Clone FI04036 Report

Search the DGRC for FI04036

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:40
Well:36
Vector:pBS SK-
Associated Gene/TranscriptCG9940-RA
Protein status:FI04036.pep: gold
Sequenced Size:3805

Clone Sequence Records

FI04036.complete Sequence

3805 bp assembled on 2009-06-22

GenBank Submission: BT088846.1

> FI04036.complete
CCGATTTTTGAACTGACAATAAAACTAAGCGAAACAGCAACAACAAGGAA
CCAAAACCACATACCAAAAAAAAAACAAAGATAACAACCAACCAATCACG
GGATTTGAACGTAGTGAAAGATACATCAACACAGGAAACACAGAAAAACA
AAGAAAAAATGGGACGCAAGGTGACCGTAGCGGTGTCCACATTGAATCAA
TGGGCATTGGACTTTGAGGGTAACATGGTGAGGATACTGCAGTCCATTCT
GGAGGCCAAGGACATGGGCGCCAGCTATCGCACGGGACCGGAGCTGGAAG
TTTGTGGCTACAGCTGCGAGGACCACTTTCGTGAGCCGGACACATTCCTG
CACTCGTGGGAAGTGCTGCTGGAGGTGATGATGTCGCCCATGTGTGAAAA
TATGCTGGTGGACGTGGGCATGCCGGTGATGCATCGCAATGTGGCCTACA
ATTGTCGGGTGGCGTTCTTTAATCGCCAGATTCTGCTCATCCGGCCCAAG
ATGGCCATGTGCGACGATGGCAATTATAGGGAGTCGCGATGGTTTACCGC
CTGGACGAAAGCCCTACAAACGGAGGAGTATGTGCTGCCGCGAATGATTG
CCCAGCATACGGGTCAGCAGACGGTTCCCTTTGGCGATGCAGTGATAGCC
ACGAGGGATACCTGTTTGGGCTACGAGATCTGCGAAGAGCTGTGGAATGT
GCGCAGCAAGCACATCGAGATGTCGTTGGCCGGTGTGGAGCTGATAGTGA
ACAGCTCCGGCAGCTATATGGAATTGCGAAAGGCGCATATCACCAGCGAT
CTCATTCGGAATGCCAGCTTCAAGGCCGGCGGAGCCTATCTCTTTAGCAA
TCTTCGAGGTTGCGATGGTCAGCGAGTGTACTTCAATGGTTGCTCGGCCA
TAGCCTTGAATGGTGAGATCCTGGCGCGCAGTCAGCAGTTCGCACTGCAG
GATGTGGAGGTCACGCTGGCCACCATCGATCTGGAGGAGATACGTGCCTA
TCGTGTTAGCCTGAGATCACGCTGCACGGCTGCTGCATCGGCAGCGGAGT
ATCCAAGGATCCATTGTGACTTTGAGATGTCCACGCACAGTGACATATTC
AAGACGTCGACGCCTCCTCTGAATTGGCCAATGCACACGCCTGAGGAGGA
GATTGCCCTGGGACCGGCCTGTTGGCTATGGGATTATCTGAGGAGATCCG
GTCAAGGGGGATTTTTCCTGCCCCTAAGCGGTGGTGTCGATTCGAGTAGC
TCGGCCACAATAGTGCACTCCATGTGCCGGCAAATCGTGCAGGCTGTCCA
GCAAGGCGACGCCCAGGTGCTTCACGATATCCGACAGCTTCTGGCCGACT
CGGACTATACACCGGATAATGCCGCCGGATTGTGCAATCGATTGCTGGTC
ACCTGCTATATGGGCAGTGTTAATAGCAGCAAGGAAACCCGTCGACGGGC
AGCCCAATTGGCCAATCAACTGGGCAGTTACCACATCGAGATTAGCATTG
ATTCGGCGGTGAATGCACTATTGAGCATATTCAATGCCGTCACTGGTTTA
ACGCCACGTTTCCGTACCCAGGGTGGATGTGCTCGACAGAATCTGGCATT
GCAGAATATGCAATCGAGGATACGCATGGTCCTGGCCTACATCTTTGCCC
AGTTGACGTTGTGGGTAAGAAACAGGCCCGGTGGCTTGCTCGTCCTGGGC
TCGGCCAATGTGGATGAATCGCTGCGCGGTTATCTCACCAAATATGACTG
