ACAGATTTCACAGCTGGAAGAAGCAGACGCAGCACAAGTCGCCCGCGATC AGTGCGACCTCCACAGCAGCGGCCATTCGGGACGCCGGCTCCACGGCCCT GCGAAGGCTGAGCGCTGGCAAGGTTTCTAGCCTGGCTGCATCGCCCAAAA CCTCGACGTCGCCATCACCAGTTCTCAATGCTCTGCGATCGGTTTCTCCG ACGCCATTGGATGCCAAGCCCCTGGATCGCAATCGAGCTTCACTCTTGTT CGGCGACGATGATGAGGACGTGAAGGACGCTGAGGTCAATGCAAAGAAAC AACGGCTGAGCAAGCATCTGGAGGCGGACAAGGATCGACGGCGATTGGAG CAGGAAAAGGAGAGGGAGAGCAGAAAGAAAAAGTCAAGCAGGCACTCCTT GGATAAGTCAATCAGCAAAGAAGACAAACCACCGGCAAAGGAGCACAATT CGTCCTCCAGAGAAAAATCCACAGCCAAAGAAGAGAAAGAGCAATTACGA AAAGAGGAAAGATCGCATTCGAAGGAGGAGAAGTCCAGGAGGAAGGAGAA ATCTAAGCATGATCACAGATCTTCGGACACCTCGAATTCCAAGGAAAGTT CGCGCCCAACTGCGCAAAAGCGACATTCATCTCCCACCGCAGTCGCAGTA ACGCCCGCCAAAAAGCAAAAGATCGTGGACACAGCGATTCAATACCGTCC CCTTAATCAGTTACTCAAGGGTGTGGTCCTGGTCATCAGTGGCATACAGA ATCCCGATCGTGCAGACTTGCGTTCGAAAGCGGTCGCCTTGGGAGCCAAG TATAAGGCTGATTGGGGATCAGGATGTACCCATCTGATATGCGCATTCAA AAACACACCGAAATACAATCAAGTGAAGGGCAAGGGCAAGATTGTGACAC GCAGTTGGATCGAGAAATGTTATGAGCTGAAGAAGTACCTGCCATGGCGA CGTTACGCCCTGGATACCAATGACATTGGCCAGCCGGAGAGCGATGAGGA GCTTTGCGATGAGGCGACGAGGCCACGGCGCGATTCCAGCAAGGATGATG TGGCAATGCTAGAGGATAGCAAGCTAACAGCTCTAGCGGATCAGAATGAT GTGGAAATGAATCCAGATGCCTTATCGGGCATTGATACGGAAGATGAACT GCAGCGCGTGGCTGAGGAAAACAAAACGAAGAAAGCCAAACTAAGGACTA CAGTAAAGACGAAATCGCAAGATATATACGAAGTTAGTACCGATGAAGAG GATTATCTGGAGCTAAAGAAGAAACAAATCGATTAGGTGCCATTTCTAAC CTCATCTCATATTTTGTATACGACTTTATTACTTAAATTGCTTGTAATGT GCAAGTATCATATTTTTGTACTTTGTTAATCGAATATGCTCGTTATCAAA AATTCGACAAATTCAAAATAAGTGATTAGTTTGGACCATTTTGAAAAAAG AGCCCAAGGAATAAATATTGATATTATAATAGATCTATCGCATGTTCATT TAAAAAAAACTATCAAATAAACCACCTCTGGGCTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
XRCC1-RA | 2348 | XRCC1-RA | 65..2348 | 1..2284 | 11420 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5222762..5224019 | 242..1499 | 6260 | 99.8 | Plus |
chrX | 22417052 | chrX | 5224617..5224986 | 1917..2284 | 1770 | 99.2 | Plus |
chrX | 22417052 | chrX | 5224231..5224559 | 1589..1917 | 1555 | 98.2 | Plus |
chrX | 22417052 | chrX | 5222457..5222704 | 1..245 | 1160 | 98.8 | Plus |
chrX | 22417052 | chrX | 5224077..5224168 | 1497..1588 | 430 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 5330213..5331470 | 242..1499 | 6290 | 100 | Plus |
X | 23542271 | X | 5332068..5332437 | 1917..2286 | 1850 | 100 | Plus |
X | 23542271 | X | 5331682..5332010 | 1589..1917 | 1645 | 100 | Plus |
X | 23542271 | X | 5329911..5330155 | 1..245 | 1225 | 100 | Plus |
X | 23542271 | X | 5331528..5331619 | 1497..1588 | 460 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 5338311..5339568 | 242..1499 | 6290 | 100 | Plus |
X | 23527363 | X | 5340166..5340535 | 1917..2286 | 1850 | 100 | Plus |
X | 23527363 | X | 5339780..5340108 | 1589..1917 | 1645 | 100 | Plus |
X | 23527363 | X | 5338009..5338253 | 1..245 | 1225 | 100 | Plus |
X | 23527363 | X | 5339626..5339717 | 1497..1588 | 460 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Penelope | 4158 | Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). | 3330..3445 | 2159..2276 | 133 | 63.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5222457..5222701 | 1..242 | 98 | -> | Plus |
chrX | 5222763..5224019 | 243..1499 | 99 | -> | Plus |
chrX | 5224080..5224168 | 1500..1588 | 97 | -> | Plus |
chrX | 5224231..5224559 | 1589..1917 | 98 | -> | Plus |
chrX | 5224618..5224986 | 1918..2284 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 1..1845 | 192..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 1..1845 | 192..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 1..1845 | 192..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 1..1845 | 192..2036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 1..2280 | 1..2280 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 1..2284 | 1..2284 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 36..2319 | 1..2284 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XRCC1-RA | 36..2319 | 1..2284 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5329911..5330152 | 1..242 | 100 | -> | Plus |
X | 5330214..5331470 | 243..1499 | 100 | -> | Plus |
X | 5331531..5331619 | 1500..1588 | 100 | -> | Plus |
X | 5331682..5332010 | 1589..1917 | 100 | -> | Plus |
