Clone FI04117 Report

Search the DGRC for FI04117

Clone and Library Details

Library:FI
Tissue Source:various Drosophila melanogaster
Created by: 
Date Registered:2005-11-08
Comments:Drosophila melanogaster corrected cDNA clones
Original Plate Number:41
Well:17
Vector:pBS SK-
Associated Gene/Transcriptvls-RA
Protein status:FI04117.pep: gold
Sequenced Size:1250

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
vls 2008-12-18 5.12 accounting

Clone Sequence Records

FI04117.complete Sequence

1250 bp assembled on 2008-09-12

GenBank Submission: BT044184.1

> FI04117.complete
ACGATGTTCCCGCAACGCAGCTCGGAGCTGTACCGCACTCCGGTGACCCA
CCAGCCTCCGCCGGCACTGGAGCTGGCCGGGAATCTGGAGTACCCGAACC
TCAACATTGCGGACCTAAACGCGCGATTGGAAAACCTTTCGCCGCGACTG
CACGACTGCTGGGACAGCATCGCTATCAATGATCACAACCACCTGGCCCT
GGCCACAAACCGACGCGAAGGACGCCAATGGTGGGGCATGTTGTTCGGCT
ACGGACGCGACCAGATGCACCACATGAGCGTGGACTCGGCGAACTTCAAG
CTGCAGGCGGAGCACACGGTGAACATTGTGCGCTACGCTGAGGATGATTT
CCTACTGGTGGCCCTTGGGGATACCCGACTCCAGGCCTGGTCCACATACT
CCAAGGTGCGAGATTCTCAGTCGCCATACTGCCTCTTCCTCGTGGGCGAG
TCCAGTGCGCATCCCACACCCATCAGCCAACTGAGCGTCTTCAAGGCGGA
TCCCCGCACTGCCGTTTCGGGCTCAGCGGACAGTACCCTCAATGTCTGGG
ATCTCTCGGGCGCCGATATGGTGAGCACCTACAGATCGCGCTCCTCGCAT
ACCGACAAGTTGACTGGCCTGGCCACACCCGCAGCTTCAGTCGATAAATT
TGTGACCTGTGATCGTGGCGGCTGTGCCCGCCTTTGGGATGTCCGGGCAG
CGGCTCCATCTTCCACGTGCCTCTATGCGGATGCCAGCCACGTGCTGAGC
TTCACCAGTGCCGCCTGGGCAGCTGCCTCGGAGCTGCAGGGTGACAATCA
CATCTATCTCGGGGACTACGACGGCAAAGTTCATACTCTGGACATTCGAG
TGCCACGAAAACTGGCGGAAACCAGGGAATACTTCGACAAGGGCCATGTC
GCCCAGTTATTAATCAATGGGCCCCATCTGGCTGCGATGAGCAATTTGCC
CGCCTCCGTGAAAGTGGCCAATGTGCAGGCGGGCCATGAGTTCATCTACA
CGCACCAGGACACCCATTCTCGCCTAACTGATGCCGTTTGGACCGATGAT
AGCACCCTCATCACCATTGGACATGGCCGCAAAATGGTGACGCACGCGAT
CAAATAATTTTGCTGGCGAACAAATTCAATTGCTTTATTTCAAAAAGCGG
AATGGTTTGCTGAATAGTCATTCTTACATTTAACACTTATAGTTACTGAA
CAGTTACAAGTAATAAATCGTAATAATAGTCCAAAAAAAAAAAAAAAAAA

FI04117.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
vls-RA 1421 vls-RA 166..1399 1..1234 6095 99.5 Plus
lok-RB 2209 lok-RB 2078..2209 1234..1103 630 98.4 Minus
lok-RC 2210 lok-RC 2079..2210 1234..1103 630 98.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20063415..20063959 545..1 2710 99.8 Minus
chr2L 23010047 chr2L 20062982..20063359 921..544 1875 99.7 Minus
chr2L 23010047 chr2L 20062619..20062931 1232..920 1520 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 16:12:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20065057..20065601 545..1 2710 99.8 Minus
2L 23513712 2L 20064624..20065001 921..544 1875 99.7 Minus
2L 23513712 2L 20064259..20064573 1234..920 1530 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20065057..20065601 545..1 2710 99.8 Minus
2L 23513712 2L 20064624..20065001 921..544 1875 99.7 Minus
2L 23513712 2L 20064259..20064573 1234..920 1530 99 Minus
Blast to na_te.dros performed on 2019-03-15 14:51:49 has no hits.

