Clone FI04011 Report

Search the DGRC for FI04011

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:40
Well:11
Vector:pBS SK-
Associated Gene/TranscriptXRCC1-RA
Protein status:FI04011.pep: gold
Sequenced Size:2323

Clone Sequence Records

FI04011.complete Sequence

2323 bp assembled on 2008-12-22

GenBank Submission: BT056252.1

> FI04011.complete
CAAAATCAGCATAATTCACCGCCCATCATCAAAAGATAAAAGAAATAAAC
AAACATTCTAGCGCACATGGCAACACATGCAACCGACGCAATTCCCTTTC
GACAATCAGTTTAATCGCAGGCGCAACTGTCGGCAAAGCAATTTGCCGCA
AAATCATCGGCGTCTCAGTGTAAATTCATGCGACTTGCGAAATGCCAATT
GCGCTTTTCAAGTCCGTACGCGAAGTGAGCAGCGAAGATGCGGTGCACGT
AGCGGCGAATCTGCTCAAGGAAAACGCCGGCAAGAAGTGGCGAACCAAGG
CGCCGGGAGAGAAATCCGCATACGTTGTGCTGGAGTTCGAGGAGCCGCAA
CAGATTACGGGCATCGATATTGGCAACGAACATGCCGCCTTCATCGAGGT
GCTGGTCAGTCGAACAGGCTGCCAGGCGGACGATTTCCGCGAGCTGCTGC
TATCCAGTTCGTTTATGACGCCCATCGAGAGCAAGAATTCCAGCAATCCA
AATCGCGTTCGCTGTTTCAGTAGCACTTCGCTGGCGGAGAGTGCACTGCC
GGAGAAGTGGAAGCTGCTTCAGATAGTCTGCACACAGCCCTTCAATCGTC
ATGTGCCATACGGGCTCTCATTCGTCAAGGTGCATGTAGTGGCTGCTGCG
GCGCCTAAGGTCAAATCCCTAGTGCCGCAGGGTGTTATGCAATTCGGGAC
CTTTAAGCTGCGCGAGGAGTCGCCGGACTCGGAAACGGACAATCAAGTGA
ACAGATTTCACAGCTGGAAGAAGCAGACGCAGCACAAGTCGCCCGCGATC
AGTGCGACCTCCACAGCAGCGGCCATTCGGGACGCCGGCTCCACGGCCCT
GCGAAGGCTGAGCGCTGGCAAGGTTTCTAGCCTGGCTGCATCGCCCAAAA
CCTCGACGTCGCCATCACCAGTTCTCAATGCTCTGCGATCGGTTTCTCCG
ACGCCATTGGATGCCAAGCCCCTGGATCGCAATCGAGCTTCACTCTTGTT
CGGCGACGATGATGAGGACGTGAAGGACGCTGAGGTCAATGCAAAGAAAC
AACGGCTGAGCAAGCATCTGGAGGCGGACAAGGATCGACGGCGATTGGAG
CAGGAAAAGGAGAGGGAGAGCAGAAAGAAAAAGTCAAGCAGGCACTCCTT
GGATAAGTCAATCAGCAAAGAAGACAAACCACCGGCAAAGGAGCACAATT
CGTCCTCCAGAGAAAAATCCACAGCCAAAGAAGAGAAAGAGCAATTACGA
AAAGAGGAAAGATCGCATTCGAAGGAGGAGAAGTCCAGGAGGAAGGAGAA
ATCTAAGCATGATCACAGATCTTCGGACACCTCGAATTCCAAGGAAAGTT
CGCGCCCAACTGCGCAAAAGCGACATTCATCTCCCACCGCAGTCGCAGTA
ACGCCCGCCAAAAAGCAAAAGATCGTGGACACAGCGATTCAATACCGTCC
CCTTAATCAGTTACTCAAGGGTGTGGTCCTGGTCATCAGTGGCATACAGA
ATCCCGATCGTGCAGACTTGCGTTCGAAAGCGGTCGCCTTGGGAGCCAAG
TATAAGGCTGATTGGGGATCAGGATGTACCCATCTGATATGCGCATTCAA
AAACACACCGAAATACAATCAAGTGAAGGGCAAGGGCAAGATTGTGACAC
GCAGTTGGATCGAGAAATGTTATGAGCTGAAGAAGTACCTGCCATGGCGA
CGTTACGCCCTGGATACCAATGACATTGGCCAGCCGGAGAGCGATGAGGA
GCTTTGCGATGAGGCGACGAGGCCACGGCGCGATTCCAGCAAGGATGATG
TGGCAATGCTAGAGGATAGCAAGCTAACAGCTCTAGCGGATCAGAATGAT
GTGGAAATGAATCCAGATGCCTTATCGGGCATTGATACGGAAGATGAACT
GCAGCGCGTGGCTGAGGAAAACAAAACGAAGAAAGCCAAACTAAGGACTA
CAGTAAAGACGAAATCGCAAGATATATACGAAGTTAGTACCGATGAAGAG
GATTATCTGGAGCTAAAGAAGAAACAAATCGATTAGGTGCCATTTCTAAC
CTCATCTCATATTTTGTATACGACTTTATTACTTAAATTGCTTGTAATGT
GCAAGTATCATATTTTTGTACTTTGTTAATCGAATATGCTCGTTATCAAA
AATTCGACAAATTCAAAATAAGTGATTAGTTTGGACCATTTTGAAAAAAG
AGCCCAAGGAATAAATATTGATATTATAATAGATCTATCGCATGTTCATT
TAAAAAAAACTATCAAATAAACCACCTCTGGGCTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA

FI04011.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
XRCC1-RA 2348 XRCC1-RA 65..2348 1..2284 11420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5222762..5224019 242..1499 6260 99.8 Plus
chrX 22417052 chrX 5224617..5224986 1917..2284 1770 99.2 Plus
chrX 22417052 chrX 5224231..5224559 1589..1917 1555 98.2 Plus
chrX 22417052 chrX 5222457..5222704 1..245 1160 98.8 Plus
chrX 22417052 chrX 5224077..5224168 1497..1588 430 97.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:11:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5330213..5331470 242..1499 6290 100 Plus
X 23542271 X 5332068..5332437 1917..2286 1850 100 Plus
X 23542271 X 5331682..5332010 1589..1917 1645 100 Plus
X 23542271 X 5329911..5330155 1..245 1225 100 Plus
X 23542271 X 5331528..5331619 1497..1588 460 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5338311..5339568 242..1499 6290 100 Plus
X 23527363 X 5340166..5340535 1917..2286 1850 100 Plus
X 23527363 X 5339780..5340108 1589..1917 1645 100 Plus
X 23527363 X 5338009..5338253 1..245 1225 100 Plus
X 23527363 X 5339626..5339717 1497..1588 460 100 Plus
Blast to na_te.dros performed 2019-03-16 21:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 3330..3445 2159..2276 133 63.6 Plus

FI04011.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:45:39 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5222457..5222701 1..242 98 -> Plus
chrX 5222763..5224019 243..1499 99 -> Plus
chrX 5224080..5224168 1500..1588 97 -> Plus
chrX 5224231..5224559 1589..1917 98 -> Plus
chrX 5224618..5224986 1918..2284 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:04:21 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 1..1845 192..2036 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:26:48 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 1..1845 192..2036 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:02:17 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 1..1845 192..2036 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:08 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 1..1845 192..2036 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-22 12:02:29 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 1..2280 1..2280 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:26:47 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 1..2284 1..2284 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:02:17 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 36..2319 1..2284 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:08 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
XRCC1-RA 36..2319 1..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:39 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
X 5329911..5330152 1..242 100 -> Plus
X 5330214..5331470 243..1499 100 -> Plus
X 5331531..5331619 1500..1588 100 -> Plus
X 5331682..5332010 1589..1917 100 -> Plus
X 5332069..5332435 1918..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:39 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
X 5329911..5330152 1..242 100 -> Plus
X 5330214..5331470 243..1499 100 -> Plus
X 5331531..5331619 1500..1588 100 -> Plus
X 5331682..5332010 1589..1917 100 -> Plus
X 5332069..5332435 1918..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:45:39 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
X 5329911..5330152 1..242 100 -> Plus
X 5330214..5331470 243..1499 100 -> Plus
X 5331531..5331619 1500..1588 100 -> Plus
X 5331682..5332010 1589..1917 100 -> Plus
X 5332069..5332435 1918..2284 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:02:17 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5223944..5224185 1..242 100 -> Plus
arm_X 5224247..5225503 243..1499 100 -> Plus
arm_X 5225564..5225652 1500..1588 100 -> Plus
arm_X 5225715..5226043 1589..1917 100 -> Plus
arm_X 5226102..5226468 1918..2284 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:59:18 Download gff for FI04011.complete
Subject Subject Range Query Range Percent Splice Strand
X 5338009..5338250 1..242 100 -> Plus
X 5338312..5339568 243..1499 100 -> Plus
X 5339629..5339717 1500..1588 100 -> Plus
X 5339780..5340108 1589..1917 100 -> Plus
X 5340167..5340533 1918..2284 100   Plus