CTCCTCGGCGGACATTAATCCTATTGGTGGGATCTCCAAAATGGATCTAC
GCAGGTTTCTGACCTATGCCAAGGATAAATTCAACCTGCCCGTGTTGGAG
TCCATTATCGATGCCCCGCCCACCGCCGAGCTGGAACCGCTGCAGGAGAA
CGGGGAGCTGCAGCAGACGGACGAGGCGGACATGGGAATGACCTATGCGG
AGCTCTCCCAGTTCGGTCGCCTGCGCAAACAGTCATTTTGCGGACCCTAC
AGCATGTTTTGCCACCTTGTTGCCACCTGGAAGAGCGACCTTAGTCCCAA
GGAGGTGGCCGAAAAGGTGAAGCACTTCTTCCTTTGCTACGCCATTAATC
GGCACAAGATGACCGTACTGACGCCGTCAGTGCACGCGGAGAGCTACAGT
CCCGATGATAATCGGTTCGATCATCGCCCCTTCTTGTATCGACCCAACTG
GAGCTGGCAGTTCAAGGCCATTGACGACGAGGCGGAGAAACTGCAACCGA
TCTACACACCATCTTCGGCTCAATTGCGCCCCAGCAGCGAGGACCTGTTG
ATCTCCACACAGAGATCCTCCCACCTGGACGACTCCAAGCATTCGTCTCC
GTTGTCCTCGGCCTCGGCGTCCGCATCGATTGACGTGGGCATTTCAACGG
CAGCGGTTCCGTTGCCCGGTGCAGCTGCCCCAGGCGGTCTCTCCAAGAAG
CCCAGTGGTTACTCAAAGGTGCACGTCAATGTGCTTGGCAAGATCAAGGA
TCGCACCGGTATTCCCGTCTAGGAACGCGATACTCGCAACGCACTGGATT
TATATATATTATATACAGCATTTTTTTTTAGCACAGCTTAATGACCTTTT
GCTGCCACTTGAAATTTGTTGCAATTAGGTATCGGCTATCTTTTGCAACT
ATGTGCCTTCTATTGCTCGTAAAAGTGTTTCCTTAAAAATATCAGTCCTG
TTCTAGTTACATATATGGTCATTAAATAAATTTACCTACAAAGAAAATCC
TAAACTTAATTAGTATGTGCTTATCCGTTTAATTGTTGATAGTTTTATAC
AAACCTTTGTAATTTACATGATATTTCTGTTTAATCTGTTTAAAATGCAA
TCTATAACTGCTATTAAGACTACTATTACAAATTTGTCATATCTAGCAAT
TGGGAGTATGAATAGTAGCTTTACTATGCGGCAGCAAAAGGCATTATCCT
GTACGTATACAGAATTGGAATGAATACATATGCGTAGGCCTAGGCGTAGA
GATTCATATTTTGTTCAGATCCTTTTCTAGGTAGTCAGCCTTTGTAGAGT
CCTTTGCAGTTTGCCTTATCTAAAAGTGATTAATCTTGTCTAATGCTCAA
GCTAAACTAACTGGACAAACAGTTCGTCCGCCTGTCCAAACAATTTGTAC
AACAATCTTATTAAAGTATCAATTAGGCGATCCTTCATCCACACATATAA
TCGTATAAATCATCTGAATTTACATATTAAAGATATTACTTGTTGTGTTA
TTGGTTGTGTACGGTGCGGCTTAAACTGACATTAATAAACTGATTGTTTT
ACCTGATTTTTTAAGACATCAAATTATTTATAATGATCAAATATATACAC
ACCGTATTTAAAAATTATCAATTATATGTAACCCAATTGGGGGAAAAAAT
ACTTTAATGTTTTAATGTTCCAAAAGTTGCACTTTTAAAAACGCACTGTA
TGTTTATTAATAAGATGAATTTGTTGATCATAAGACAATTTCTCAATCCT
AATGCAAACCATATTATACAAAACCAATTAGGAAGGTCAATTATACACAT
ATGTTGTGGGCAATTTAAGCCCGAGAAAAACATTACAACTATTCGCTTAA
AATTTCCTATAAGCATCTAAACCATTTGAAAAAAAATTCTAGCAAAAACT
TACTATAGCTAAACTTTTGTTGATTTAACATATTGCACCCATAAGAGCAA
TTCAAATTGTATTTCCTTTCTGAATTGTAAATTATATTTTATGTATGAAC
GTAAGACCAATGTAGCTAATGCTAATTCAAAAAAAAAAAAAAAAAAAAAA
AAAAA