FI04117.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:52:33 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20062619..20062930 921..1232 99 <- Minus
chr2L 20062983..20063359 544..920 99 <- Minus
chr2L 20063417..20063959 1..543 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:47:22 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 1..1104 4..1107 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:00:43 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 1..1104 4..1107 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:46:57 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 1..1104 4..1107 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:12:45 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 1..1104 4..1107 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:49 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 75..1306 1..1232 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:00:43 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 75..1306 1..1232 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:46:57 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 79..1310 1..1232 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-12 11:09:15 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 75..1306 1..1232 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:12:45 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
vls-RA 79..1310 1..1232 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:52:33 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20064261..20064572 921..1232 99 <- Minus
2L 20064625..20065001 544..920 99 <- Minus
2L 20065059..20065601 1..543 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:52:33 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20064261..20064572 921..1232 99 <- Minus
2L 20064625..20065001 544..920 99 <- Minus
2L 20065059..20065601 1..543 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:52:33 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20064261..20064572 921..1232 99 <- Minus
2L 20064625..20065001 544..920 99 <- Minus
2L 20065059..20065601 1..543 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:46:57 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20064261..20064572 921..1232 99 <- Minus
arm_2L 20064625..20065001 544..920 99 <- Minus
arm_2L 20065059..20065601 1..543 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:27:50 Download gff for FI04117.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20064261..20064572 921..1232 99 <- Minus
2L 20064625..20065001 544..920 99 <- Minus
2L 20065059..20065601 1..543 99   Minus

FI04117.pep Sequence

Translation from 0 to 1106

> FI04117.pep
TMFPQRSSELYRTPVTHQPPPALELAGNLEYPNLNIADLNARLENLSPRL
HDCWDSIAINDHNHLALATNRREGRQWWGMLFGYGRDQMHHMSVDSANFK
LQAEHTVNIVRYAEDDFLLVALGDTRLQAWSTYSKVRDSQSPYCLFLVGE
SSAHPTPISQLSVFKADPRTAVSGSADSTLNVWDLSGADMVSTYRSRSSH
TDKLTGLATPAASVDKFVTCDRGGCARLWDVRAAAPSSTCLYADASHVLS
FTSAAWAAASELQGDNHIYLGDYDGKVHTLDIRVPRKLAETREYFDKGHV
AQLLINGPHLAAMSNLPASVKVANVQAGHEFIYTHQDTHSRLTDAVWTDD
STLITIGHGRKMVTHAIK*

FI04117.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15459-PA 367 GF15459-PA 1..367 2..368 1614 79 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21593-PA 367 GG21593-PA 1..367 2..368 1826 90.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13242-PA 365 GH13242-PA 1..365 2..367 1386 67.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
vls-PA 367 CG10728-PA 1..367 2..368 1944 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12539-PA 364 GI12539-PA 1..364 2..367 1438 69.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26675-PA 367 GL26675-PA 1..366 2..367 1416 67.2 Plus
Dper\GL27021-PA 289 GL27021-PA 1..279 92..368 874 58.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10527-PA 367 GA10527-PA 1..366 2..367 1403 66.1 Plus
Dpse\GA22348-PA 379 GA22348-PA 1..369 2..368 1169 58.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16967-PA 367 GM16967-PA 1..367 2..368 1895 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21719-PA 809 GD21719-PA 1..181 2..182 955 95 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17892-PA 370 GJ17892-PA 1..365 2..368 1436 69.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18685-PA 367 GK18685-PA 1..367 2..367 1463 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12612-PA 367 GE12612-PA 1..367 2..368 1836 90.5 Plus

FI04117.hyp Sequence

Translation from 0 to 1106

> FI04117.hyp
TMFPQRSSELYRTPVTHQPPPALELAGNLEYPNLNIADLNARLENLSPRL
HDCWDSIAINDHNHLALATNRREGRQWWGMLFGYGRDQMHHMSVDSANFK
LQAEHTVNIVRYAEDDFLLVALGDTRLQAWSTYSKVRDSQSPYCLFLVGE
SSAHPTPISQLSVFKADPRTAVSGSADSTLNVWDLSGADMVSTYRSRSSH
TDKLTGLATPAASVDKFVTCDRGGCARLWDVRAAAPSSTCLYADASHVLS
FTSAAWAAASELQGDNHIYLGDYDGKVHTLDIRVPRKLAETREYFDKGHV
AQLLINGPHLAAMSNLPASVKVANVQAGHEFIYTHQDTHSRLTDAVWTDD
STLITIGHGRKMVTHAIK*

FI04117.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
vls-PA 367 CG10728-PA 1..367 2..368 1944 100 Plus