FI04011.pep Sequence

Translation from 191 to 2035

> FI04011.pep
MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFE
EPQQITGIDIGNEHAAFIEVLVSRTGCQADDFRELLLSSSFMTPIESKNS
SNPNRVRCFSSTSLAESALPEKWKLLQIVCTQPFNRHVPYGLSFVKVHVV
AAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQHKS
PAISATSTAAAIRDAGSTALRRLSAGKVSSLAASPKTSTSPSPVLNALRS
VSPTPLDAKPLDRNRASLLFGDDDEDVKDAEVNAKKQRLSKHLEADKDRR
RLEQEKERESRKKKSSRHSLDKSISKEDKPPAKEHNSSSREKSTAKEEKE
QLRKEERSHSKEEKSRRKEKSKHDHRSSDTSNSKESSRPTAQKRHSSPTA
VAVTPAKKQKIVDTAIQYRPLNQLLKGVVLVISGIQNPDRADLRSKAVAL
GAKYKADWGSGCTHLICAFKNTPKYNQVKGKGKIVTRSWIEKCYELKKYL
PWRRYALDTNDIGQPESDEELCDEATRPRRDSSKDDVAMLEDSKLTALAD
QNDVEMNPDALSGIDTEDELQRVAEENKTKKAKLRTTVKTKSQDIYEVST
DEEDYLELKKKQID*

FI04011.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21338-PA 627 GF21338-PA 1..623 1..613 1983 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18754-PA 626 GG18754-PA 1..622 1..613 2606 86.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24614-PA 550 GH24614-PA 1..251 1..242 757 63.4 Plus
Dgri\GH24614-PA 550 GH24614-PA 231..542 311..606 691 50.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
XRCC1-PA 614 CG4208-PA 1..614 1..614 3124 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11076-PA 570 GI11076-PA 1..570 1..613 1603 56.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14681-PA 615 GL14681-PA 1..613 1..614 1827 62.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18032-PA 615 GA18032-PA 1..613 1..614 1809 61.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12402-PA 621 GM12402-PA 1..620 1..613 2738 90.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16724-PA 641 GD16724-PA 1..640 1..613 2699 87.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14778-PA 608 GJ14778-PA 1..608 1..613 1562 56.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18507-PA 597 GK18507-PA 383..591 404..613 753 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16396-PA 632 GE16396-PA 1..628 1..613 2443 82.4 Plus

FI04011.hyp Sequence

Translation from 191 to 2035

> FI04011.hyp
MPIALFKSVREVSSEDAVHVAANLLKENAGKKWRTKAPGEKSAYVVLEFE
EPQQITGIDIGNEHAAFIEVLVSRTGCQADDFRELLLSSSFMTPIESKNS
SNPNRVRCFSSTSLAESALPEKWKLLQIVCTQPFNRHVPYGLSFVKVHVV
AAAAPKVKSLVPQGVMQFGTFKLREESPDSETDNQVNRFHSWKKQTQHKS
PAISATSTAAAIRDAGSTALRRLSAGKVSSLAASPKTSTSPSPVLNALRS
VSPTPLDAKPLDRNRASLLFGDDDEDVKDAEVNAKKQRLSKHLEADKDRR
RLEQEKERESRKKKSSRHSLDKSISKEDKPPAKEHNSSSREKSTAKEEKE
QLRKEERSHSKEEKSRRKEKSKHDHRSSDTSNSKESSRPTAQKRHSSPTA
VAVTPAKKQKIVDTAIQYRPLNQLLKGVVLVISGIQNPDRADLRSKAVAL
GAKYKADWGSGCTHLICAFKNTPKYNQVKGKGKIVTRSWIEKCYELKKYL
PWRRYALDTNDIGQPESDEELCDEATRPRRDSSKDDVAMLEDSKLTALAD
QNDVEMNPDALSGIDTEDELQRVAEENKTKKAKLRTTVKTKSQDIYEVST
DEEDYLELKKKQID*

FI04011.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
XRCC1-PA 614 CG4208-PA 1..614 1..614 3124 100 Plus