FI04036.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9940-RB 4242 CG9940-RB 423..4200 1..3778 18890 100 Plus
CG9940-RA 4378 CG9940-RA 551..4328 1..3778 18890 100 Plus
CG9940.a 4101 CG9940.a 324..4101 1..3778 18890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13575282..13577231 3778..1829 9750 100 Minus
chrX 22417052 chrX 13577298..13578732 1828..394 7175 100 Minus
chrX 22417052 chrX 13578987..13579290 304..1 1520 100 Minus
chrX 22417052 chrX 13578801..13578891 394..304 455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:12:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13684553..13686502 3778..1829 9750 100 Minus
X 23542271 X 13686569..13688003 1828..394 7175 100 Minus
X 23542271 X 13688258..13688561 304..1 1520 100 Minus
X 23542271 X 13688072..13688162 394..304 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13692651..13694600 3778..1829 9750 100 Minus
X 23527363 X 13694667..13696101 1828..394 7175 100 Minus
X 23527363 X 13696356..13696659 304..1 1520 100 Minus
X 23527363 X 13696170..13696260 394..304 455 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:07:52 has no hits.

FI04036.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:08:41 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13575282..13577231 1829..3778 100 <- Minus
chrX 13577298..13578731 395..1828 100 <- Minus
chrX 13578801..13578890 305..394 100 <- Minus
chrX 13578987..13579290 1..304 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:50 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RA 1..2364 159..2522 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:48:30 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RA 1..2364 159..2522 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:04:02 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RB 1..2364 159..2522 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:18 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RB 1..2364 159..2522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-22 09:53:18 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RA 542..4319 1..3778 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:48:30 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RA 542..4319 1..3778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:04:02 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RB 425..4202 1..3778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:18 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
CG9940-RB 425..4202 1..3778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:08:41 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
X 13684553..13686502 1829..3778 100 <- Minus
X 13686569..13688002 395..1828 100 <- Minus
X 13688072..13688161 305..394 100 <- Minus
X 13688258..13688561 1..304 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:08:41 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
X 13684553..13686502 1829..3778 100 <- Minus
X 13686569..13688002 395..1828 100 <- Minus
X 13688072..13688161 305..394 100 <- Minus
X 13688258..13688561 1..304 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:08:41 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
X 13684553..13686502 1829..3778 100 <- Minus
X 13686569..13688002 395..1828 100 <- Minus
X 13688072..13688161 305..394 100 <- Minus
X 13688258..13688561 1..304 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:04:02 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13578586..13580535 1829..3778 100 <- Minus
arm_X 13580602..13582035 395..1828 100 <- Minus
arm_X 13582105..13582194 305..394 100 <- Minus
arm_X 13582291..13582594 1..304 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:24:07 Download gff for FI04036.complete
Subject Subject Range Query Range Percent Splice Strand
X 13692651..13694600 1829..3778 100 <- Minus
X 13694667..13696100 395..1828 100 <- Minus
X 13696170..13696259 305..394 100 <- Minus
X 13696356..13696659 1..304 100   Minus

FI04036.pep Sequence

Translation from 158 to 2521

> FI04036.pep
MGRKVTVAVSTLNQWALDFEGNMVRILQSILEAKDMGASYRTGPELEVCG
YSCEDHFREPDTFLHSWEVLLEVMMSPMCENMLVDVGMPVMHRNVAYNCR
VAFFNRQILLIRPKMAMCDDGNYRESRWFTAWTKALQTEEYVLPRMIAQH
TGQQTVPFGDAVIATRDTCLGYEICEELWNVRSKHIEMSLAGVELIVNSS
GSYMELRKAHITSDLIRNASFKAGGAYLFSNLRGCDGQRVYFNGCSAIAL
NGEILARSQQFALQDVEVTLATIDLEEIRAYRVSLRSRCTAAASAAEYPR
IHCDFEMSTHSDIFKTSTPPLNWPMHTPEEEIALGPACWLWDYLRRSGQG
GFFLPLSGGVDSSSSATIVHSMCRQIVQAVQQGDAQVLHDIRQLLADSDY
TPDNAAGLCNRLLVTCYMGSVNSSKETRRRAAQLANQLGSYHIEISIDSA
VNALLSIFNAVTGLTPRFRTQGGCARQNLALQNMQSRIRMVLAYIFAQLT
LWVRNRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKMDLRRF
LTYAKDKFNLPVLESIIDAPPTAELEPLQENGELQQTDEADMGMTYAELS
QFGRLRKQSFCGPYSMFCHLVATWKSDLSPKEVAEKVKHFFLCYAINRHK
MTVLTPSVHAESYSPDDNRFDHRPFLYRPNWSWQFKAIDDEAEKLQPIYT
PSSAQLRPSSEDLLISTQRSSHLDDSKHSSPLSSASASASIDVGISTAAV
PLPGAAAPGGLSKKPSGYSKVHVNVLGKIKDRTGIPV*