X | 5332069..5332435 | 1918..2284 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5329911..5330152 | 1..242 | 100 | -> | Plus |
X | 5330214..5331470 | 243..1499 | 100 | -> | Plus |
X | 5331531..5331619 | 1500..1588 | 100 | -> | Plus |
X | 5331682..5332010 | 1589..1917 | 100 | -> | Plus |
X | 5332069..5332435 | 1918..2284 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5329911..5330152 | 1..242 | 100 | -> | Plus |
X | 5330214..5331470 | 243..1499 | 100 | -> | Plus |
X | 5331531..5331619 | 1500..1588 | 100 | -> | Plus |
X | 5331682..5332010 | 1589..1917 | 100 | -> | Plus |
X | 5332069..5332435 | 1918..2284 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5223944..5224185 | 1..242 | 100 | -> | Plus |
arm_X | 5224247..5225503 | 243..1499 | 100 | -> | Plus |
arm_X | 5225564..5225652 | 1500..1588 | 100 | -> | Plus |
arm_X | 5225715..5226043 | 1589..1917 | 100 | -> | Plus |
arm_X | 5226102..5226468 | 1918..2284 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5338009..5338250 | 1..242 | 100 | -> | Plus |
X | 5338312..5339568 | 243..1499 | 100 | -> | Plus |
X | 5339629..5339717 | 1500..1588 | 100 | -> | Plus |
X | 5339780..5340108 | 1589..1917 | 100 | -> | Plus |
X | 5340167..5340533 | 1918..2284 | 100 | Plus |
Translation from 191 to 2035
> FI04011.pep MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFE EPQQITGIDIGNEHAAFIEVLVSRTGCQADDFRELLLSSSFMTPIESKNS SNPNRVRCFSSTSLAESALPEKWKLLQIVCTQPFNRHVPYGLSFVKVHVV AAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQHKS PAISATSTAAAIRDAGSTALRRLSAGKVSSLAASPKTSTSPSPVLNALRS VSPTPLDAKPLDRNRASLLFGDDDEDVKDAEVNAKKQRLSKHLEADKDRR RLEQEKERESRKKKSSRHSLDKSISKEDKPPAKEHNSSSREKSTAKEEKE QLRKEERSHSKEEKSRRKEKSKHDHRSSDTSNSKESSRPTAQKRHSSPTA VAVTPAKKQKIVDTAIQYRPLNQLLKGVVLVISGIQNPDRADLRSKAVAL GAKYKADWGSGCTHLICAFKNTPKYNQVKGKGKIVTRSWIEKCYELKKYL PWRRYALDTNDIGQPESDEELCDEATRPRRDSSKDDVAMLEDSKLTALAD QNDVEMNPDALSGIDTEDELQRVAEENKTKKAKLRTTVKTKSQDIYEVST DEEDYLELKKKQID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21338-PA | 627 | GF21338-PA | 1..623 | 1..613 | 1983 | 65.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18754-PA | 626 | GG18754-PA | 1..622 | 1..613 | 2606 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24614-PA | 550 | GH24614-PA | 1..251 | 1..242 | 757 | 63.4 | Plus |
Dgri\GH24614-PA | 550 | GH24614-PA | 231..542 | 311..606 | 691 | 50.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
XRCC1-PA | 614 | CG4208-PA | 1..614 | 1..614 | 3124 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11076-PA | 570 | GI11076-PA | 1..570 | 1..613 | 1603 | 56.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14681-PA | 615 | GL14681-PA | 1..613 | 1..614 | 1827 | 62.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18032-PA | 615 | GA18032-PA | 1..613 | 1..614 | 1809 | 61.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12402-PA | 621 | GM12402-PA | 1..620 | 1..613 | 2738 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16724-PA | 641 | GD16724-PA | 1..640 | 1..613 | 2699 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14778-PA | 608 | GJ14778-PA | 1..608 | 1..613 | 1562 | 56.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18507-PA | 597 | GK18507-PA | 383..591 | 404..613 | 753 | 68.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16396-PA | 632 | GE16396-PA | 1..628 | 1..613 | 2443 | 82.4 | Plus |
Translation from 191 to 2035
> FI04011.hyp MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFE EPQQITGIDIGNEHAAFIEVLVSRTGCQADDFRELLLSSSFMTPIESKNS SNPNRVRCFSSTSLAESALPEKWKLLQIVCTQPFNRHVPYGLSFVKVHVV AAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQHKS PAISATSTAAAIRDAGSTALRRLSAGKVSSLAASPKTSTSPSPVLNALRS VSPTPLDAKPLDRNRASLLFGDDDEDVKDAEVNAKKQRLSKHLEADKDRR RLEQEKERESRKKKSSRHSLDKSISKEDKPPAKEHNSSSREKSTAKEEKE QLRKEERSHSKEEKSRRKEKSKHDHRSSDTSNSKESSRPTAQKRHSSPTA VAVTPAKKQKIVDTAIQYRPLNQLLKGVVLVISGIQNPDRADLRSKAVAL GAKYKADWGSGCTHLICAFKNTPKYNQVKGKGKIVTRSWIEKCYELKKYL PWRRYALDTNDIGQPESDEELCDEATRPRRDSSKDDVAMLEDSKLTALAD QNDVEMNPDALSGIDTEDELQRVAEENKTKKAKLRTTVKTKSQDIYEVST DEEDYLELKKKQID*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
XRCC1-PA | 614 | CG4208-PA | 1..614 | 1..614 | 3124 | 100 | Plus |