FI04036.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22350-PA 785 GF22350-PA 1..785 1..787 4009 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19493-PA 787 GG19493-PA 1..787 1..787 4140 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11939-PA 785 GH11939-PA 1..785 1..787 3787 87.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
Nadsyn-PC 787 CG9940-PC 1..787 1..787 4117 100 Plus
Nadsyn-PA 787 CG9940-PA 1..787 1..787 4117 100 Plus
Nadsyn-PB 787 CG9940-PB 1..787 1..787 4117 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14143-PA 783 GI14143-PA 1..783 1..787 3612 83.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19852-PA 789 GL19852-PA 1..789 1..787 3847 91.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22140-PA 789 GA22140-PA 1..789 1..787 3847 91.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17596-PA 787 GM17596-PA 1..787 1..787 4216 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15878-PA 1059 GD15878-PA 1..593 1..593 3164 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19077-PA 782 GJ19077-PA 1..782 1..787 3685 86.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25126-PA 784 GK25126-PA 1..784 1..787 3828 90.6 Plus
Dwil\GK20203-PA 423 GK20203-PA 1..234 1..288 1093 72.6 Plus
Dwil\GK20203-PA 423 GK20203-PA 227..423 480..676 990 92.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16145-PA 787 GE16145-PA 1..787 1..787 4189 98.1 Plus

FI04036.hyp Sequence

Translation from 158 to 2521

> FI04036.hyp
MGRKVTVAVSTLNQWALDFEGNMVRILQSILEAKDMGASYRTGPELEVCG
YSCEDHFREPDTFLHSWEVLLEVMMSPMCENMLVDVGMPVMHRNVAYNCR
VAFFNRQILLIRPKMAMCDDGNYRESRWFTAWTKALQTEEYVLPRMIAQH
TGQQTVPFGDAVIATRDTCLGYEICEELWNVRSKHIEMSLAGVELIVNSS
GSYMELRKAHITSDLIRNASFKAGGAYLFSNLRGCDGQRVYFNGCSAIAL
NGEILARSQQFALQDVEVTLATIDLEEIRAYRVSLRSRCTAAASAAEYPR
IHCDFEMSTHSDIFKTSTPPLNWPMHTPEEEIALGPACWLWDYLRRSGQG
GFFLPLSGGVDSSSSATIVHSMCRQIVQAVQQGDAQVLHDIRQLLADSDY
TPDNAAGLCNRLLVTCYMGSVNSSKETRRRAAQLANQLGSYHIEISIDSA
VNALLSIFNAVTGLTPRFRTQGGCARQNLALQNMQSRIRMVLAYIFAQLT
LWVRNRPGGLLVLGSANVDESLRGYLTKYDCSSADINPIGGISKMDLRRF
LTYAKDKFNLPVLESIIDAPPTAELEPLQENGELQQTDEADMGMTYAELS
QFGRLRKQSFCGPYSMFCHLVATWKSDLSPKEVAEKVKHFFLCYAINRHK
MTVLTPSVHAESYSPDDNRFDHRPFLYRPNWSWQFKAIDDEAEKLQPIYT
PSSAQLRPSSEDLLISTQRSSHLDDSKHSSPLSSASASASIDVGISTAAV
PLPGAAAPGGLSKKPSGYSKVHVNVLGKIKDRTGIPV*

FI04036.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9940-PC 787 CG9940-PC 1..787 1..787 4117 100 Plus
CG9940-PA 787 CG9940-PA 1..787 1..787 4117 100 Plus
CG9940-PB 787 CG9940-PB 1..787 1..787 4117 100 Plus